##SnpEffVersion="4.1a (build 2015-01-07), by Pablo Cingolani"
##SnpEffCmd="SnpEff  testHg3775Chr1 examples/test.1KG.vcf "
##INFO=<ID=ANN,Number=.,Type=String,Description="Functional annotations: 'Allele | Annotation | Annotation_Impact | Gene_Name | Gene_ID | Feature_Type | Feature_ID | Transcript_BioType | Rank | HGVS.c | HGVS.p | cDNA.pos / cDNA.length | CDS.pos / CDS.length | AA.pos / AA.length | Distance | ERRORS / WARNINGS / INFO' ">
##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' ">
##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' ">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	
1	10291	.	C	T	2373.79	.	AC=149;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>T|||||1578|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>T|||||1581|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>T|||||1583|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>T|||||1719|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||4072|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||4072|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||4072|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||4113|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||4120|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10303	.	C	T	294.2	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>T|||||1566|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>T|||||1569|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>T|||||1571|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>T|||||1707|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||4060|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||4060|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||4060|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||4101|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||4108|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10309	.	C	T	164.52	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>T|||||1560|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>T|||||1563|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>T|||||1565|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>T|||||1701|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||4054|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||4054|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||4054|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||4095|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||4102|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10315	.	C	T	394.78	.	AC=47;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>T|||||1554|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>T|||||1557|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>T|||||1559|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>T|||||1695|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||4048|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||4048|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||4048|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||4089|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||4096|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10457	.	A	C	217.73	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1A>C|||||1412|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1A>C|||||1415|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1A>C|||||1417|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1A>C|||||1553|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>G|||||3906|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>G|||||3906|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>G|||||3906|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>G|||||3947|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>G|||||3954|,C|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10469	rs117577454	C	G	365.78	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>G|||||1400|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>G|||||1403|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>G|||||1405|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>G|||||1541|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||3894|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||3894|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||3894|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||3935|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||3942|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10492	rs55998931	C	T	1309.47	.	AC=72;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>T|||||1377|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>T|||||1380|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>T|||||1382|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>T|||||1518|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||3871|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||3871|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||3871|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||3912|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||3919|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10575	.	C	G	7.23	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>G|||||1294|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>G|||||1297|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>G|||||1299|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>G|||||1435|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||3788|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||3788|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||3788|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||3829|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||3836|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10583	rs58108140	G	A	2817.71	.	AC=154;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1G>A|||||1286|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1G>A|||||1289|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1G>A|||||1291|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1G>A|||||1427|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||3780|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||3780|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||3780|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||3821|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||3828|,A|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10611	.	C	G	200.55	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>G|||||1258|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>G|||||1261|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>G|||||1263|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>G|||||1399|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||3752|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||3752|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||3752|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||3793|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||3800|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10618	.	G	A	7.86	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1G>A|||||1251|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1G>A|||||1254|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1G>A|||||1256|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1G>A|||||1392|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||3745|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||3745|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||3745|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||3786|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||3793|,A|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10622	.	T	G	407.2	.	AC=32;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1T>G|||||1247|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1T>G|||||1250|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1T>G|||||1252|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1T>G|||||1388|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>C|||||3741|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>C|||||3741|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>C|||||3741|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>C|||||3782|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>C|||||3789|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	10623	.	T	C	227.69	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1T>C|||||1246|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1T>C|||||1249|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1T>C|||||1251|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1T>C|||||1387|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>G|||||3740|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>G|||||3740|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>G|||||3740|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>G|||||3781|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>G|||||3788|,C|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11154	.	A	C	103.5	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1A>C|||||715|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1A>C|||||718|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1A>C|||||720|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1A>C|||||856|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>G|||||3209|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>G|||||3209|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>G|||||3209|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>G|||||3250|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>G|||||3257|,C|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11167	.	C	A	327.19	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>A|||||702|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>A|||||705|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>A|||||707|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>A|||||843|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>T|||||3196|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>T|||||3196|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>T|||||3196|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>T|||||3237|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>T|||||3244|,A|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11187	.	G	A	9.91	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1G>A|||||682|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1G>A|||||685|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1G>A|||||687|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1G>A|||||823|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||3176|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||3176|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||3176|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||3217|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||3224|,A|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11391	.	T	A	181.94	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1T>A|||||478|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1T>A|||||481|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1T>A|||||483|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1T>A|||||619|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>T|||||2972|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>T|||||2972|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>T|||||2972|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>T|||||3013|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>T|||||3020|,A|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11409	.	A	G	284.71	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1A>G|||||460|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1A>G|||||463|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1A>G|||||465|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1A>G|||||601|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||2954|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||2954|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||2954|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||2995|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||3002|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11457	.	C	G	437.0	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>G|||||412|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>G|||||415|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>G|||||417|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>G|||||553|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||2906|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||2906|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||2906|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||2947|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||2954|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11508	.	A	G	1734.25	.	AC=52;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1A>G|||||361|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1A>G|||||364|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1A>G|||||366|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1A>G|||||502|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||2855|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||2855|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||2855|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||2896|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||2903|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11542	.	A	T	403.31	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1A>T|||||327|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1A>T|||||330|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1A>T|||||332|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1A>T|||||468|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>A|||||2821|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>A|||||2821|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>A|||||2821|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>A|||||2862|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>A|||||2869|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11565	.	G	T	908.92	.	AC=42;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1G>T|||||304|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1G>T|||||307|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1G>T|||||309|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1G>T|||||445|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>A|||||2798|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>A|||||2798|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>A|||||2798|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>A|||||2839|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>A|||||2846|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11606	.	A	G	23.32	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1A>G|||||263|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1A>G|||||268|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1A>G|||||404|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||2757|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||2757|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||2757|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||2798|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||2805|,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11677	.	G	C	85.26	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1G>C|||||192|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1G>C|||||195|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1G>C|||||197|,C|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1G>C|||||333|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||2686|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||2686|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||2686|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||2727|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||2734|,C|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11710	.	G	T	197.69	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1G>T|||||159|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1G>T|||||162|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1G>T|||||164|,T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1G>T|||||300|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>A|||||2653|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>A|||||2653|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>A|||||2653|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>A|||||2694|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>A|||||2701|,T|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11863	.	C	A	475.04	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>A|||||6|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>A|||||9|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>A|||||11|,A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>A|||||147|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>T|||||2500|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>T|||||2500|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>T|||||2500|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>T|||||2541|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>T|||||2548|,A|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
1	11907	.	C	T	146.63	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>T|||||103|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||2456|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||2456|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||2456|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||2497|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||2504|,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.39C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.36C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.34C>T||||||
1	11922	.	T	A	137.29	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1T>A|||||88|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>T|||||2441|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>T|||||2441|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>T|||||2441|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>T|||||2482|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>T|||||2489|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.54T>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.51T>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.49T>A||||||
1	11961	.	G	A	21.63	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1G>A|||||49|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||2402|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||2402|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||2402|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||2443|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||2450|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.93G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.90G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.88G>A||||||
1	12074	.	T	C	27.02	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>G|||||2289|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>G|||||2289|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>G|||||2289|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>G|||||2330|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>G|||||2337|,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|1/5|n.48+17T>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.206T>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.203T>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.201T>C||||||
1	12078	.	G	A	25.69	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||2285|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||2285|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||2285|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||2326|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||2333|,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|1/5|n.48+21G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.210G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.207G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.205G>A||||||
1	12102	.	G	A	14.51	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||2261|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||2261|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||2261|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||2302|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||2309|,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|1/5|n.48+45G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.234G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.231G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.229G>A||||||
1	12138	.	C	A	18.49	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>T|||||2225|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>T|||||2225|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>T|||||2225|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>T|||||2266|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>T|||||2273|,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|1/5|n.49-41C>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.270C>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.267C>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.265C>A||||||
1	12167	.	A	G	4.92	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||2196|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||2196|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||2196|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||2237|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||2244|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|1/5|n.49-12A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.299A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.296A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.294A>G||||||
1	12198	.	G	C	1169.08	.	AC=42;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||2165|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||2165|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||2165|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||2206|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||2213|,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.330G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.327G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.325G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|2/6|n.68G>C||||||
1	12201	.	C	G	35.14	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||2162|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||2162|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||2162|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||2203|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||2210|,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.333C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.330C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.328C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|2/6|n.71C>G||||||
1	12214	.	C	G	72.02	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||2149|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||2149|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||2149|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||2190|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||2197|,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/3|n.346C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/3|n.343C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/4|n.341C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|2/6|n.84C>G||||||
1	12228	.	G	C	18.84	.	AC=4;ANN=C|splice_donor_variant&intron_variant|HIGH|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/2|n.359+1G>C||||||,C|splice_donor_variant&intron_variant|HIGH|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/2|n.356+1G>C||||||,C|splice_donor_variant&intron_variant|HIGH|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/3|n.354+1G>C||||||,C|splice_donor_variant&intron_variant|HIGH|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|2/5|n.97+1G>C||||||,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||2135|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||2135|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||2135|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||2176|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||2183|
1	12292	.	G	C	22.13	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||2071|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||2071|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||2071|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||2112|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||2119|,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/2|n.359+65G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/2|n.356+65G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/3|n.354+65G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|2/5|n.97+65G>C||||||
1	12379	.	G	C	49.84	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||1984|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||1984|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||1984|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||2025|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||2032|,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/2|n.359+152G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/2|n.356+152G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/3|n.354+152G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|2/5|n.97+152G>C||||||
1	12533	.	C	G	29.84	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||1830|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||1830|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||1830|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||1871|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||1878|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|1/2|n.360-80C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|1/2|n.357-80C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|1/3|n.355-62C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|2/5|n.98-80C>G||||||
1	12643	.	C	T	172.03	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||1720|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||1720|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||1720|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||1761|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||1768|,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/3|n.390C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/3|n.387C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/4|n.403C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|3/6|n.128C>T||||||
1	12693	.	C	G	262.3	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||1670|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||1670|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||1670|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||1711|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||1718|,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/3|n.440C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/3|n.437C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/4|n.453C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|3/6|n.178C>G||||||
1	12783	.	G	A	1752.56	.	AC=106;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||1580|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||1580|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||1580|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||1621|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||1628|,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.468+62G>A||||||,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.465+62G>A||||||,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.481+62G>A||||||,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|3/5|n.182+86G>A||||||
1	12807	.	C	T	136.07	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||1556|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||1556|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||1556|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||1597|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||1604|,T|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.468+86C>T||||||,T|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.465+86C>T||||||,T|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.481+86C>T||||||,T|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|3/5|n.182+110C>T||||||
1	12839	.	G	C	49.82	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||1524|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||1524|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||1524|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||1565|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||1572|,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.468+118G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.465+118G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.481+118G>C||||||,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|3/5|n.183-136G>C||||||
1	12855	.	C	G	127.11	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||1508|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||1508|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||1508|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||1549|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||1556|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.468+134C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.465+134C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.481+134C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|3/5|n.183-120C>G||||||
1	12939	.	C	G	27.48	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||1424|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||1424|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||1424|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||1465|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||1472|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.468+218C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.465+218C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.481+218C>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|3/5|n.183-36C>G||||||
1	13072	.	G	A	41.06	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||1291|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||1291|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||1291|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||1332|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||1339|,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.469-149G>A||||||,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.466-153G>A||||||,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-331G>A||||||,A|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|4/5|n.260+20G>A||||||
1	13116	.	T	G	605.0	.	AC=48;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>C|||||1247|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>C|||||1247|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>C|||||1247|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>C|||||1288|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>C|||||1295|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.469-105T>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.466-109T>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-287T>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|4/5|n.260+64T>G||||||
1	13118	.	A	G	666.79	.	AC=52;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||1245|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||1245|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||1245|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||1286|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||1293|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|2/2|n.469-103A>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|2/2|n.466-107A>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-285A>G||||||,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|4/5|n.260+66A>G||||||
1	13273	.	G	C	1971.47	.	AC=92;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||1090|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||1090|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||1090|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||1131|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||1138|,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-130G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.521G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.514G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|5/6|n.313G>C||||||
1	13302	.	C	T	2578.28	.	AC=90;ANN=T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||1061|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||1061|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||1061|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||1102|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||1109|,T|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-101C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.550C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.543C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|5/6|n.342C>T||||||
1	13327	.	G	C	247.72	.	AC=22;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>G|||||1036|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>G|||||1036|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>G|||||1036|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>G|||||1077|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>G|||||1084|,C|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-76G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.575G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.568G>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|5/6|n.367G>C||||||
1	13380	.	C	G	72.29	.	AC=12;ANN=G|splice_region_variant&intron_variant|LOW|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|5/5|n.414+6C>G||||||,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||983|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||983|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||983|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||1024|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||1031|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-23C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.628C>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.621C>G||||||
1	13400	.	T	G	301.77	.	AC=29;ANN=G|splice_region_variant&intron_variant|LOW|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|2/3|n.482-3T>G||||||,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>C|||||963|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>C|||||963|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>C|||||963|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>C|||||1004|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>C|||||1011|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|5/5|n.414+26T>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.648T>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.641T>G||||||
1	13424	.	A	G	437.25	.	AC=33;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||939|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||939|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||939|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||980|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||987|,G|intron_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|5/5|n.415-29A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.672A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.665A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|3/4|n.503A>G||||||
1	13595	.	A	G	146.38	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||768|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||768|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||768|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||809|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||816|,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.843A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.836A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|3/4|n.674A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|6/6|n.557A>G||||||
1	13613	.	T	A	30.07	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>T|||||750|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>T|||||750|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>T|||||750|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>T|||||791|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>T|||||798|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.861T>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.854T>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|3/4|n.692T>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|6/6|n.575T>A||||||
1	13667	.	C	T	89.66	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||696|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||696|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||696|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||737|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||744|,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.915C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.908C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.741C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene|6/6|n.629C>T||||||
1	13729	.	T	C	43.39	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>G|||||634|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||59|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>G|||||634|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>G|||||634|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>G|||||675|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>G|||||682|,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.977T>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.970T>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.803T>C||||||
1	13776	.	G	A	30.54	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||587|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||106|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||587|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||587|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||628|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||635|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1024G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1017G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.850G>A||||||
1	13799	.	T	G	115.61	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>C|||||564|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>G|||||129|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>C|||||564|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>C|||||564|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>C|||||605|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>C|||||612|,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1047T>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1040T>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.873T>G||||||
1	13829	.	G	A	426.58	.	AC=22;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||534|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||159|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||534|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||534|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||575|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||582|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1077G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1070G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.903G>A||||||
1	13838	.	C	T	81.96	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>A|||||525|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||168|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>A|||||525|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>A|||||525|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>A|||||566|,T|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>A|||||573|,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1086C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1079C>T||||||,T|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.912C>T||||||
1	13868	.	A	G	1060.05	.	AC=78;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783T>C|||||495|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||198|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416T>C|||||495|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669T>C|||||495|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351T>C|||||536|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583T>C|||||543|,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1116A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1109A>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.942A>G||||||
1	13896	.	C	A	1035.96	.	AC=86;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>T|||||467|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||226|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>T|||||467|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>T|||||467|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>T|||||508|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>T|||||515|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1144C>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1137C>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.970C>A||||||
1	13980	.	T	C	161.02	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>G|||||383|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||310|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>G|||||383|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>G|||||383|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>G|||||424|,C|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>G|||||431|,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1228T>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1221T>C||||||,C|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.1054T>C||||||
1	14245	.	G	A	93.66	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783C>T|||||118|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||575|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416C>T|||||118|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669C>T|||||118|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351C>T|||||159|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583C>T|||||166|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1493G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1486G>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.1319G>A||||||
1	14248	.	T	G	43.63	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783A>C|||||115|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>G|||||578|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416A>C|||||115|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669A>C|||||115|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351A>C|||||156|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583A>C|||||163|,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1496T>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1489T>G||||||,G|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.1322T>G||||||
1	14354	.	C	A	544.6	.	AC=51;ANN=A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>T|||||9|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||684|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>T|||||9|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>T|||||9|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>T|||||50|,A|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>T|||||57|,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript|3/3|n.1602C>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene|3/3|n.1595C>A||||||,A|non_coding_exon_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene|4/4|n.1428C>A||||||
1	14436	.	G	A	36.86	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||27|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||24|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||27|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||766|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1710C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1343C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1596C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|11/11|n.1319C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|13/13|n.1558C>T||||||
1	14464	.	A	T	727.27	.	AC=45;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>T|||||55|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>T|||||52|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>T|||||55|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>T|||||794|,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1682T>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1315T>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1568T>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|11/11|n.1291T>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|13/13|n.1530T>A||||||
1	14487	.	G	A	15.49	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||78|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||75|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||78|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||817|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1659C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1292C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1545C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|11/11|n.1268C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|13/13|n.1507C>T||||||
1	14513	.	G	A	410.87	.	AC=34;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||104|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||101|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||104|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||843|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1254-12C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1492-11C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1633C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1266C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1519C>T||||||
1	14574	.	A	G	12.33	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||165|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||162|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||165|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||904|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1254-73T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1492-72T>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1572T>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1205T>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1458T>C||||||
1	14653	.	C	T	156.9	.	AC=22;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||244|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||241|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||244|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||983|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1254-152G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1492-151G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1493G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1126G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1379G>A||||||
1	14654	.	G	A	73.14	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||245|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||242|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||245|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||984|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1254-153C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1492-152C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1492C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1125C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1378C>T||||||
1	14673	.	G	C	596.43	.	AC=48;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>C|||||264|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>C|||||261|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>C|||||264|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>C|||||1003|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1254-172C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1492-171C>G||||||,C|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1473C>G||||||,C|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1106C>G||||||,C|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1359C>G||||||
1	14699	.	C	G	717.86	.	AC=52;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>G|||||290|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>G|||||287|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>G|||||290|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>G|||||1029|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1254-198G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1492-197G>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|12/12|n.1447G>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|9/9|n.1080G>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|10/10|n.1333G>C||||||
1	14857	.	G	A	129.47	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||448|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||445|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||448|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1187|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1317-28C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.950-28C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1203-28C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+148C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+143C>T||||||
1	14874	.	G	A	326.17	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||465|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||462|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||465|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1204|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1317-45C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.950-45C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1203-45C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+131C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+126C>T||||||
1	14889	.	G	A	45.52	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||480|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||477|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||480|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1219|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1317-60C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.950-60C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1203-60C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+116C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+111C>T||||||
1	14896	.	T	C	21.08	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||487|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||484|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||487|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||1226|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1317-67A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.950-67A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1203-67A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+109A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+104A>G||||||
1	14907	.	A	G	35737.45	.	AC=482;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||498|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||495|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||498|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||1237|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1316+63T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.949+63T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1202+63T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+98T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+93T>C||||||
1	14930	.	A	G	57798.38	.	AC=528;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||521|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||518|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||521|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||1260|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1316+40T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.949+40T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1202+40T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+75T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+70T>C||||||
1	14933	.	G	A	10235.12	.	AC=132;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||524|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||521|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||524|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1263|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1316+37C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.949+37C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1202+37C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+72C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+67C>T||||||
1	14937	.	T	C	51.74	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||528|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||525|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||528|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||1267|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1316+33A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.949+33A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1202+33A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+68A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+63A>G||||||
1	14939	.	G	A	13.98	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||530|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||527|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||530|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1269|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1316+31C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.949+31C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1202+31C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+66C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+61C>T||||||
1	14948	.	G	A	650.96	.	AC=35;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||539|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||536|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||539|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1278|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/11|n.1316+22C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/8|n.949+22C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/9|n.1202+22C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+57C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+52C>T||||||
1	14976	.	G	A	1837.8	.	AC=91;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||567|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||564|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||567|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1306|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/10|n.1253+29C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/12|n.1491+24C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/12|n.1310C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/9|n.943C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/10|n.1196C>T||||||
1	15029	.	G	A	10.34	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||620|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||617|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||620|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1359|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|11/12|n.1257C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|8/9|n.890C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|9/10|n.1143C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|10/11|n.1229C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|12/13|n.1462C>T||||||
1	15053	.	C	T	584.01	.	AC=30;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||644|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||641|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||644|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||1383|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-15G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-15G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-15G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-15G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-15G>A||||||
1	15094	.	A	G	65.17	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||685|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||682|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||685|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||1424|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-56T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-56T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-56T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-56T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-56T>C||||||
1	15118	.	A	G	1886.2	.	AC=116;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||709|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||706|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||709|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||1448|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-80T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-80T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-80T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-80T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-80T>C||||||
1	15150	.	C	T	24.75	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||741|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||738|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||741|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||1480|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-112G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-112G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-112G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-112G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-112G>A||||||
1	15189	.	C	T	814.76	.	AC=36;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||780|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||777|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||780|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||1519|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-151G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-151G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-151G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-151G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-151G>A||||||
1	15190	.	G	A	690.08	.	AC=60;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||781|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||778|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||781|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1520|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-152C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-152C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-152C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-152C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-152C>T||||||
1	15204	.	C	A	979.29	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>A|||||795|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>A|||||792|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>A|||||795|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||1534|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-166G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-166G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-166G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-166G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-166G>T||||||
1	15208	.	G	A	201.51	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||799|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||796|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||799|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1538|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-170C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-170C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-170C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-170C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-170C>T||||||
1	15211	.	T	G	13382.86	.	AC=390;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>G|||||802|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>G|||||799|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>G|||||802|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>G|||||1541|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-173A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-173A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-173A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-173A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-173A>C||||||
1	15228	.	C	T	54.1	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||819|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||816|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||819|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||1558|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-190G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-190G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-190G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-190G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-190G>A||||||
1	15239	.	C	T	48.7	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||830|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||827|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||830|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||1569|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-201G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-201G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-201G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-201G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-201G>A||||||
1	15244	.	C	A	69.64	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>A|||||835|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>A|||||832|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>A|||||835|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||1574|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-206G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-206G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-206G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-206G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-206G>T||||||
1	15274	.	A	T	5855.48	.	AC=250;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>T|||||865|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>T|||||862|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>T|||||865|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>T|||||1604|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-236T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-236T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-236T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-236T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-236T>A||||||
1	15297	.	G	C	21.56	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>C|||||888|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>C|||||885|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>C|||||888|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>C|||||1627|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-259C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-259C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-259C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-259C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-259C>G||||||
1	15389	.	C	T	24.65	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||980|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||977|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||980|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||1719|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-351G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-351G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-351G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-351G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-351G>A||||||
1	15399	.	G	A	181.11	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||990|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||987|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||990|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1729|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1248-361C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-361C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1134-361C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1220-361C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1453-361C>T||||||
1	15425	.	G	A	414.92	.	AC=26;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||1016|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||1013|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||1016|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1755|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1247+371C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-387C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1133+371C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1219+371C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1452+371C>T||||||
1	15616	.	G	A	387.56	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||1207|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||1204|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||1207|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1946|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1247+180C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-578C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1133+180C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1219+180C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1452+180C>T||||||
1	15627	.	T	C	13.09	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||1218|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||1215|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||1218|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||1957|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1247+169A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-589A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1133+169A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1219+169A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1452+169A>G||||||
1	15644	.	G	A	61.54	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||1235|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||1232|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||1235|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||1974|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1247+152C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-606C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1133+152C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1219+152C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1452+152C>T||||||
1	15774	.	G	A	73.95	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||1365|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||1362|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||1365|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||2104|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/11|n.1247+22C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-736C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/9|n.1133+22C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/10|n.1219+22C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/12|n.1452+22C>T||||||
1	15817	.	G	T	143.76	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>T|||||1408|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>T|||||1405|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>T|||||1408|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>T|||||2147|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-779C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/12|n.1226C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/10|n.1112C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/11|n.1198C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/13|n.1431C>A||||||
1	15820	.	G	T	2675.38	.	AC=122;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>T|||||1411|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>T|||||1408|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>T|||||1411|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>T|||||2150|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-782C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/12|n.1223C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/10|n.1109C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/11|n.1195C>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/13|n.1428C>A||||||
1	15865	.	C	T	81.56	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||1456|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||1453|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||1456|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||2195|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-827G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|10/12|n.1178G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/10|n.1064G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/11|n.1150G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|11/13|n.1383G>A||||||
1	15922	.	A	G	45.82	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||1513|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||1510|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||1513|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||2252|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.881-884T>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|9/12|n.1123T>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|8/10|n.1007T>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|9/11|n.1093T>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|10/13|n.1328T>C||||||
1	15956	.	G	A	129.83	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||1547|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||1544|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||1547|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||2286|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-9C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+898C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-9C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-9C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-9C>T||||||
1	16014	.	C	T	686.27	.	AC=49;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||1605|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||1602|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||1605|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||2344|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-67G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+840G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-67G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-67G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-67G>A||||||
1	16068	.	T	C	1500.89	.	AC=96;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||1659|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||1656|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||1659|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||2398|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-121A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+786A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-121A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-121A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-121A>G||||||
1	16071	.	G	A	106.74	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||1662|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||1659|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||1662|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||2401|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-124C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+783C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-124C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-124C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-124C>T||||||
1	16097	.	T	G	42.42	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>G|||||1688|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>G|||||1685|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>G|||||1688|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>G|||||2427|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-150A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+757A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-150A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-150A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-150A>C||||||
1	16103	.	T	G	15817.87	.	AC=307;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>G|||||1694|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>G|||||1691|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>G|||||1694|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>G|||||2433|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-156A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+751A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-156A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-156A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-156A>C||||||
1	16125	.	T	G	22.43	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>G|||||1716|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>G|||||1713|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>G|||||1716|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>G|||||2455|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-178A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+729A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-178A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-178A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-178A>C||||||
1	16142	.	G	A	101.32	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||1733|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||1730|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||1733|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||2472|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-195C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+712C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-195C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-195C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-195C>T||||||
1	16206	.	T	A	676.19	.	AC=52;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>A|||||1797|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>A|||||1794|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>A|||||1797|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>A|||||2536|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-259A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+648A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-259A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-259A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-259A>T||||||
1	16257	.	G	C	2646.79	.	AC=154;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>C|||||1848|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>C|||||1845|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>C|||||1848|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>C|||||2587|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1098-310C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+597C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.982-310C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1068-310C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1303-310C>G||||||
1	16280	.	T	C	909.79	.	AC=23;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||1871|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||1868|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||1871|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||2610|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+327A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+574A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+327A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+327A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+327A>G||||||
1	16298	.	C	T	350.13	.	AC=34;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||1889|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||1886|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||1889|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||2628|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+309G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+556G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+309G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+309G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+309G>A||||||
1	16378	.	T	C	23993.58	.	AC=320;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||1969|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||1966|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||1969|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||2708|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+229A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+476A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+229A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+229A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+229A>G||||||
1	16451	.	A	G	52.46	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||2042|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||2039|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||2042|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||2781|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+156T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+403T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+156T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+156T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+156T>C||||||
1	16487	.	T	C	1113.72	.	AC=54;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||2078|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||2075|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||2078|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||2817|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+120A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+367A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+120A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+120A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+120A>G||||||
1	16495	.	G	C	19110.24	.	AC=296;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>C|||||2086|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>C|||||2083|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>C|||||2086|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>C|||||2825|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+112C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+359C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+112C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+112C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+112C>G||||||
1	16534	.	C	T	10789.74	.	AC=236;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||2125|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||2122|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||2125|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||2864|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+73G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+320G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+73G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+73G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+73G>A||||||
1	16571	.	G	A	557.49	.	AC=52;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||2162|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||2159|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||2162|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||2901|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/11|n.1097+36C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+283C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/9|n.981+36C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/10|n.1067+36C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/12|n.1302+36C>T||||||
1	16688	.	G	A	36.43	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||2279|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||2276|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||2279|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||3018|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+166C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/12|n.1016C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/10|n.900C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/11|n.986C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/13|n.1221C>T||||||
1	16719	.	T	A	50.03	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>A|||||2310|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>A|||||2307|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>A|||||2310|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>A|||||3049|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+135A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|8/12|n.985A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|7/10|n.869A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|8/11|n.955A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|9/13|n.1190A>T||||||
1	16809	.	C	G	40.93	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>G|||||2400|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>G|||||2397|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>G|||||2400|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>G|||||3139|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|7/11|n.939-44G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+45G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|6/9|n.823-44G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|7/10|n.909-44G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|7/12|n.1146-44G>C||||||
1	16841	.	G	T	289.05	.	AC=32;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>T|||||2432|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>T|||||2429|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>T|||||2432|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>T|||||3171|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|7/11|n.938+13C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/8|n.880+13C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|6/9|n.822+17C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|7/10|n.908+17C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|7/12|n.1145+17C>A||||||
1	16856	.	A	G	18.05	.	AC=10;ANN=G|splice_donor_variant&intron_variant|HIGH|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|6/9|n.822+2T>C||||||,G|splice_donor_variant&intron_variant|HIGH|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|7/10|n.908+2T>C||||||,G|splice_donor_variant&intron_variant|HIGH|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|7/12|n.1145+2T>C||||||,G|splice_region_variant&non_coding_exon_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|7/12|n.936T>C||||||,G|splice_region_variant&non_coding_exon_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/9|n.878T>C||||||,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||2447|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||2444|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||2447|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||3186|
1	17020	.	G	A	488.08	.	AC=35;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||2611|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||2608|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||2611|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||3350|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|7/12|n.772C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|7/9|n.714C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|6/10|n.660C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|7/11|n.746C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|7/13|n.983C>T||||||
1	17194	.	C	T	114.09	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||2785|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||2782|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||2785|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||3524|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|6/11|n.736+39G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|6/8|n.678+39G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|5/9|n.624+39G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|6/10|n.710+39G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|6/12|n.947+39G>A||||||
1	17365	.	C	G	1018.83	.	AC=65;ANN=G|splice_acceptor_variant&intron_variant|HIGH|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/11|n.605-1G>C||||||,G|splice_acceptor_variant&intron_variant|HIGH|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|5/8|n.547-1G>C||||||,G|splice_acceptor_variant&intron_variant|HIGH|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/12|n.816-1G>C||||||,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>G|||||2956|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>G|||||2953|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>G|||||2956|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>G|||||3695|,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|5/10|n.492G>C||||||,G|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|6/11|n.578G>C||||||
1	17385	.	G	A	1647.86	.	AC=86;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||2976|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||2973|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||2976|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||3715|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/11|n.605-21C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|5/8|n.547-21C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/9|n.489-17C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/10|n.575-17C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/12|n.816-21C>T||||||
1	17452	.	C	T	771.95	.	AC=46;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||3043|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||3040|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||3043|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||3782|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/11|n.605-88G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|5/8|n.546+46G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/9|n.489-84G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/10|n.575-84G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/12|n.816-88G>A||||||
1	17484	.	G	A	30.56	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||3075|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||3072|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||3075|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||3814|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/11|n.604+118C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|5/8|n.546+14C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/9|n.489-116C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/10|n.575-116C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/12|n.815+118C>T||||||
1	17538	.	C	A	6508.25	.	AC=151;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>A|||||3129|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>A|||||3126|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>A|||||3129|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||3868|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/11|n.604+64G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/8|n.540-34G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/9|n.488+68G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/10|n.574+68G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/12|n.815+64G>T||||||
1	17563	.	G	A	41.76	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||3154|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||3151|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||3154|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||3893|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/11|n.604+39C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/8|n.539+43C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/9|n.488+43C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/10|n.574+43C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/12|n.815+39C>T||||||
1	17594	.	C	T	627.01	.	AC=37;ANN=T|splice_region_variant&intron_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/11|n.604+8G>A||||||,T|splice_region_variant&intron_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/12|n.815+8G>A||||||,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||3185|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||3182|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||3185|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||3924|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/8|n.539+12G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/9|n.488+12G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/10|n.574+12G>A||||||
1	17613	.	C	A	27.07	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>A|||||3204|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>A|||||3201|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>A|||||3204|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||3943|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/12|n.593G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/9|n.532G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/10|n.481G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/11|n.567G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/13|n.804G>T||||||
1	17614	.	G	A	421.94	.	AC=31;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||3205|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||3202|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||3205|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||3944|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/12|n.592C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/9|n.531C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/10|n.480C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/11|n.566C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/13|n.803C>T||||||
1	17626	.	G	A	181.58	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||3217|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||3214|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||3217|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||3956|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/12|n.580C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/9|n.519C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/10|n.468C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/11|n.554C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/13|n.791C>T||||||
1	17695	.	G	A	196.81	.	AC=16;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||3286|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||3283|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||3286|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||4025|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/12|n.511C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/9|n.450C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/10|n.399C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/11|n.485C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/13|n.722C>T||||||
1	17716	.	G	A	82.79	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||3307|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||3304|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||3307|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||4046|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/12|n.490C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/9|n.429C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/10|n.378C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/11|n.464C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/13|n.701C>T||||||
1	17730	.	C	A	104.78	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>A|||||3321|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>A|||||3318|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>A|||||3321|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||4060|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|5/12|n.476G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|4/9|n.415G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|4/10|n.364G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|5/11|n.450G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|5/13|n.687G>T||||||
1	17746	.	A	G	877.75	.	AC=60;ANN=G|splice_region_variant&intron_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|4/11|n.464-4T>C||||||,G|splice_region_variant&intron_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|3/8|n.403-4T>C||||||,G|splice_region_variant&intron_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|3/9|n.352-4T>C||||||,G|splice_region_variant&intron_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|4/10|n.438-4T>C||||||,G|splice_region_variant&intron_variant|LOW|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|4/12|n.675-4T>C||||||,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||3337|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||3334|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||3337|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||4076|
1	17805	.	T	C	130.35	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||3396|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||3393|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||3396|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||4135|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|4/11|n.464-63A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|3/8|n.403-63A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|3/9|n.352-63A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|4/10|n.438-63A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|4/12|n.675-63A>G||||||
1	17928	.	T	A	75.69	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>A|||||3519|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>A|||||3516|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>A|||||3519|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>A|||||4258|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|4/12|n.450A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|3/9|n.389A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|3/10|n.338A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|4/11|n.424A>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|4/13|n.661A>T||||||
1	17929	.	C	A	75.94	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>A|||||3520|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>A|||||3517|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>A|||||3520|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>A|||||4259|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|4/12|n.449G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|3/9|n.388G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|3/10|n.337G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|4/11|n.423G>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|4/13|n.660G>T||||||
1	17968	.	G	A	116.04	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||3559|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||3556|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||3559|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||4298|,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|4/12|n.410C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|3/9|n.349C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|3/10|n.298C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|4/11|n.384C>T||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|4/13|n.621C>T||||||
1	18030	.	C	T	111.69	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||3621|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||3618|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||3621|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||4360|,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|4/12|n.348G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|3/9|n.287G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|3/10|n.236G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|4/11|n.322G>A||||||,T|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|4/13|n.559G>A||||||
1	18094	.	C	T	133.26	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||3685|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||3682|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||3685|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632C>T|||||4424|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|3/11|n.317-33G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|2/8|n.256-33G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-33G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|3/10|n.291-33G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|3/12|n.528-33G>A||||||
1	18143	.	A	G	34.78	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||3734|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||3731|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||3734|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||4473|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|3/11|n.317-82T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|2/8|n.256-82T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-82T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|3/10|n.291-82T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|3/12|n.528-82T>C||||||
1	18164	.	T	C	60.92	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||3755|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||3752|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||3755|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||4494|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|3/11|n.317-103A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|2/8|n.256-103A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-103A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|3/10|n.291-103A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|3/12|n.528-103A>G||||||
1	18200	.	A	G	79.64	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||3791|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||3788|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||3791|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||4530|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|3/11|n.316+68T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|2/8|n.255+68T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-139T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|3/10|n.290+68T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|3/12|n.527+68T>C||||||
1	18422	.	T	C	51.74	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>C|||||4013|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>C|||||4010|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>C|||||4013|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632T>C|||||4752|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-43A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-53A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-361A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-56A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-56A>G||||||
1	18499	.	A	G	88.1	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||4090|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||4087|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||4090|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>G|||||4829|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-120T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-130T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-438T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-133T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-133T>C||||||
1	18565	.	G	A	11.01	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||4156|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||4153|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||4156|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632G>A|||||4895|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-186C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-196C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-504C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-199C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-199C>T||||||
1	18631	.	A	C	237.77	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>C|||||4222|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>C|||||4219|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>C|||||4222|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.*632A>C|||||4961|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-252T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-262T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-570T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-265T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-265T>G||||||
1	18711	.	C	T	76.45	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||4302|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||4299|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||4302|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-332G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-342G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-650G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-345G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-345G>A||||||
1	18718	.	A	G	25.79	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||4309|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||4306|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||4309|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-339T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-349T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-657T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-352T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-352T>C||||||
1	18746	.	T	A	705.92	.	AC=31;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>A|||||4337|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>A|||||4334|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>A|||||4337|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-367A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-377A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-685A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-380A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-380A>T||||||
1	18768	.	C	T	125.47	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||4359|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||4356|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||4359|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-389G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-399G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-707G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-402G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-402G>A||||||
1	18849	.	C	G	544.05	.	AC=47;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>G|||||4440|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>G|||||4437|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>G|||||4440|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-470G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-480G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-788G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-483G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-483G>C||||||
1	18873	.	C	T	371.87	.	AC=28;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||4464|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||4461|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||4464|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-494G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-504G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-812G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-507G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-507G>A||||||
1	18934	.	C	T	107.33	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||4525|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||4522|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||4525|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-555G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-565G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-873G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-568G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-568G>A||||||
1	18935	.	G	A	9.81	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||4526|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||4523|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||4526|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-556C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-566C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-874C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-569C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-569C>T||||||
1	18955	.	A	G	132.74	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||4546|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||4543|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||4546|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-576T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-586T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-894T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-589T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-589T>C||||||
1	19004	.	A	G	1166.72	.	AC=63;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||4595|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||4592|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||4595|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-625T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-635T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-943T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-638T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-638T>C||||||
1	19044	.	G	C	31.08	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>C|||||4635|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>C|||||4632|,C|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>C|||||4635|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-665C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-675C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-983C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-678C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-678C>G||||||
1	19051	.	A	G	27.65	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||4642|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||4639|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||4642|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-672T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-682T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-990T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-685T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-685T>C||||||
1	19057	.	G	A	32.07	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||4648|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||4645|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||4648|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-678C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-688C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-996C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-691C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-691C>T||||||
1	19122	.	G	A	5.73	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657G>A|||||4713|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653G>A|||||4710|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483G>A|||||4713|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-743C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-753C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1061C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-756C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-756C>T||||||
1	19172	.	A	G	130.92	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657A>G|||||4763|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653A>G|||||4760|,G|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483A>G|||||4763|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-793T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-803T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1111T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-806T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-806T>C||||||
1	19226	.	T	A	77.55	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>A|||||4817|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>A|||||4814|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>A|||||4817|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-847A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-857A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1165A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-860A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-860A>T||||||
1	19268	.	C	T	117.96	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||4859|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||4856|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||4859|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-889G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-899G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1207G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-902G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-902G>A||||||
1	19279	.	C	T	132.51	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||4870|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||4867|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||4870|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-900G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-910G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1218G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-913G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-913G>A||||||
1	19288	.	C	A	42.16	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>A|||||4879|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>A|||||4876|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>A|||||4879|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-909G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-919G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1227G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-922G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-922G>T||||||
1	19306	.	T	A	57.78	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657T>A|||||4897|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653T>A|||||4894|,A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483T>A|||||4897|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-927A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-937A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1245A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-940A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-940A>T||||||
1	19322	.	C	T	72.1	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.*1657C>T|||||4913|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.*1653C>T|||||4910|,T|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.*1483C>T|||||4913|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-943G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-953G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1261G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-956G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-956G>A||||||
1	19591	.	G	A	22.31	.	AC=1;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1212C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1222C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1530C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1225C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1225C>T||||||
1	19789	.	G	A	196.92	.	AC=4;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1410C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1420C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1728C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1423C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1423C>T||||||
1	19858	.	C	T	3014.65	.	AC=132;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1479G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1489G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1797G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1492G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1492G>A||||||
1	20037	.	A	C	215.74	.	AC=21;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1658T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1668T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-1976T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1671T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1671T>G||||||
1	20096	.	A	C	75.59	.	AC=2;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1717T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1727T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2035T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1730T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1730T>G||||||
1	20129	.	C	T	23044.95	.	AC=255;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1750G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1760G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2068G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1763G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1763G>A||||||
1	20144	.	G	A	23364.45	.	AC=266;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1765C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1775C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2083C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1778C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1778C>T||||||
1	20159	.	A	G	1165.59	.	AC=42;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1780T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1790T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2098T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1793T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1793T>C||||||
1	20166	.	A	G	374.39	.	AC=22;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1787T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1797T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2105T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1800T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1800T>C||||||
1	20191	.	T	G	88.25	.	AC=12;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1812A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1822A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2130A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1825A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1825A>C||||||
1	20206	rs71262675	C	T	890.23	.	AC=75;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1827G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1837G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2145G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1840G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1840G>A||||||
1	20235	.	G	A	1390.39	.	AC=82;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1856C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1866C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2174C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1869C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1869C>T||||||
1	20245	rs71262674	G	A	2478.22	.	AC=135;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1866C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1876C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2184C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1879C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1879C>T||||||
1	20304	rs71262673	G	C	489.18	.	AC=43;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1925C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1935C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2243C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1938C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1938C>G||||||
1	20321	.	A	C	192.54	.	AC=21;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-1942T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-1952T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2260T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-1955T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-1955T>G||||||
1	20467	.	C	T	743.47	.	AC=58;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2088G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2098G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2406G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2101G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2101G>A||||||
1	20512	.	G	T	1123.57	.	AC=84;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2133C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2143C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2451C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2146C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2146C>A||||||
1	20547	.	A	G	926.81	.	AC=50;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2168T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2178T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-2486T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2181T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2181T>C||||||
1	21093	.	C	A	115.02	.	AC=7;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2714G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2724G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3032G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2727G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2727G>T||||||
1	21121	.	G	A	159.01	.	AC=11;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2742C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2752C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3060C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2755C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2755C>T||||||
1	21153	.	G	A	35.23	.	AC=4;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2774C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2784C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3092C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2787C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2787C>T||||||
1	21253	.	G	A	197.1	.	AC=14;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2874C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2884C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3192C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2887C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2887C>T||||||
1	21279	.	C	T	34.97	.	AC=4;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2900G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2910G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3218G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2913G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2913G>A||||||
1	21282	.	C	T	26.39	.	AC=4;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2903G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2913G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3221G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2916G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2916G>A||||||
1	21335	.	T	C	337.21	.	AC=25;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2956A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2966A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3274A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2969A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2969A>G||||||
1	21352	.	T	C	586.5	.	AC=34;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-2973A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-2983A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3291A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-2986A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-2986A>G||||||
1	21386	.	T	C	561.96	.	AC=38;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-3007A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-3017A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.205-3325A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-3020A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-3020A>G||||||
1	21411	.	G	A	509.1	.	AC=32;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-3032C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-3042C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+3327C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-3045C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-3045C>T||||||
1	21420	.	G	A	145.14	.	AC=9;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-3041C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-3051C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+3318C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-3054C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-3054C>T||||||
1	21463	.	T	A	25.94	.	AC=1;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-3084A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-3094A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+3275A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-3097A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-3097A>T||||||
1	21480	.	A	T	47.73	.	AC=7;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-3101T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-3111T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+3258T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-3114T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-3114T>A||||||
1	21503	.	G	T	764.69	.	AC=44;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-3124C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-3134C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+3235C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-3137C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-3137C>A||||||
1	21515	.	T	G	553.01	.	AC=32;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.205-3136A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.154-3146A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+3223A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.192-3149A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.429-3149A>C||||||
1	21580	.	C	T	69.22	.	AC=6;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+3158G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+3154G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+3158G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+3158G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+3157G>A||||||
1	21841	.	C	T	48.02	.	AC=5;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2897G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2893G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2897G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2897G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2896G>A||||||
1	21854	.	A	G	29.18	.	AC=5;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2884T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2880T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2884T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2884T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2883T>C||||||
1	21934	.	A	G	186.94	.	AC=14;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2804T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2800T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2804T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2804T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2803T>C||||||
1	21991	.	A	G	18.57	.	AC=4;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2747T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2743T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2747T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2747T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2746T>C||||||
1	22113	.	T	G	62.7	.	AC=5;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2625A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2621A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2625A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2625A>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2624A>C||||||
1	22158	.	A	G	91.9	.	AC=6;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2580T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2576T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2580T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2580T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2579T>C||||||
1	22195	.	C	G	37.19	.	AC=5;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2543G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2539G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2543G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2543G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2542G>C||||||
1	22249	.	G	C	30.46	.	AC=2;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2489C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2485C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2489C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2489C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2488C>G||||||
1	22378	.	T	C	105.89	.	AC=5;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2360A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2356A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2360A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2360A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2359A>G||||||
1	22392	.	C	T	4.46	.	AC=1;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2346G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2342G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2346G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2346G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2345G>A||||||
1	22494	.	C	T	55.5	.	AC=3;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2244G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2240G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2244G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2244G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2243G>A||||||
1	22529	.	A	C	152.73	.	AC=7;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2209T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2205T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2209T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2209T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2208T>G||||||
1	22533	.	G	T	180.62	.	AC=9;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2205C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2201C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2205C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2205C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2204C>A||||||
1	22713	.	G	A	36.63	.	AC=4;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+2025C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+2021C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+2025C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+2025C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+2024C>T||||||
1	22825	.	C	T	125.9	.	AC=9;ANN=T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1913G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1909G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1913G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1913G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1912G>A||||||
1	22839	.	C	G	52.47	.	AC=5;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1899G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1895G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1899G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1899G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1898G>C||||||
1	22843	.	G	A	60.09	.	AC=5;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1895C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1891C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1895C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1895C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1894C>T||||||
1	22948	.	T	C	11.11	.	AC=2;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1790A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1786A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1790A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1790A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1789A>G||||||
1	22995	.	T	C	51.1	.	AC=6;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1743A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1739A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1743A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1743A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1742A>G||||||
1	23071	.	T	C	155.75	.	AC=12;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1667A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1663A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1667A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1667A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1666A>G||||||
1	23123	.	G	C	29.07	.	AC=3;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1615C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1611C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1615C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1615C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1614C>G||||||
1	23125	.	T	C	183.55	.	AC=14;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1613A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1609A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1613A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1613A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1612A>G||||||
1	23155	.	G	A	30.96	.	AC=3;ANN=A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1583C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1579C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1583C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1583C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1582C>T||||||
1	23200	.	A	C	255.33	.	AC=18;ANN=C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1538T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1534T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1538T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1538T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1537T>G||||||
1	23359	.	C	G	83.21	.	AC=8;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+1379G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+1375G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+1379G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+1379G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+1378G>C||||||
1	23789	.	A	G	6.41	.	AC=1;ANN=G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|2/11|n.204+949T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene|1/8|n.153+945T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|2/9|n.204+949T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|2/10|n.191+949T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|2/12|n.428+948T>C||||||
1	25831	.	A	T	6.41	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>T|||||3723|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>A|||||945|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>T|||||4436|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>T|||||4535|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.51-940T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.51-940T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.38-940T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.274-940T>A||||||
1	26999	.	A	G	794.95	.	AC=49;ANN=G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>G|||||2555|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>C|||||2113|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>G|||||3268|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>G|||||3367|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.51-2108T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.51-2108T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.38-2108T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.274-2108T>C||||||
1	27139	.	C	A	44.17	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1C>A|||||2415|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>T|||||2253|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>A|||||3128|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>A|||||3227|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+2182G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+2182G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.38-2248G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.274-2248G>T||||||
1	27154	.	G	A	9.82	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>A|||||2400|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>T|||||2268|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||3113|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||3212|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+2167C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+2167C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.38-2263C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.274-2263C>T||||||
1	27489	.	C	T	7.1	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1C>T|||||2065|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>A|||||2603|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>T|||||2778|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>T|||||2877|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+1832G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+1832G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+2045G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+2045G>A||||||
1	27969	.	C	T	101.16	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1C>T|||||1585|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>A|||||3083|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>T|||||2298|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>T|||||2397|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+1352G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+1352G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1565G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1565G>A||||||
1	28085	.	C	G	51.57	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1C>G|||||1469|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>C|||||3199|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>G|||||2182|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>G|||||2281|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+1236G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+1236G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1449G>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1449G>C||||||
1	28113	.	T	C	17.06	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1T>C|||||1441|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1A>G|||||3227|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1T>C|||||2154|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1T>C|||||2253|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+1208A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+1208A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1421A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1421A>G||||||
1	28198	.	A	T	1858.05	.	AC=98;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>T|||||1356|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>A|||||3312|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>T|||||2069|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>T|||||2168|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+1123T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+1123T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1336T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1336T>A||||||
1	28251	.	T	C	783.93	.	AC=46;ANN=C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1T>C|||||1303|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1A>G|||||3365|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1T>C|||||2016|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1T>C|||||2115|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+1070A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+1070A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1283A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1283A>G||||||
1	28343	.	G	C	179.13	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>C|||||1211|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>G|||||3457|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>C|||||1924|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>C|||||2023|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+978C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+978C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1191C>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1191C>G||||||
1	28354	.	C	T	138.49	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1C>T|||||1200|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>A|||||3468|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>T|||||1913|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>T|||||2012|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+967G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+967G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1180G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1180G>A||||||
1	28376	.	G	A	539.7	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>A|||||1178|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>T|||||3490|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||1891|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||1990|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+945C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+945C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1158C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1158C>T||||||
1	28420	.	A	T	1037.98	.	AC=55;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>T|||||1134|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>A|||||3534|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>T|||||1847|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>T|||||1946|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+901T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+901T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1114T>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1114T>A||||||
1	28480	.	A	G	46.03	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>G|||||1074|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>C|||||3594|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>G|||||1787|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>G|||||1886|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+841T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+841T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1054T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1054T>C||||||
1	28494	.	T	C	839.45	.	AC=68;ANN=C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1T>C|||||1060|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1A>G|||||3608|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1T>C|||||1773|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1T>C|||||1872|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+827A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+827A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1040A>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1040A>G||||||
1	28511	.	G	A	772.0	.	AC=62;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>A|||||1043|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>T|||||3625|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||1756|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||1855|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+810C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+810C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+1023C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+1023C>T||||||
1	28558	.	C	T	2851.79	.	AC=170;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1C>T|||||996|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>A|||||3672|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>T|||||1709|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>T|||||1808|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+763G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+763G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+976G>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+976G>A||||||
1	28563	.	A	G	11664.04	.	AC=434;ANN=G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>G|||||991|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>C|||||3677|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>G|||||1704|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>G|||||1803|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+758T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+758T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+971T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+971T>C||||||
1	28663	.	T	A	513.13	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1T>A|||||891|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1A>T|||||3777|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1T>A|||||1604|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1T>A|||||1703|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+658A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+658A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+871A>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+871A>T||||||
1	28682	.	G	T	45.47	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>T|||||872|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>A|||||3796|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>T|||||1585|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>T|||||1684|,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+639C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+639C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+852C>A||||||,T|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+852C>A||||||
1	28751	.	G	A	48.72	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>A|||||803|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>T|||||3865|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||1516|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||1615|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+570C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+570C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+783C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+783C>T||||||
1	28835	.	A	G	357.34	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>G|||||719|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>C|||||3949|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>G|||||1432|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>G|||||1531|,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+486T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+486T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+699T>C||||||,G|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+699T>C||||||
1	28863	.	C	A	82.34	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1C>A|||||691|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>T|||||3977|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>A|||||1404|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>A|||||1503|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+458G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+458G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+671G>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+671G>T||||||
1	28875	.	G	A	31.77	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>A|||||679|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>T|||||3989|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||1392|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||1491|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+446C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+446C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+659C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+659C>T||||||
1	28959	.	A	C	10.13	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1A>C|||||595|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1T>G|||||4073|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>C|||||1308|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>C|||||1407|,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+362T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+362T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+575T>G||||||,C|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+575T>G||||||
1	29286	.	G	A	21.07	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.-1G>A|||||268|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>T|||||4400|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||981|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||1080|,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene|1/11|n.50+35C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene|1/9|n.50+35C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene|1/10|n.37+248C>T||||||,A|intron_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/12|n.273+248C>T||||||
1	29633	.	T	C	48.65	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1A>G|||||263|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1A>G|||||4747|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1A>G|||||263|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1A>G|||||63|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1T>C|||||634|,C|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1T>C|||||733|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187A>G|||||4921|,C|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/3|n.80T>C||||||,C|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/13|n.174A>G||||||
1	29790	.	G	A	7.1	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>T|||||420|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1C>T|||||4904|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>T|||||420|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>T|||||220|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||477|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||576|,A|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>T|||||4764|,A|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/3|n.237G>A||||||,A|non_coding_exon_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene|1/13|n.17C>T||||||
1	29881	.	C	G	8.38	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1G>C|||||511|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.-1G>C|||||4995|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1G>C|||||511|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1G>C|||||311|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1G>C|||||75|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>G|||||386|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>G|||||485|,G|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187G>C|||||4673|,G|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/3|n.328C>G||||||
1	29894	.	C	A	201.63	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1G>T|||||524|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1G>T|||||524|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1G>T|||||324|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1G>T|||||88|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1C>A|||||373|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>A|||||472|,A|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187G>T|||||4660|,A|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/3|n.341C>A||||||
1	30067	.	G	A	40.18	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>T|||||697|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>T|||||697|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>T|||||497|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>T|||||261|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1G>A|||||200|,A|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>A|||||299|,A|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>T|||||4487|,A|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.486+28G>A||||||
1	30253	.	A	G	7.1	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1T>C|||||883|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1T>C|||||883|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1T>C|||||683|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1T>C|||||447|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.-1A>G|||||14|,G|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1A>G|||||113|,G|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187T>C|||||4301|,G|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590T>C|||||4992|,G|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.486+214A>G||||||
1	30333	.	C	T	6.41	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1G>A|||||963|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1G>A|||||963|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1G>A|||||763|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1G>A|||||527|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1C>T|||||33|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187G>A|||||4221|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590G>A|||||4912|,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.487-231C>T||||||,T|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/2|n.67C>T||||||
1	30362	.	G	T	6.06	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>A|||||992|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>A|||||992|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>A|||||792|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>A|||||556|,T|upstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.-1G>T|||||4|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>A|||||4192|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>A|||||4883|,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.487-202G>T||||||,T|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/2|n.96G>T||||||
1	30411	.	G	T	141.11	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>A|||||1041|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>A|||||1041|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>A|||||841|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>A|||||605|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>A|||||4143|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>A|||||4834|,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.487-153G>T||||||,T|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/2|n.145G>T||||||,T|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA|1/1|n.46G>T||||||
1	30489	.	G	A	245.98	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>T|||||1119|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>T|||||1119|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>T|||||919|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>T|||||683|,A|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>T|||||4065|,A|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>T|||||4756|,A|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.487-75G>A||||||,A|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/2|n.223G>A||||||,A|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA|1/1|n.124G>A||||||
1	30528	.	C	T	161.31	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1G>A|||||1158|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1G>A|||||1158|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1G>A|||||958|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1G>A|||||722|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187G>A|||||4026|,T|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138C>T|||||25|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590G>A|||||4717|,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.487-36C>T||||||,T|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/2|n.262C>T||||||
1	30548	.	T	G	5878.38	.	AC=186;ANN=G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1A>C|||||1178|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1A>C|||||1178|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1A>C|||||978|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1A>C|||||742|,G|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187A>C|||||4006|,G|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138T>G|||||45|,G|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590A>C|||||4697|,G|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.487-16T>G||||||,G|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/2|n.282T>G||||||
1	30551	.	C	T	805.76	.	AC=51;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1G>A|||||1181|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1G>A|||||1181|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1G>A|||||981|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1G>A|||||745|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187G>A|||||4003|,T|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138C>T|||||48|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590G>A|||||4694|,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|1/2|n.487-13C>T||||||,T|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/2|n.285C>T||||||
1	30728	.	G	T	27.93	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>A|||||1358|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>A|||||1358|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>A|||||1158|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>A|||||922|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>A|||||3826|,T|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>T|||||225|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>A|||||4517|,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.590+61G>T||||||,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.401+61G>T||||||
1	30779	.	T	C	456.31	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1A>G|||||1409|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1A>G|||||1409|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1A>G|||||1209|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1A>G|||||973|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187A>G|||||3775|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138T>C|||||276|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590A>G|||||4466|,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.590+112T>C||||||,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.401+112T>C||||||
1	30781	.	G	C	16.74	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>G|||||1411|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>G|||||1411|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>G|||||1211|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>G|||||975|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>G|||||3773|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>C|||||278|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>G|||||4464|,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.590+114G>C||||||,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.401+114G>C||||||
1	30860	.	G	C	1667.58	.	AC=100;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>G|||||1490|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>G|||||1490|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>G|||||1290|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>G|||||1054|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>G|||||3694|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>C|||||357|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>G|||||4385|,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.591-116G>C||||||,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.402-116G>C||||||
1	30885	.	T	C	1726.96	.	AC=55;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1A>G|||||1515|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1A>G|||||1515|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1A>G|||||1315|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1A>G|||||1079|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187A>G|||||3669|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138T>C|||||382|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590A>G|||||4360|,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.591-91T>C||||||,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.402-91T>C||||||
1	30903	.	A	C	144.95	.	AC=29;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1T>G|||||1533|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1T>G|||||1533|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1T>G|||||1333|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1T>G|||||1097|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187T>G|||||3651|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138A>C|||||400|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590T>G|||||4342|,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.591-73A>C||||||,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.402-73A>C||||||
1	30923	.	G	T	17227.96	.	AC=412;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>A|||||1553|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>A|||||1553|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>A|||||1353|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>A|||||1117|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>A|||||3631|,T|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>T|||||420|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>A|||||4322|,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.591-53G>T||||||,T|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.402-53G>T||||||
1	30926	.	A	C	70.98	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1T>G|||||1556|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1T>G|||||1556|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1T>G|||||1356|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1T>G|||||1120|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187T>G|||||3628|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138A>C|||||423|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590T>G|||||4319|,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.591-50A>C||||||,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.402-50A>C||||||
1	30935	.	T	C	13.05	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1A>G|||||1565|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1A>G|||||1565|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1A>G|||||1365|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1A>G|||||1129|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187A>G|||||3619|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138T>C|||||432|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590A>G|||||4310|,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|2/2|n.591-41T>C||||||,C|intron_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|1/1|n.402-41T>C||||||
1	30993	.	G	C	7.78	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>G|||||1623|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>G|||||1623|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>G|||||1423|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>G|||||1187|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>G|||||3561|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>C|||||490|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>G|||||4252|,C|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|3/3|n.608G>C||||||,C|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|2/2|n.419G>C||||||
1	31029	.	G	A	1628.06	.	AC=87;ANN=A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>T|||||1659|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>T|||||1659|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>T|||||1459|,A|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>T|||||1223|,A|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>T|||||3525|,A|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>A|||||526|,A|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>T|||||4216|,A|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA|3/3|n.644G>A||||||,A|non_coding_exon_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA|2/2|n.455G>A||||||
1	31285	.	A	G	37.5	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1T>C|||||1915|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1T>C|||||1915|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1T>C|||||1715|,G|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1T>C|||||1479|,G|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.*712A>G|||||188|,G|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187T>C|||||3269|,G|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.*535A>G|||||176|,G|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138A>G|||||782|,G|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590T>C|||||3960|,G|intergenic_region|MODIFIER|MIR1302-10-FAM138A|ENSG00000243485-ENSG00000237613|intergenic_region|ENSG00000243485-ENSG00000237613|||||||||
1	31295	.	A	C	1814.54	.	AC=87;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1T>G|||||1925|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1T>G|||||1925|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1T>G|||||1725|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1T>G|||||1489|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.*712A>C|||||198|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187T>G|||||3259|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.*535A>C|||||186|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138A>C|||||792|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590T>G|||||3950|,C|intergenic_region|MODIFIER|MIR1302-10-FAM138A|ENSG00000243485-ENSG00000237613|intergenic_region|ENSG00000243485-ENSG00000237613|||||||||
1	31962	.	G	C	6.41	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>G|||||2592|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>G|||||2592|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>G|||||2392|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>G|||||2156|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.*712G>C|||||865|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>G|||||2592|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.*535G>C|||||853|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>C|||||1459|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>G|||||3283|,C|intergenic_region|MODIFIER|MIR1302-10-FAM138A|ENSG00000243485-ENSG00000237613|intergenic_region|ENSG00000243485-ENSG00000237613|||||||||
1	33357	.	T	C	17.46	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1A>G|||||3987|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1A>G|||||3987|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1A>G|||||3787|,C|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1A>G|||||3551|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.*712T>C|||||2260|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187A>G|||||1197|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.*535T>C|||||2248|,C|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138T>C|||||2854|,C|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590A>G|||||1888|,C|intergenic_region|MODIFIER|MIR1302-10-FAM138A|ENSG00000243485-ENSG00000237613|intergenic_region|ENSG00000243485-ENSG00000237613|||||||||
1	33380	.	G	T	21.85	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.-1C>A|||||4010|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.-1C>A|||||4010|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.-1C>A|||||3810|,T|upstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.-1C>A|||||3574|,T|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000473358|lincRNA||n.*712G>T|||||2283|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.*1187C>A|||||1174|,T|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000469289|lincRNA||n.*535G>T|||||2271|,T|downstream_gene_variant|MODIFIER|MIR1302-10|ENSG00000243485|transcript|ENST00000607096|miRNA||n.*138G>T|||||2877|,T|downstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.*590C>A|||||1865|,T|intergenic_region|MODIFIER|MIR1302-10-FAM138A|ENSG00000243485-ENSG00000237613|intergenic_region|ENSG00000243485-ENSG00000237613|||||||||
1	36851	.	G	C	9.83	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1C>G|||||770|,C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1C>G|||||778|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	36865	.	G	A	10.45	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1C>T|||||784|,A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1C>T|||||792|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37326	.	A	G	49.22	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1T>C|||||1245|,G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1T>C|||||1253|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37332	.	T	G	22.37	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1A>C|||||1251|,G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1A>C|||||1259|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37384	.	T	G	59.83	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1A>C|||||1303|,G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1A>C|||||1311|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37458	.	G	T	84.05	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1C>A|||||1377|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1C>A|||||1385|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37582	.	A	G	5.74	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1T>C|||||1501|,G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1T>C|||||1509|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37624	.	T	C	30.13	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1A>G|||||1543|,C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1A>G|||||1551|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37653	.	C	T	21.36	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||1572|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||1580|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37727	.	C	A	35.71	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>T|||||1646|,A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>T|||||1654|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	37814	.	C	T	126.03	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||1733|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||1741|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	38081	.	G	A	90.49	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1C>T|||||2000|,A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1C>T|||||2008|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	38095	.	C	G	16.41	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>C|||||2014|,G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>C|||||2022|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	38285	.	C	T	163.61	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||2204|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||2212|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	38533	.	G	C	58.59	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1C>G|||||2452|,C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1C>G|||||2460|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	38606	.	A	C	5.08	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1T>G|||||2525|,C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1T>G|||||2533|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	38907	.	C	T	14.96	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||2826|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||2834|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	39224	.	C	T	12.04	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||3143|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||3151|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	39261	.	T	C	178.16	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1A>G|||||3180|,C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1A>G|||||3188|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	39289	.	G	A	14.65	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1C>T|||||3208|,A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1C>T|||||3216|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	39586	.	A	G	7.1	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1T>C|||||3505|,G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1T>C|||||3513|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	39961	.	C	A	22.37	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>T|||||3880|,A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>T|||||3888|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	40160	.	C	G	49.71	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>C|||||4079|,G|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>C|||||4087|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	40244	.	C	T	689.17	.	AC=44;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||4163|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||4171|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	40261	.	C	A	366.26	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>T|||||4180|,A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>T|||||4188|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	40389	.	C	T	12.98	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||4308|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||4316|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	40573	.	A	C	59.42	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1T>G|||||4492|,C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1T>G|||||4500|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	40653	.	T	C	145.88	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1A>G|||||4572|,C|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1A>G|||||4580|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	40706	.	G	A	59.55	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1C>T|||||4625|,A|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1C>T|||||4633|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	41053	.	C	T	863.47	.	AC=57;ANN=T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000417324|lincRNA||n.-1G>A|||||4972|,T|upstream_gene_variant|MODIFIER|FAM138A|ENSG00000237613|transcript|ENST00000461467|lincRNA||n.-1G>A|||||4980|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	41218	.	T	A	72.3	.	AC=8;ANN=A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	41256	.	C	T	94.28	.	AC=8;ANN=T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	41411	.	T	G	32.03	.	AC=4;ANN=G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	41491	.	G	T	34.78	.	AC=4;ANN=T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	41511	.	T	G	37.87	.	AC=5;ANN=G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	41842	.	A	G	9.17	.	AC=1;ANN=G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	44336	.	C	T	9.82	.	AC=1;ANN=T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	44787	.	C	T	7.8	.	AC=1;ANN=T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	44868	.	T	A	7.1	.	AC=1;ANN=A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	45093	.	C	T	8.49	.	AC=1;ANN=T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	45627	.	G	A	102.21	.	AC=6;ANN=A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	45891	.	T	A	23.4	.	AC=3;ANN=A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	46095	.	C	G	464.57	.	AC=25;ANN=G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	46633	.	T	A	2215.43	.	AC=75;ANN=A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	46871	.	A	T	78.63	.	AC=12;ANN=T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	46873	.	A	T	1023.7	.	AC=90;ANN=T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	47159	.	T	C	453.39	.	AC=29;ANN=C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	47960	.	T	A	837.68	.	AC=61;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>A|||||4513|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48180	.	G	A	54.58	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>A|||||4293|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>A|||||4869|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48183	.	C	A	194.94	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>A|||||4290|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>A|||||4866|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48186	.	T	G	301.73	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>G|||||4287|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>G|||||4863|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48448	.	C	T	557.77	.	AC=62;ANN=T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>T|||||4025|,T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>T|||||4601|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48518	.	A	G	105.49	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>G|||||3955|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>G|||||4531|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48937	.	T	C	211.9	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>C|||||3536|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>C|||||4112|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48976	.	A	G	431.16	.	AC=27;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>G|||||3497|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>G|||||4073|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	48979	.	A	G	133.54	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>G|||||3494|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>G|||||4070|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49148	.	A	T	281.35	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>T|||||3325|,T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>T|||||3901|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49156	.	C	A	15.72	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>A|||||3317|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>A|||||3893|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49243	.	G	A	12.7	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>A|||||3230|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>A|||||3806|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49272	.	G	A	588.16	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>A|||||3201|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>A|||||3777|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49291	.	C	T	220.56	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>T|||||3182|,T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>T|||||3758|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49298	.	T	C	22436.48	.	AC=530;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>C|||||3175|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>C|||||3751|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49404	.	C	A	62.41	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>A|||||3069|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>A|||||3645|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49448	.	A	G	145.36	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>G|||||3025|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>G|||||3601|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49482	.	G	A	84.43	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>A|||||2991|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>A|||||3567|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	49554	.	A	G	2136.72	.	AC=79;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>G|||||2919|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>G|||||3495|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	50514	.	A	G	39.85	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>G|||||1959|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>G|||||2535|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	50891	.	T	C	253.13	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>C|||||1582|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>C|||||2158|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51403	.	A	T	74.17	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>T|||||1070|,T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>T|||||1646|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51476	.	T	C	149.71	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>C|||||997|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>C|||||1573|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51479	rs116400033	T	A	10694.87	.	AC=229;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>A|||||994|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>A|||||1570|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51499	.	G	A	26.18	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>A|||||974|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>A|||||1550|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51620	.	A	G	106.54	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1A>G|||||853|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>G|||||1429|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51673	.	T	C	293.84	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>C|||||800|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>C|||||1376|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51740	.	C	G	38.94	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>G|||||733|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>G|||||1309|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51803	rs62637812	T	C	2059.71	.	AC=117;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>C|||||670|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>C|||||1246|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51898	rs76402894	C	A	1038.4	.	AC=55;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>A|||||575|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>A|||||1151|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51914	.	T	G	24.15	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>G|||||559|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>G|||||1135|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51928	rs78732933	G	A	952.86	.	AC=56;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>A|||||545|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>A|||||1121|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51935	.	C	T	100.23	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1C>T|||||538|,T|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>T|||||1114|,T|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	51954	.	G	C	174.34	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>C|||||519|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>C|||||1095|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	52058	rs62637813	G	C	767.62	.	AC=58;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1G>C|||||415|,C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1G>C|||||991|,C|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	52144	.	T	A	155.25	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>A|||||329|,A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>A|||||905|,A|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	52238	.	T	G	24116.5	.	AC=515;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.-1T>G|||||235|,G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>G|||||811|,G|intergenic_region|MODIFIER|FAM138A-OR4G4P|ENSG00000237613-ENSG00000268020|intergenic_region|ENSG00000237613-ENSG00000268020|||||||||
1	52506	.	A	C	450.38	.	AC=40;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1A>C|||||543|,C|non_coding_exon_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene|1/1|n.34A>C||||||
1	52525	.	T	C	390.15	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1T>C|||||524|,C|non_coding_exon_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene|1/1|n.53T>C||||||
1	52711	.	C	A	54.13	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>A|||||338|,A|non_coding_exon_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene|1/1|n.239C>A||||||
1	52727	.	C	G	38.72	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>G|||||322|,G|non_coding_exon_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene|1/1|n.255C>G||||||
1	52863	.	C	A	307.79	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.-1C>A|||||186|,A|non_coding_exon_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene|1/1|n.391C>A||||||
1	53745	.	T	C	187.42	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||433|,C|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.19+678T>C||||||
1	54043	.	C	T	28.65	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||731|,T|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-787C>T||||||
1	54222	.	A	C	80.01	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>C|||||910|,C|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-608A>C||||||
1	54353	.	C	A	411.73	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>A|||||1041|,A|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-477C>A||||||
1	54366	.	A	G	2813.03	.	AC=122;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>G|||||1054|,G|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-464A>G||||||
1	54380	.	T	C	2584.76	.	AC=110;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||1068|,C|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-450T>C||||||
1	54421	.	A	G	10776.45	.	AC=160;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>G|||||1109|,G|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-409A>G||||||
1	54490	.	G	A	9760.35	.	AC=152;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||1178|,A|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-340G>A||||||
1	54564	.	G	T	210.73	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>T|||||1252|,T|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-266G>T||||||
1	54586	rs114201130	T	C	1320.89	.	AC=85;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||1274|,C|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-244T>C||||||
1	54676	rs2462492	C	T	8463.4	.	AC=168;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||1364|,T|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-154C>T||||||
1	54708	rs115797567	G	C	13054.12	.	AC=241;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>C|||||1396|,C|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-122G>C||||||
1	54753	.	T	G	828.35	.	AC=47;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>G|||||1441|,G|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-77T>G||||||
1	54757	.	T	G	571.77	.	AC=28;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>G|||||1445|,G|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-73T>G||||||
1	54815	.	T	C	5.78	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||1503|,C|intron_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|1/1|n.20-15T>C||||||
1	54844	.	G	A	5806.62	.	AC=189;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||1532|,A|non_coding_exon_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|2/2|n.34G>A||||||
1	54933	.	C	G	38.13	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>G|||||1621|,G|non_coding_exon_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene|2/2|n.123C>G||||||
1	54945	.	C	A	33.71	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>A|||||1633|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>A|||||9|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55038	.	C	G	305.29	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>G|||||1726|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>G|||||102|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55085	.	T	A	9177.06	.	AC=248;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>A|||||1773|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>A|||||149|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55105	.	C	T	38.61	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||1793|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||169|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55131	.	A	G	285.84	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>G|||||1819|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>G|||||195|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55164	rs3091274	C	A	19613.44	.	AC=482;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>A|||||1852|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>A|||||228|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55299	rs10399749	C	T	22690.64	.	AC=261;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||1987|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||363|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55313	.	A	T	15.69	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>T|||||2001|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>T|||||377|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55326	rs3107975	T	C	1726.0	.	AC=49;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||2014|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||390|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55330	.	G	A	74.93	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||2018|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||394|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55367	.	G	A	207.2	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||2055|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||431|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55388	.	C	T	95.61	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||2076|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||452|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55394	rs2949420	T	A	110.39	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>A|||||2082|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>A|||||458|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55416	.	G	A	186.5	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||2104|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||480|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55427	.	T	C	77.13	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||2115|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||491|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55545	rs28396308	C	T	2539.11	.	AC=98;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||2233|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||609|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55601	.	T	C	252.14	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||2289|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||665|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55816	.	G	A	21.48	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||2504|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||880|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55850	.	C	G	66.12	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>G|||||2538|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>G|||||914|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55852	.	G	C	503.17	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>C|||||2540|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>C|||||916|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	55926	.	T	C	8814.68	.	AC=337;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||2614|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||990|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56019	.	T	C	333.36	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||2707|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||1083|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56285	.	A	C	39.74	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>C|||||2973|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>C|||||1349|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56381	.	T	C	328.61	.	AC=45;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||3069|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||1445|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56420	.	G	A	440.86	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||3108|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||1484|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56553	.	C	T	9.36	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||3241|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||1617|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56638	.	C	T	1187.38	.	AC=61;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||3326|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||1702|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56644	.	A	C	380.83	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>C|||||3332|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>C|||||1708|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56679	.	A	C	2059.69	.	AC=94;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>C|||||3367|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>C|||||1743|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56799	.	T	C	421.41	.	AC=31;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||3487|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||1863|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56813	.	C	T	17.32	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||3501|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||1877|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	56931	.	C	A	34.84	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>A|||||3619|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>A|||||1995|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57033	.	T	C	22.46	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||3721|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||2097|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57095	.	T	C	178.81	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>C|||||3783|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||2159|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57158	.	G	C	719.45	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>C|||||3846|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>C|||||2222|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57246	.	C	G	238.74	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>G|||||3934|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>G|||||2310|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57292	.	C	T	1233.17	.	AC=40;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||3980|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||2356|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57376	.	C	T	890.36	.	AC=51;ANN=T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840C>T|||||4064|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||2440|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57641	.	A	C	24.12	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>C|||||4329|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>C|||||2705|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57856	.	T	A	11498.7	.	AC=285;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>A|||||4544|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>A|||||2920|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57878	.	T	A	424.12	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840T>A|||||4566|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>A|||||2942|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57952	.	A	C	2757.14	.	AC=158;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>C|||||4996|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>C|||||4640|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>C|||||3016|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	57999	.	G	T	2209.74	.	AC=116;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>T|||||4949|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>T|||||4687|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>T|||||3063|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58030	.	A	G	43.01	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||4918|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>G|||||4718|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>G|||||3094|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58176	.	G	A	650.26	.	AC=46;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||4772|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840G>A|||||4864|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||3240|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58211	.	A	G	4480.66	.	AC=130;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||4737|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000606857|unprocessed_pseudogene||n.*840A>G|||||4899|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>G|||||3275|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58349	.	A	G	132.86	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||4599|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>G|||||3413|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58484	.	G	A	34.17	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||4464|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||3548|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58703	.	A	T	28.54	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>T|||||4245|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>T|||||3767|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58771	.	T	C	11509.0	.	AC=268;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||4177|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||3835|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58814	rs114420996	G	A	10036.74	.	AC=115;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||4134|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126G>A|||||3878|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	58866	.	C	G	6364.83	.	AC=152;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>G|||||4082|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>G|||||3930|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59040	.	T	C	4854.42	.	AC=92;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||3908|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||4104|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59085	.	T	C	132.5	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||3863|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||4149|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59129	.	C	A	196.88	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>A|||||3819|,A|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>A|||||4193|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59193	.	T	G	1461.91	.	AC=79;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>G|||||3755|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>G|||||4257|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59258	.	A	C	93.53	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>C|||||3690|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126A>C|||||4322|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59288	.	C	G	190.66	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>G|||||3660|,G|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>G|||||4352|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59504	.	T	C	102.08	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||3444|,C|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126T>C|||||4568|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59615	.	C	T	658.71	.	AC=63;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||3333|,T|downstream_gene_variant|MODIFIER|OR4G4P|ENSG00000268020|transcript|ENST00000594647|unprocessed_pseudogene||n.*126C>T|||||4679|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	59981	.	G	A	700.01	.	AC=54;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||2967|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60249	.	C	T	244.8	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||2699|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60293	.	T	C	86.09	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||2655|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60332	.	T	C	6010.77	.	AC=167;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||2616|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60351	.	A	G	1510.22	.	AC=53;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||2597|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60379	.	C	T	350.79	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||2569|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60553	.	A	C	14.65	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>C|||||2395|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60655	.	A	G	284.69	.	AC=35;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||2293|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60726	.	C	A	1433.75	.	AC=52;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>A|||||2222|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60811	.	G	C	18.67	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>C|||||2137|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	60833	.	A	G	36.0	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||2115|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61021	.	G	A	10.09	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||1927|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61026	.	G	C	26.42	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>C|||||1922|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61099	.	T	C	1478.86	.	AC=50;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||1849|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61170	.	C	T	41.31	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||1778|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61208	.	T	C	37.69	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||1740|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61219	.	T	C	552.15	.	AC=42;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||1729|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61442	rs74970982	A	G	19693.25	.	AC=468;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||1506|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61462	rs56992750	T	A	2671.41	.	AC=67;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>A|||||1486|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61499	rs75719746	G	A	483.11	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||1449|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61543	.	T	C	32.83	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||1405|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61579	.	G	A	108.92	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||1369|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61706	.	G	C	106.47	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>C|||||1242|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61736	.	A	C	18.07	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>C|||||1212|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61743	.	G	C	121.87	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>C|||||1205|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61819	.	T	C	16.64	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||1129|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61851	.	T	A	892.35	.	AC=67;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>A|||||1097|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61920	rs62637820	G	A	258.25	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||1028|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61987	rs76735897	A	G	7882.31	.	AC=216;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||961|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61989	rs77573425	G	C	8674.76	.	AC=221;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>C|||||959|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	61993	.	C	T	267.95	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||955|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62124	.	G	A	118.29	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||824|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62156	.	C	T	75.52	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||792|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62157	rs10399597	G	A	285.13	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||791|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62159	.	C	T	30.98	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||789|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62162	.	G	A	151.59	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||786|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62203	rs28402963	T	C	17093.68	.	AC=342;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||745|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62271	rs28599927	A	G	1276.0	.	AC=84;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>G|||||677|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62484	.	C	T	78.55	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||464|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62509	.	T	C	264.67	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||439|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62578	.	G	A	559.78	.	AC=44;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||370|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62595	.	C	T	42.63	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||353|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62617	.	T	G	121.59	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>G|||||331|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62716	.	C	T	8.51	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>T|||||232|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62738	.	T	C	7074.7	.	AC=150;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||210|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62745	.	C	G	23.52	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1C>G|||||203|,G|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62777	.	A	T	6166.2	.	AC=208;ANN=T|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1A>T|||||171|,T|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62877	.	T	C	32.52	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1T>C|||||71|,C|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	62905	.	G	A	27.77	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.-1G>A|||||43|,A|intergenic_region|MODIFIER|OR4G4P-OR4G11P|ENSG00000268020-ENSG00000240361|intergenic_region|ENSG00000268020-ENSG00000240361|||||||||
1	63093	.	G	A	378.68	.	AC=9;ANN=A|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.146G>A||||||
1	63126	.	T	G	107.28	.	AC=1;ANN=G|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.179T>G||||||
1	63134	.	G	C	56.27	.	AC=3;ANN=C|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.187G>C||||||
1	63145	.	T	C	59.0	.	AC=2;ANN=C|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.198T>C||||||
1	63174	.	A	T	10.65	.	AC=1;ANN=T|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.227A>T||||||
1	63268	rs75478250	T	C	1281.57	.	AC=90;ANN=C|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.321T>C||||||
1	63276	.	G	A	55.98	.	AC=1;ANN=A|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.329G>A||||||
1	63297	.	G	A	85.54	.	AC=1;ANN=A|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.350G>A||||||
1	63332	.	G	A	107.8	.	AC=14;ANN=A|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.385G>A||||||
1	63336	.	C	T	461.9	.	AC=21;ANN=T|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.389C>T||||||
1	63516	.	A	G	166.36	.	AC=29;ANN=G|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.569A>G||||||
1	63527	.	T	C	474.49	.	AC=38;ANN=C|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.580T>C||||||
1	63615	.	G	C	41.37	.	AC=1;ANN=C|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.668G>C||||||
1	63643	.	A	G	9621.5	.	AC=154;ANN=G|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.696A>G||||||
1	63671	rs116440577	G	A	21351.67	.	AC=197;ANN=A|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.724G>A||||||
1	63697	.	T	C	16102.21	.	AC=247;ANN=C|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.750T>C||||||
1	63722	.	C	T	296.74	.	AC=6;ANN=T|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.775C>T||||||
1	63723	.	G	A	94.95	.	AC=1;ANN=A|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.776G>A||||||
1	63792	.	G	T	107.92	.	AC=10;ANN=T|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.845G>T||||||
1	63880	.	C	T	82.13	.	AC=10;ANN=T|non_coding_exon_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene|1/1|n.933C>T||||||
1	64003	.	T	C	16.55	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>C|||||116|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64025	.	T	C	291.48	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>C|||||138|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64149	.	T	C	115.58	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>C|||||4942|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>C|||||262|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64310	.	A	G	812.93	.	AC=46;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>G|||||4781|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>G|||||423|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64548	.	A	C	278.38	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>C|||||4543|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>C|||||661|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64552	.	G	A	261.39	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>A|||||4539|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>A|||||665|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64613	.	T	A	7812.18	.	AC=187;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||4478|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||726|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64649	.	A	C	318.02	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>C|||||4442|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>C|||||762|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64667	.	T	G	43.02	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>G|||||4424|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>G|||||780|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64670	.	A	G	164.59	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>G|||||4421|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>G|||||783|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64764	.	C	T	646.36	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||4327|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||877|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64798	.	G	T	9.67	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>T|||||4293|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>T|||||911|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64832	.	C	T	654.68	.	AC=42;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||4259|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||945|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64927	.	G	T	317.6	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>T|||||4164|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>T|||||1040|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64931	.	G	A	2420.41	.	AC=76;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>A|||||4160|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>A|||||1044|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	64976	.	C	T	7008.59	.	AC=158;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||4115|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||1089|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	65121	.	G	A	1062.29	.	AC=63;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>A|||||3970|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>A|||||1234|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	65268	.	C	T	381.27	.	AC=37;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||3823|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||1381|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	65529	.	C	T	20.27	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||3562|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||1642|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	65745	.	A	G	1370.08	.	AC=104;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>G|||||3346|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>G|||||1858|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	65797	.	T	C	1248.11	.	AC=93;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>C|||||3294|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>C|||||1910|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	65872	.	T	G	502.83	.	AC=44;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>G|||||3219|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>G|||||1985|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	65974	.	A	G	458.0	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>G|||||3117|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>G|||||2087|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66162	rs62639105	A	T	6133.64	.	AC=238;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>T|||||2929|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>T|||||2275|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66176	rs28552463	T	A	896.78	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||2915|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||2289|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66219	.	A	T	1227.53	.	AC=45;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>T|||||2872|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>T|||||2332|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66275	.	A	T	235.33	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>T|||||2816|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>T|||||2388|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66331	.	A	C	295.62	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>C|||||2760|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>C|||||2444|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66336	.	T	A	27.93	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||2755|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||2449|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66381	.	T	A	126.9	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||2710|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||2494|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66442	.	T	A	122.68	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||2649|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||2555|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66457	rs13328655	T	A	196.82	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||2634|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||2570|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66461	.	T	A	70.51	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||2630|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||2574|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66477	.	T	C	34.91	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>C|||||2614|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>C|||||2590|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66507	rs12401368	T	A	1109.8	.	AC=40;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||2584|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||2620|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66814	.	A	G	267.98	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>G|||||2277|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>G|||||2927|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66861	.	C	T	1527.4	.	AC=61;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||2230|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||2974|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	66876	.	T	G	1543.97	.	AC=89;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>G|||||2215|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>G|||||2989|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67179	.	C	G	291.16	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>G|||||1912|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>G|||||3292|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67181	rs77662731	A	G	7518.93	.	AC=97;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>G|||||1910|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>G|||||3294|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67224	.	G	A	447.51	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>A|||||1867|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>A|||||3337|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67232	.	C	A	186.19	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>A|||||1859|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>A|||||3345|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67242	.	A	C	91.6	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>C|||||1849|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>C|||||3355|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67400	.	G	A	79.96	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>A|||||1691|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>A|||||3513|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67631	.	G	C	749.07	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>C|||||1460|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>C|||||3744|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67948	.	T	C	8.49	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>C|||||1143|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>C|||||4061|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	67955	.	T	A	36.54	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>A|||||1136|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>A|||||4068|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68084	.	A	T	16.96	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>T|||||1007|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>T|||||4197|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68179	.	A	T	400.11	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1A>T|||||912|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940A>T|||||4292|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68247	.	G	A	25.4	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>A|||||844|,A|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940G>A|||||4360|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68337	.	C	G	41.5	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>G|||||754|,G|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>G|||||4450|,G|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68362	.	C	T	93.48	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||729|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||4475|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68705	.	T	C	53.29	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>C|||||386|,C|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940T>C|||||4818|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68849	.	C	T	302.39	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1C>T|||||242|,T|downstream_gene_variant|MODIFIER|OR4G11P|ENSG00000240361|transcript|ENST00000492842|unprocessed_pseudogene||n.*940C>T|||||4962|,T|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68894	.	T	C	110.28	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1T>C|||||197|,C|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	68896	.	G	A	143.47	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.-1G>A|||||195|,A|intergenic_region|MODIFIER|OR4G11P-OR4F5|ENSG00000240361-ENSG00000186092|intergenic_region|ENSG00000240361-ENSG00000186092|||||||||
1	69270	.	A	G	3078.94	.	AC=151;ANN=G|synonymous_variant|LOW|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.180A>G|p.Ser60Ser|180/918|180/918|60/305||
1	69496	.	G	A	67.24	.	AC=1;ANN=A|missense_variant|MODERATE|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.406G>A|p.Gly136Ser|406/918|406/918|136/305||
1	69511	rs75062661	A	G	6905.14	.	AC=290;ANN=G|missense_variant|MODERATE|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.421A>G|p.Thr141Ala|421/918|421/918|141/305||
1	69534	.	T	C	11.12	.	AC=2;ANN=C|synonymous_variant|LOW|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.444T>C|p.His148His|444/918|444/918|148/305||
1	69751	.	C	T	139.74	.	AC=11;ANN=T|missense_variant|MODERATE|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.661C>T|p.Arg221Cys|661/918|661/918|221/305||
1	69849	.	G	A	454.73	.	AC=33;ANN=A|stop_gained|HIGH|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.759G>A|p.Trp253*|759/918|759/918|253/305||
1	69897	.	T	C	5570.75	.	AC=245;ANN=C|synonymous_variant|LOW|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.807T>C|p.Ser269Ser|807/918|807/918|269/305||
1	69968	.	A	G	24.81	.	AC=8;ANN=G|missense_variant|MODERATE|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding|1/1|c.878A>G|p.Gln293Arg|878/918|878/918|293/305||
1	70246	.	A	G	116.5	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>G|||||238|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	70300	.	C	T	813.66	.	AC=42;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||292|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	70317	.	G	A	719.63	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>A|||||309|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	70352	.	A	T	62.56	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>T|||||344|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	70665	.	C	T	30.47	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||657|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	70728	.	C	T	267.01	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||720|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	71192	.	A	G	47.9	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>G|||||1184|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	71336	.	G	A	81.07	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>A|||||1328|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	71710	.	A	G	544.73	.	AC=32;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>G|||||1702|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	71745	.	T	C	419.15	.	AC=25;ANN=C|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>C|||||1737|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	71875	.	G	A	311.63	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>A|||||1867|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72052	.	A	G	138.77	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>G|||||2044|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72106	.	T	C	2035.22	.	AC=70;ANN=C|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>C|||||2098|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72148	.	C	T	101.41	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||2140|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72195	.	C	G	62.11	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>G|||||2187|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72336	.	T	C	47.49	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>C|||||2328|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72403	.	T	C	131.74	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>C|||||2395|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72526	.	A	G	238.47	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>G|||||2518|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72787	.	C	T	4462.91	.	AC=187;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||2779|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	72862	.	G	A	136.01	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>A|||||2854|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73088	.	T	C	152.95	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>C|||||3080|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73093	.	G	A	253.98	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>A|||||3085|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73158	.	C	T	29.28	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||3150|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73445	.	G	T	6.02	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>T|||||3437|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73490	.	T	C	337.63	.	AC=22;ANN=C|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>C|||||3482|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73649	.	C	G	300.81	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>G|||||3641|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73822	.	A	G	495.8	.	AC=32;ANN=G|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>G|||||3814|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73836	.	G	A	14.19	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>A|||||3828|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73841	.	C	T	6275.6	.	AC=218;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||3833|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	73999	.	C	T	32.38	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||3991|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	74091	.	C	T	544.32	.	AC=34;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||4083|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	74092	.	G	A	72.14	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>A|||||4084|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	74161	.	C	T	176.47	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918C>T|||||4153|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	74240	.	T	C	275.53	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>C|||||4232|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	74619	.	T	A	4.62	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918T>A|||||4611|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	74681	rs13328683	G	T	4105.6	.	AC=119;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918G>T|||||4673|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	74974	.	A	T	39.98	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|OR4F5|ENSG00000186092|transcript|ENST00000335137|protein_coding||c.*918A>T|||||4966|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	75032	.	G	C	19.56	.	AC=2;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	75084	.	A	G	1377.16	.	AC=66;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	75767	.	G	A	309.1	.	AC=15;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76002	.	T	A	123.24	.	AC=4;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76024	.	C	A	2398.99	.	AC=74;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76057	.	A	G	246.0	.	AC=19;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76061	.	C	T	758.17	.	AC=21;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76099	.	C	T	290.24	.	AC=6;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76206	.	T	C	524.25	.	AC=37;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76240	.	A	G	1151.79	.	AC=62;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76257	.	C	A	27.51	.	AC=1;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76260	.	G	T	1053.09	.	AC=45;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76308	.	C	T	526.43	.	AC=33;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76811	.	G	C	195.4	.	AC=16;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76838	.	T	G	3178.24	.	AC=74;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76846	.	T	A	80.46	.	AC=14;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	76854	.	A	G	2197.64	.	AC=54;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77033	.	G	T	74.36	.	AC=9;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77035	.	C	T	11.41	.	AC=6;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77089	.	C	T	6213.59	.	AC=155;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77110	.	A	G	31.94	.	AC=7;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77130	.	G	A	46.37	.	AC=1;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77201	.	A	G	11.53	.	AC=6;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77462	.	G	A	1931.21	.	AC=89;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77470	.	T	C	42.06	.	AC=1;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77492	.	A	G	2315.73	.	AC=117;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77568	.	C	A	1656.43	.	AC=81;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77646	.	C	G	1446.05	.	AC=40;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77706	.	A	T	205.01	.	AC=7;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77726	.	C	T	52.95	.	AC=4;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77763	.	G	A	190.77	.	AC=19;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77866	.	C	T	1092.79	.	AC=49;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77874	.	G	A	915.99	.	AC=49;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	77961	rs78385339	G	A	5462.65	.	AC=138;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78391	.	A	G	21.06	.	AC=1;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78510	.	T	C	185.79	.	AC=14;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78633	.	C	A	328.39	.	AC=22;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78797	.	A	G	64.65	.	AC=11;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78823	.	A	G	214.96	.	AC=23;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78895	.	G	A	63.74	.	AC=8;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78923	.	T	G	668.85	.	AC=31;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78942	.	C	G	529.11	.	AC=25;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78951	.	C	A	131.15	.	AC=11;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	78968	.	A	G	84.89	.	AC=13;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79033	rs62641298	A	G	891.6	.	AC=56;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79050	rs62641299	G	T	870.13	.	AC=59;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79137	.	A	T	1619.03	.	AC=47;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79417	.	C	T	105.97	.	AC=3;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79418	rs2691296	G	C	88.17	.	AC=13;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79595	.	C	T	6.68	.	AC=1;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79629	.	A	C	23.09	.	AC=1;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79759	.	T	C	83.61	.	AC=2;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79772	.	C	G	1141.96	.	AC=51;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79776	.	C	T	25.92	.	AC=1;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79858	.	T	C	31.2	.	AC=1;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79872	.	T	G	187.7	.	AC=8;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79911	.	A	G	34.45	.	AC=1;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	79935	.	C	G	119.93	.	AC=8;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80054	.	G	A	68.56	.	AC=3;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80141	.	A	G	792.23	.	AC=35;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80323	rs3942603	G	C	153.33	.	AC=14;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80346	.	C	G	935.72	.	AC=56;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80386	rs3878915	C	A	58.41	.	AC=7;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80454	.	G	C	98.11	.	AC=4;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80661	.	C	G	38.65	.	AC=1;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80808	.	C	T	527.72	.	AC=38;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80857	.	C	T	1399.77	.	AC=78;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	80867	.	G	C	208.49	.	AC=24;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81032	.	G	A	56.45	.	AC=5;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81038	.	G	T	68.17	.	AC=1;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81100	.	T	G	7.69	.	AC=5;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81155	.	C	T	45.64	.	AC=1;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81260	.	C	T	78.41	.	AC=13;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81343	.	A	G	7674.77	.	AC=154;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81547	.	T	C	30.54	.	AC=6;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81587	.	C	T	769.67	.	AC=35;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81602	.	C	T	177.31	.	AC=7;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81646	.	G	A	13.46	.	AC=1;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81663	.	T	A	388.16	.	AC=27;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81703	.	T	C	160.97	.	AC=15;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81832	.	C	G	155.59	.	AC=8;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81836	rs2259560	A	T	99.58	.	AC=11;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81949	.	T	C	94.45	.	AC=1;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	81950	.	T	C	89.01	.	AC=11;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82065	.	T	C	28.06	.	AC=1;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82110	.	A	G	5.37	.	AC=1;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82115	.	A	G	68.2	.	AC=13;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82126	rs1815133	C	T	71.37	.	AC=15;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82162	rs1815132	C	A	104.45	.	AC=19;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82163	.	G	A	506.64	.	AC=36;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82249	rs1851945	A	G	777.31	.	AC=55;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82303	rs3871776	T	C	516.27	.	AC=30;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82343	.	T	C	26.67	.	AC=2;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82365	.	G	A	38.51	.	AC=2;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82400	.	G	A	1125.82	.	AC=54;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82562	.	T	C	614.99	.	AC=36;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82609	.	C	G	1821.3	.	AC=53;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82652	.	C	G	33.86	.	AC=3;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82676	.	T	G	2598.64	.	AC=74;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82734	rs4030331	T	C	6656.8	.	AC=152;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82800	.	C	T	161.68	.	AC=16;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82956	.	A	T	227.37	.	AC=9;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82957	.	C	T	106.08	.	AC=8;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82961	.	C	T	397.47	.	AC=14;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82981	.	A	G	144.91	.	AC=15;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	82994	.	A	G	166.33	.	AC=6;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83013	.	T	G	43.91	.	AC=11;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83057	.	T	C	316.08	.	AC=18;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83084	.	T	A	18196.12	.	AC=427;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83088	.	G	C	26.01	.	AC=1;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83443	.	C	T	483.24	.	AC=31;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83514	.	C	T	15432.84	.	AC=289;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83606	.	G	A	499.42	.	AC=37;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83771	.	T	G	663.46	.	AC=22;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83797	.	A	G	13.45	.	AC=5;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83906	.	A	G	148.58	.	AC=14;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83915	.	G	A	108.27	.	AC=11;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83923	.	A	G	92.93	.	AC=15;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83933	.	A	G	42.09	.	AC=9;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83937	.	A	G	37.68	.	AC=9;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83977	.	A	G	98.51	.	AC=1;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	83998	.	G	A	592.47	.	AC=40;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84002	rs28850140	G	A	6859.26	.	AC=124;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84006	.	G	A	1470.62	.	AC=63;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84010	.	G	A	1480.08	.	AC=45;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84022	.	G	C	110.98	.	AC=3;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84030	.	G	C	42.19	.	AC=1;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84032	.	A	G	10.3	.	AC=1;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84079	.	T	C	136.51	.	AC=6;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84097	.	T	A	82.7	.	AC=6;ANN=A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84116	.	G	C	19.37	.	AC=3;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84133	.	A	T	459.27	.	AC=24;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84139	.	A	T	817.31	.	AC=25;ANN=T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84156	.	A	C	98.53	.	AC=2;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84183	.	C	G	98.7	.	AC=7;ANN=G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84230	.	T	C	183.8	.	AC=15;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84244	.	A	C	2633.85	.	AC=72;ANN=C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84295	.	G	A	201.21	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||5000|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84307	.	C	A	998.37	.	AC=45;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>T|||||4988|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84346	.	T	C	92.13	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||4949|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84453	.	C	G	85.54	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>C|||||4842|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84492	.	C	G	997.33	.	AC=51;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>C|||||4803|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84618	.	C	T	371.52	.	AC=17;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||4677|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||4933|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84683	.	A	G	828.36	.	AC=48;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>C|||||4612|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>C|||||4868|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84705	.	T	G	66.16	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>C|||||4590|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>C|||||4846|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	84771	.	G	A	390.7	.	AC=26;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||4524|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||4780|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85022	.	G	A	277.29	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||4273|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||4529|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85063	.	T	C	674.73	.	AC=34;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||4232|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||4488|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85200	rs4030343	T	C	1053.25	.	AC=47;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||4095|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||4351|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85212	.	A	C	60.66	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>G|||||4083|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>G|||||4339|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85406	.	C	T	186.13	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||3889|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||4145|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85420	rs4030341	T	G	22.08	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>C|||||3875|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>C|||||4131|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85431	.	A	C	218.21	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>G|||||3864|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>G|||||4120|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85529	.	G	A	1176.73	.	AC=69;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||3766|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||4022|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85597	.	A	C	2348.19	.	AC=68;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>G|||||3698|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>G|||||3954|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85622	.	A	T	120.74	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>A|||||3673|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>A|||||3929|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	85892	.	A	G	903.89	.	AC=24;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>C|||||3403|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>C|||||3659|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86000	.	A	C	440.84	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>G|||||3295|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>G|||||3551|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86018	.	C	G	6309.65	.	AC=73;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>C|||||3277|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>C|||||3533|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86028	rs114608975	T	C	2389.9	.	AC=55;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||3267|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||3523|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86064	.	G	A	136.15	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||3231|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||3487|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86065	rs116504101	G	C	2600.45	.	AC=54;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>G|||||3230|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>G|||||3486|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86192	.	G	A	523.15	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||3103|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||3359|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86282	.	T	G	82.19	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>C|||||3013|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>C|||||3269|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86303	rs2949417	G	T	5518.09	.	AC=82;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>A|||||2992|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>A|||||3248|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86331	rs115209712	A	G	7367.06	.	AC=101;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>C|||||2964|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>C|||||3220|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86605	.	G	A	21.6	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||2690|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||2946|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86656	.	G	T	301.83	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>A|||||2639|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>A|||||2895|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86749	.	A	G	517.16	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>C|||||2546|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>C|||||2802|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86788	.	G	A	545.93	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||2507|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||2763|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86947	.	T	C	290.97	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||2348|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||2604|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	86982	.	G	A	120.16	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||2313|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||2569|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87021	.	T	C	285.83	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||2274|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||2530|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87178	.	A	T	22.21	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>A|||||2117|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>A|||||2373|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87190	rs1524602	G	A	13941.58	.	AC=235;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||2105|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||2361|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87259	.	G	A	6.03	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||2036|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||2292|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||4971|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87303	rs113433457	G	A	147.95	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||1992|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||2248|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||4927|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87360	.	C	T	226.5	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||1935|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||2191|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||4870|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87377	.	G	C	11.31	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>G|||||1918|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>G|||||2174|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>G|||||4853|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87409	.	C	T	639.19	.	AC=38;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||1886|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||2142|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||4821|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87486	.	T	G	355.81	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>C|||||1809|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>C|||||2065|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>C|||||4744|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87590	.	G	A	23.87	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||1705|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1961|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||4640|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87647	.	T	C	4922.27	.	AC=92;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||1648|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||1904|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||4583|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87755	.	G	A	766.48	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||1540|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1796|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||4475|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87970	.	T	C	57.18	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||1325|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||1581|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||4260|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	87978	.	G	A	35.28	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||1317|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1573|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||4252|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88136	rs59529791	G	A	1374.71	.	AC=63;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||1159|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1415|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||4094|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88144	.	C	A	177.16	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>T|||||1151|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>T|||||1407|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>T|||||4086|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88169	rs940550	C	T	8704.89	.	AC=176;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||1126|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||1382|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||4061|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88172	rs940551	G	A	658.64	.	AC=38;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||1123|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1379|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||4058|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88177	.	G	C	711.89	.	AC=37;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>G|||||1118|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>G|||||1374|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>G|||||4053|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88188	.	C	A	218.23	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>T|||||1107|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>T|||||1363|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>T|||||4042|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88236	.	C	T	506.43	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||1059|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||1315|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||3994|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88250	.	T	A	58.0	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>T|||||1045|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>T|||||1301|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>T|||||3980|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88316	rs113759966	G	A	2406.57	.	AC=75;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||979|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1235|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||3914|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88324	.	A	G	21.05	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>C|||||971|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>C|||||1227|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>C|||||3906|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88338	rs55700207	G	A	6532.92	.	AC=96;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||957|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1213|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||3892|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88370	.	G	A	138.6	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748C>T|||||925|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||1181|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||3860|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88376	.	T	G	17.89	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>C|||||919|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>C|||||1175|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>C|||||3854|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88388	.	C	T	129.07	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||907|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||1163|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||3842|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88429	.	T	C	85.2	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>G|||||866|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||1122|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||3801|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88696	.	C	T	63.39	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||599|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||855|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||3534|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88710	.	C	G	440.3	.	AC=27;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>C|||||585|,G|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>C|||||841|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>C|||||3520|,G|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88767	.	C	T	70.16	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748G>A|||||528|,T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||784|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||3463|,T|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	88794	.	T	A	420.05	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748A>T|||||501|,A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>T|||||757|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>T|||||3436|,A|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	89165	.	A	C	70.23	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.*2748T>G|||||130|,C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319T>G|||||386|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>G|||||3065|,C|intergenic_region|MODIFIER|OR4F5-RP11-34P13.7|ENSG00000186092-ENSG00000238009|intergenic_region|ENSG00000186092-ENSG00000238009|||||||||
1	89328	.	T	C	117.83	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||223|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||2902|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2715A>G||||||
1	89395	.	G	T	46.37	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>A|||||156|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>A|||||2835|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2648C>A||||||
1	89459	.	G	A	23.51	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319C>T|||||92|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||2771|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2584C>T||||||
1	89488	.	T	C	89.73	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319A>G|||||63|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||2742|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2555A>G||||||
1	89518	.	C	T	96.44	.	AC=17;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.*1319G>A|||||33|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||2712|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2525G>A||||||
1	89599	.	A	T	352.98	.	AC=26;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>A|||||2631|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2444T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.1271T>A||||||
1	89635	.	G	A	17.24	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||2595|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2408C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.1235C>T||||||
1	89639	.	T	C	130.03	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||2591|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2404A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.1231A>G||||||
1	89744	.	A	G	28.44	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>C|||||2486|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2299T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.1126T>C||||||
1	89794	.	T	C	74.96	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||2436|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2249A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.1076A>G||||||
1	89946	.	A	T	6676.33	.	AC=150;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>A|||||2284|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2097T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.924T>A||||||
1	89956	.	G	C	32.26	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>G|||||2274|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2087C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.914C>G||||||
1	90007	.	G	A	1514.51	.	AC=58;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||2223|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.2036C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|2/2|n.863C>T||||||
1	90051	.	C	T	2653.89	.	AC=81;ANN=T|splice_acceptor_variant&intron_variant|HIGH|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/1|n.820-1G>A||||||,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||2179|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.1992G>A||||||
1	90068	.	G	A	38.82	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||2162|,A|intron_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/1|n.820-18C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.1975C>T||||||
1	90160	.	C	T	935.1	.	AC=47;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||2070|,T|intron_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/1|n.820-110G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.1883G>A||||||
1	90199	rs78751575	A	T	170.9	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>A|||||2031|,T|intron_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/1|n.819+88T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.1844T>A||||||
1	90258	.	A	T	37.62	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>A|||||1972|,T|intron_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/1|n.819+29T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.1785T>A||||||
1	90457	.	C	T	58.45	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||1773|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.1586G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/2|n.649G>A||||||
1	90957	.	A	C	53.86	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>G|||||1273|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.1086T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/2|n.149T>G||||||
1	91047	.	A	G	44.03	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>C|||||1183|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.996T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/2|n.59T>C||||||
1	91064	.	T	G	144.54	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>C|||||1166|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.979A>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/2|n.42A>C||||||
1	91095	.	T	A	39.31	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>T|||||1135|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.948A>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA|1/2|n.11A>T||||||
1	91106	.	A	G	127.26	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||1|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>C|||||1124|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.937T>C||||||
1	91141	.	G	T	257.43	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>A|||||36|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>A|||||1089|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.902C>A||||||
1	91176	.	C	A	1433.63	.	AC=73;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>T|||||71|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>T|||||1054|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.867G>T||||||
1	91189	.	C	T	9.14	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||84|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||1041|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.854G>A||||||
1	91190	.	G	A	824.77	.	AC=40;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||85|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||1040|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.853C>T||||||
1	91214	.	T	A	1524.64	.	AC=71;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>T|||||109|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>T|||||1016|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.829A>T||||||
1	91228	.	A	G	72.05	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||123|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>C|||||1002|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.815T>C||||||
1	91233	.	C	T	46.19	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||128|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||997|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.810G>A||||||
1	91246	.	T	C	11.73	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||141|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||984|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.797A>G||||||
1	91256	.	A	G	393.18	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||151|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>C|||||974|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.787T>C||||||
1	91264	.	A	C	37.66	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>G|||||159|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>G|||||966|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.779T>G||||||
1	91268	.	G	A	389.25	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||163|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||962|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.775C>T||||||
1	91276	.	G	C	548.87	.	AC=34;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>G|||||171|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>G|||||954|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.767C>G||||||
1	91303	.	C	T	65.99	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||198|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||927|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.740G>A||||||
1	91336	rs4245763	A	T	499.69	.	AC=40;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>A|||||231|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>A|||||894|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.707T>A||||||
1	91354	rs4245764	G	A	295.5	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||249|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||876|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.689C>T||||||
1	91421	rs28619159	T	C	1260.67	.	AC=56;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||316|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||809|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.622A>G||||||
1	91472	rs6680825	C	T	354.07	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||367|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||758|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.571G>A||||||
1	91475	.	G	A	23.36	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||370|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||755|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.568C>T||||||
1	91515	.	A	C	1202.92	.	AC=75;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>G|||||410|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>G|||||715|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.528T>G||||||
1	91536	rs77418980	G	T	5042.46	.	AC=140;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>A|||||431|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>A|||||694|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.507C>A||||||
1	91560	.	T	C	11.38	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||455|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||670|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.483A>G||||||
1	91581	.	G	A	5661.86	.	AC=132;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||476|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||649|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.462C>T||||||
1	91605	.	C	T	5236.48	.	AC=90;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||500|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||625|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|4/4|n.438G>A||||||
1	91685	.	G	A	245.28	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||580|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||545|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.414-56C>T||||||
1	91731	.	G	A	478.55	.	AC=42;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||626|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||499|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.414-102C>T||||||
1	91842	.	C	T	13.27	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||737|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||388|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.414-213G>A||||||
1	91949	.	G	A	80.07	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||844|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>T|||||281|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.413+142C>T||||||
1	91986	.	C	T	85.94	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||881|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491G>A|||||244|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.413+105G>A||||||
1	91992	.	G	C	726.84	.	AC=51;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>G|||||887|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>G|||||238|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.413+99C>G||||||
1	92004	.	A	G	66.77	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||899|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491T>C|||||226|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.413+87T>C||||||
1	92084	.	G	C	79.69	.	AC=5;ANN=C|splice_region_variant&intron_variant|LOW|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/3|n.413+7C>G||||||,C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>G|||||979|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491C>G|||||146|
1	92140	.	T	C	170.36	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||1035|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.*491A>G|||||90|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|3/4|n.364A>G||||||
1	92316	.	G	A	110.8	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||1211|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-76C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-76C>T||||||
1	92384	.	G	A	44.12	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||1279|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-144C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-144C>T||||||
1	92481	.	G	A	125.56	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||1376|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-241C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-241C>T||||||
1	92633	.	C	T	1508.07	.	AC=45;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||1528|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-393G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-393G>A||||||
1	92638	.	A	T	5161.66	.	AC=140;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>A|||||1533|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-398T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-398T>A||||||
1	92654	.	T	C	278.34	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||1549|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-414A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-414A>G||||||
1	92675	.	A	G	531.1	.	AC=50;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||1570|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-435T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-435T>C||||||
1	92771	.	G	T	35.13	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>A|||||1666|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-531C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-531C>A||||||
1	92794	rs4628451	A	G	154.67	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||1689|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-554T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-554T>C||||||
1	92858	.	G	T	7624.82	.	AC=165;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>A|||||1753|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-618C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-618C>A||||||
1	92870	.	A	G	20.54	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||1765|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-630T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-630T>C||||||
1	92875	.	T	C	59.33	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||1770|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-635A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-635A>G||||||
1	92926	.	T	C	145.7	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||1821|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-686A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-686A>G||||||
1	93097	.	C	T	94.3	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||1992|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-857G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-857G>A||||||
1	93279	.	C	T	22.06	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||2174|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-1039G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-1039G>A||||||
1	93605	.	A	C	195.49	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>G|||||2500|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-1365T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-1365T>G||||||
1	94029	.	G	A	5981.55	.	AC=96;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||2924|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-1789C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-1789C>T||||||
1	94101	.	C	A	285.14	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>T|||||2996|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-1861G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-1861G>T||||||
1	94134	.	C	T	29.63	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||3029|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-1894G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-1894G>A||||||
1	94271	.	C	G	88.69	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>C|||||3166|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2031G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2031G>C||||||
1	94491	.	T	C	56.93	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1A>G|||||3386|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2251A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2251A>G||||||
1	94531	.	A	G	249.2	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||3426|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2291T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2291T>C||||||
1	94582	.	C	T	133.82	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||3477|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2342G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2342G>A||||||
1	94641	.	G	C	1748.67	.	AC=81;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>G|||||3536|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2401C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2401C>G||||||
1	94893	rs76199007	A	G	168.29	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||3788|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2653T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2653T>C||||||
1	94986	.	C	T	573.32	.	AC=43;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>A|||||3881|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2746G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2746G>A||||||
1	94991	.	G	A	119.22	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||3886|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2751C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2751C>T||||||
1	95046	.	G	A	352.8	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||3941|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2806C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2806C>T||||||
1	95068	.	G	A	190.13	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||3963|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2828C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2828C>T||||||
1	95083	rs77653505	G	A	292.18	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||3978|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-2843C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-2843C>T||||||
1	95440	.	C	G	2882.1	.	AC=128;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>C|||||4335|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-3200G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-3200G>C||||||
1	95599	.	A	G	491.55	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1T>C|||||4494|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-3359T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-3359T>C||||||
1	95897	.	C	A	86.72	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1G>T|||||4792|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-3657G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-3657G>T||||||
1	95972	.	G	A	53.39	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.8|ENSG00000239945|transcript|ENST00000495576|lincRNA||n.-1C>T|||||4867|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-3732C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-3732C>T||||||
1	96179	.	G	C	129.38	.	AC=13;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-3939C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-3939C>G||||||
1	96529	.	G	A	142.14	.	AC=13;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-4289C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-4289C>T||||||
1	96576	.	G	A	30.22	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-4336C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-4336C>T||||||
1	96592	.	T	C	489.11	.	AC=37;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-4352A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-4352A>G||||||
1	96644	.	G	A	64.45	.	AC=3;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-4404C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-4404C>T||||||
1	97505	.	G	T	62.48	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-5265C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-5265C>A||||||
1	97546	.	T	C	267.5	.	AC=16;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-5306A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-5306A>G||||||
1	98023	.	T	G	17.73	.	AC=4;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-5783A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-5783A>C||||||
1	98325	.	G	A	273.71	.	AC=15;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6085C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6085C>T||||||
1	98583	.	T	A	15546.71	.	AC=208;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6343A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6343A>T||||||
1	98591	.	A	T	1212.05	.	AC=55;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6351T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6351T>A||||||
1	98683	.	G	A	5492.49	.	AC=148;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6443C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6443C>T||||||
1	98710	.	C	T	21.09	.	AC=4;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6470G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6470G>A||||||
1	98841	.	G	A	65.42	.	AC=8;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6601C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6601C>T||||||
1	98903	.	G	C	41.49	.	AC=5;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6663C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6663C>G||||||
1	98929	rs12184306	A	G	2647.04	.	AC=109;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6689T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6689T>C||||||
1	98945	rs75356303	C	T	1952.12	.	AC=87;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6705G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6705G>A||||||
1	98946	.	C	G	278.46	.	AC=4;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6706G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6706G>C||||||
1	98957	.	G	A	31.91	.	AC=6;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6717C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6717C>T||||||
1	98974	rs12184307	A	G	1487.15	.	AC=74;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6734T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6734T>C||||||
1	98993	rs1851939	G	A	1357.63	.	AC=64;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6753C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6753C>T||||||
1	99055	.	C	A	6711.25	.	AC=155;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6815G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6815G>T||||||
1	99196	.	C	T	337.28	.	AC=24;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6956G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6956G>A||||||
1	99219	.	G	A	59.27	.	AC=10;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-6979C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-6979C>T||||||
1	99325	.	C	T	244.36	.	AC=10;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7085G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7085G>A||||||
1	99411	.	C	T	14.21	.	AC=4;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7171G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7171G>A||||||
1	99671	.	A	T	359.01	.	AC=13;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7431T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7431T>A||||||
1	99687	.	C	T	1373.5	.	AC=50;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7447G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7447G>A||||||
1	99719	.	C	T	330.16	.	AC=11;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7479G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7479G>A||||||
1	99731	.	T	C	202.71	.	AC=8;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7491A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7491A>G||||||
1	99770	.	G	T	39.61	.	AC=4;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7530C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7530C>A||||||
1	99875	.	G	A	13.07	.	AC=4;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7635C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7635C>T||||||
1	100077	.	A	G	21.42	.	AC=4;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-7837T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-7837T>C||||||
1	100345	.	T	C	50.92	.	AC=2;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8105A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8105A>G||||||
1	100483	.	C	T	1159.15	.	AC=46;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8243G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8243G>A||||||
1	100676	.	A	T	84.96	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8436T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8436T>A||||||
1	100686	.	A	G	27.04	.	AC=4;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8446T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8446T>C||||||
1	100858	.	T	C	66.95	.	AC=2;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8618A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8618A>G||||||
1	101038	.	A	G	342.1	.	AC=31;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8798T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8798T>C||||||
1	101053	.	C	T	296.84	.	AC=25;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8813G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8813G>A||||||
1	101111	rs78180088	G	T	308.17	.	AC=26;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8871C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8871C>A||||||
1	101148	.	G	A	53.28	.	AC=6;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8908C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8908C>T||||||
1	101158	.	T	C	963.41	.	AC=68;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8918A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8918A>G||||||
1	101207	.	T	G	214.73	.	AC=21;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-8967A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-8967A>C||||||
1	101268	.	G	A	686.46	.	AC=47;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9028C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9028C>T||||||
1	101328	.	A	C	16.17	.	AC=4;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9088T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9088T>G||||||
1	101389	.	A	C	334.31	.	AC=30;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9149T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9149T>G||||||
1	101466	.	C	T	397.4	.	AC=29;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9226G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9226G>A||||||
1	101550	.	C	T	2111.04	.	AC=94;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9310G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9310G>A||||||
1	101668	.	C	T	562.56	.	AC=56;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9428G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9428G>A||||||
1	101686	.	A	G	8870.41	.	AC=171;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9446T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9446T>C||||||
1	101803	.	A	G	639.38	.	AC=41;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9563T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9563T>C||||||
1	101828	.	C	G	339.56	.	AC=26;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9588G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9588G>C||||||
1	101972	.	T	C	156.88	.	AC=14;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9732A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9732A>G||||||
1	101988	.	G	C	215.34	.	AC=20;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9748C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9748C>G||||||
1	102075	.	G	A	2586.32	.	AC=122;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9835C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9835C>T||||||
1	102138	.	C	T	966.23	.	AC=53;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-9898G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-9898G>A||||||
1	102264	.	T	G	1110.08	.	AC=68;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.264-10024A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.481-10024A>C||||||
1	102596	.	G	A	13494.27	.	AC=244;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+10104C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+10104C>T||||||
1	102664	.	A	G	7338.91	.	AC=163;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+10036T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+10036T>C||||||
1	102708	.	G	A	46.02	.	AC=7;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9992C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9992C>T||||||
1	102769	.	C	A	5481.41	.	AC=94;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9931G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9931G>T||||||
1	102941	.	G	T	107.05	.	AC=7;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9759C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9759C>A||||||
1	102951	.	C	T	7985.46	.	AC=114;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9749G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9749G>A||||||
1	102996	.	G	A	39.79	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9704C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9704C>T||||||
1	103026	.	G	C	141.71	.	AC=5;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9674C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9674C>G||||||
1	103058	.	C	T	1056.05	.	AC=57;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9642G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9642G>A||||||
1	103207	.	A	G	369.93	.	AC=27;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9493T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9493T>C||||||
1	103233	.	C	T	843.92	.	AC=73;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9467G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9467G>A||||||
1	103234	.	G	A	1139.16	.	AC=58;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9466C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9466C>T||||||
1	103241	.	C	T	1619.09	.	AC=86;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9459G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9459G>A||||||
1	103250	.	G	A	867.28	.	AC=58;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9450C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9450C>T||||||
1	103318	.	T	C	7060.45	.	AC=164;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9382A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9382A>G||||||
1	103385	.	G	A	2770.13	.	AC=118;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9315C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9315C>T||||||
1	103444	.	G	A	492.89	.	AC=32;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+9256C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+9256C>T||||||
1	103759	.	G	A	112.18	.	AC=11;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8941C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8941C>T||||||
1	103856	rs77787752	A	C	118.75	.	AC=15;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8844T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8844T>G||||||
1	103905	.	A	G	1914.07	.	AC=96;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8795T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8795T>C||||||
1	103983	.	C	T	52.1	.	AC=11;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8717G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8717G>A||||||
1	104033	rs4287120	T	C	1248.78	.	AC=94;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8667A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8667A>G||||||
1	104072	.	C	T	548.73	.	AC=49;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8628G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8628G>A||||||
1	104108	.	A	G	485.73	.	AC=52;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8592T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8592T>C||||||
1	104138	.	G	T	848.91	.	AC=54;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8562C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8562C>A||||||
1	104164	.	C	T	28.54	.	AC=3;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8536G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8536G>A||||||
1	104186	.	T	C	7629.83	.	AC=251;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8514A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8514A>G||||||
1	104194	.	C	A	221.69	.	AC=31;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8506G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8506G>T||||||
1	104281	.	T	C	373.51	.	AC=20;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8419A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8419A>G||||||
1	104390	.	A	G	38.69	.	AC=6;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8310T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8310T>C||||||
1	104449	.	C	A	258.26	.	AC=22;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8251G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8251G>T||||||
1	104555	.	A	G	898.21	.	AC=70;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8145T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8145T>C||||||
1	104614	.	A	C	137.71	.	AC=13;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+8086T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+8086T>G||||||
1	104828	.	C	T	120.88	.	AC=11;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+7872G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+7872G>A||||||
1	104841	.	G	A	106.18	.	AC=10;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+7859C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+7859C>T||||||
1	104935	.	G	A	46.77	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+7765C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+7765C>T||||||
1	104972	.	G	C	44.08	.	AC=9;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+7728C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+7728C>G||||||
1	105279	.	G	C	3894.11	.	AC=173;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+7421C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+7421C>G||||||
1	105329	.	C	T	160.34	.	AC=2;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+7371G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+7371G>A||||||
1	105890	.	G	A	28.16	.	AC=3;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+6810C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+6810C>T||||||
1	106027	.	T	A	697.29	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>T|||||4926|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+6673A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+6673A>T||||||
1	106324	.	A	C	67.66	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>G|||||4629|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+6376T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+6376T>G||||||
1	106534	.	A	G	407.89	.	AC=37;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>C|||||4419|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+6166T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+6166T>C||||||
1	106544	.	C	G	180.05	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>C|||||4409|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+6156G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+6156G>C||||||
1	106834	.	C	G	606.69	.	AC=21;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>C|||||4119|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5866G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5866G>C||||||
1	106847	.	C	T	121.62	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||4106|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5853G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5853G>A||||||
1	107258	.	C	T	142.97	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||3695|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5442G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5442G>A||||||
1	107260	.	G	A	1259.14	.	AC=58;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||3693|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5440C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5440C>T||||||
1	107286	.	C	T	163.6	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||3667|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5414G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5414G>A||||||
1	107363	.	C	A	59.97	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>T|||||3590|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5337G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5337G>T||||||
1	107530	.	A	T	58.31	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>A|||||3423|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5170T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5170T>A||||||
1	107621	.	C	G	46.18	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>C|||||3332|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+5079G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+5079G>C||||||
1	107970	.	G	A	118.24	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||2983|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4730C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4730C>T||||||
1	108230	.	C	T	1510.76	.	AC=67;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||2723|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4470G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4470G>A||||||
1	108242	.	T	C	18.03	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>G|||||2711|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4458A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4458A>G||||||
1	108297	.	A	C	398.91	.	AC=39;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>G|||||2656|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4403T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4403T>G||||||
1	108310	rs74747225	T	C	3144.04	.	AC=182;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>G|||||2643|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4390A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4390A>G||||||
1	108328	.	A	G	19.86	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>C|||||2625|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4372T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4372T>C||||||
1	108365	rs79073610	A	G	232.38	.	AC=33;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>C|||||2588|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4335T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4335T>C||||||
1	108366	.	C	T	43.03	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||2587|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4334G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4334G>A||||||
1	108375	.	G	A	83.96	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||2578|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4325C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4325C>T||||||
1	108391	.	A	G	24.59	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>C|||||2562|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4309T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4309T>C||||||
1	108413	.	T	G	1497.79	.	AC=106;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>C|||||2540|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4287A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4287A>C||||||
1	108540	.	A	C	1278.39	.	AC=80;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>G|||||2413|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4160T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4160T>G||||||
1	108675	.	G	A	68.62	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||2278|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+4025C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+4025C>T||||||
1	108757	.	A	G	152.89	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>C|||||2196|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3943T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3943T>C||||||
1	108775	.	C	T	739.47	.	AC=62;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||2178|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3925G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3925G>A||||||
1	108826	.	G	C	409.05	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>G|||||2127|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3874C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3874C>G||||||
1	108846	.	G	T	108.04	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>A|||||2107|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3854C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3854C>A||||||
1	108864	.	G	A	245.77	.	AC=22;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||2089|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3836C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3836C>T||||||
1	108869	.	G	T	61.07	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>A|||||2084|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3831C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3831C>A||||||
1	108893	.	C	T	2052.89	.	AC=101;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||2060|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3807G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3807G>A||||||
1	108929	.	C	G	17.53	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>C|||||2024|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3771G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3771G>C||||||
1	109001	.	T	A	392.8	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>T|||||1952|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3699A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3699A>T||||||
1	109150	.	A	G	39.78	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>C|||||1803|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3550T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3550T>C||||||
1	109176	.	C	T	364.45	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||1777|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3524G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3524G>A||||||
1	109182	.	C	T	78.13	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||1771|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3518G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3518G>A||||||
1	109309	.	G	A	184.87	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||1644|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3391C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3391C>T||||||
1	109373	.	G	T	28.28	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>A|||||1580|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3327C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3327C>A||||||
1	109425	.	G	A	6.33	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||1528|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3275C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3275C>T||||||
1	109457	.	G	A	137.36	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||1496|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3243C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3243C>T||||||
1	109481	.	G	A	293.95	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||1472|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3219C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3219C>T||||||
1	109488	.	G	A	12041.21	.	AC=255;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||1465|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3212C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3212C>T||||||
1	109503	.	G	A	128.1	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||1450|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3197C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3197C>T||||||
1	109561	.	T	A	18.27	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>T|||||1392|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3139A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3139A>T||||||
1	109576	.	G	A	821.55	.	AC=54;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||1377|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3124C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3124C>T||||||
1	109579	.	T	C	534.69	.	AC=37;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>G|||||1374|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3121A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3121A>G||||||
1	109604	.	G	T	465.92	.	AC=39;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>A|||||1349|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3096C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3096C>A||||||
1	109608	.	G	T	90.36	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>A|||||1345|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3092C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3092C>A||||||
1	109640	.	T	A	1136.15	.	AC=81;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>T|||||1313|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+3060A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+3060A>T||||||
1	109765	.	C	T	12.69	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||1188|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2935G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2935G>A||||||
1	109770	.	T	C	59.62	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>G|||||1183|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2930A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2930A>G||||||
1	109855	.	T	G	112.83	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>C|||||1098|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2845A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2845A>C||||||
1	109967	.	G	C	196.39	.	AC=15;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>G|||||986|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2733C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2733C>G||||||
1	110116	.	C	T	15.76	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||837|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2584G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2584G>A||||||
1	110254	.	T	C	158.22	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>G|||||699|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2446A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2446A>G||||||
1	110534	.	G	A	31.97	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||419|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2166C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2166C>T||||||
1	110545	.	A	G	20.18	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629T>C|||||408|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2155T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2155T>C||||||
1	110598	.	G	A	100.46	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629C>T|||||355|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+2102C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+2102C>T||||||
1	110703	.	C	T	31.53	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629G>A|||||250|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+1997G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+1997G>A||||||
1	110844	.	T	C	270.66	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.*629A>G|||||109|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+1856A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+1856A>G||||||
1	111371	.	A	G	971.25	.	AC=59;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+1329T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+1329T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.225-14T>C||||||
1	111550	.	A	G	60.45	.	AC=6;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+1150T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+1150T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.225-193T>C||||||
1	111828	.	G	A	471.86	.	AC=19;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+872C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+872C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.225-471C>T||||||
1	111831	.	G	T	5.94	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+869C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+869C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.225-474C>A||||||
1	111875	.	T	G	1359.48	.	AC=60;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+825A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+825A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.225-518A>C||||||
1	112243	.	G	A	90.68	.	AC=7;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+457C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+457C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.224+457C>T||||||
1	112256	.	G	A	64.88	.	AC=6;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+444C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+444C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.224+444C>T||||||
1	112326	.	A	C	64.71	.	AC=5;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|2/3|n.263+374T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|3/3|n.480+374T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|2/2|n.224+374T>G||||||
1	112934	.	T	C	50.09	.	AC=6;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-130A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-130A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-130A>G||||||
1	113384	.	A	T	25.1	.	AC=7;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-580T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-580T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-580T>A||||||
1	113566	.	A	G	28.85	.	AC=6;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-762T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-762T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-762T>C||||||
1	113682	.	A	G	307.05	.	AC=23;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-878T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-878T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-878T>C||||||
1	113886	.	C	T	45.02	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-1082G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-1082G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-1082G>A||||||
1	113890	.	T	C	48.24	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-1086A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-1086A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-1086A>G||||||
1	113895	.	T	C	81.01	.	AC=7;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-1091A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-1091A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-1091A>G||||||
1	113913	.	G	A	440.58	.	AC=22;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-1109C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-1109C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-1109C>T||||||
1	113969	.	C	T	6494.9	.	AC=115;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-1165G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-1165G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-1165G>A||||||
1	114671	.	T	C	37.41	.	AC=2;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-1867A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-1867A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-1867A>G||||||
1	114699	.	A	G	143.01	.	AC=4;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-1895T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-1895T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-1895T>C||||||
1	115474	.	A	G	1275.0	.	AC=49;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-2670T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-2670T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-2670T>C||||||
1	115746	.	C	T	1809.41	.	AC=41;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-2942G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-2942G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-2942G>A||||||
1	115929	.	G	A	152.94	.	AC=9;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-3125C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-3125C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-3125C>T||||||
1	115979	.	C	T	25.51	.	AC=2;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-3175G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-3175G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-3175G>A||||||
1	116037	.	T	G	60.88	.	AC=1;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-3233A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-3233A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-3233A>C||||||
1	116095	.	T	A	152.63	.	AC=8;ANN=A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-3291A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-3291A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-3291A>T||||||
1	116134	.	A	G	2610.43	.	AC=90;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-3330T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-3330T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-3330T>C||||||
1	116549	.	C	T	87.13	.	AC=7;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.159-3745G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.376-3745G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-3745G>A||||||
1	118318	.	A	G	224.31	.	AC=18;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+2457T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+2403T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-5514T>C||||||
1	118504	.	C	G	1492.52	.	AC=89;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+2271G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+2217G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-5700G>C||||||
1	118599	.	A	G	115.14	.	AC=5;ANN=G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+2176T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+2122T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-5795T>C||||||
1	118617	.	T	C	69080.4	.	AC=685;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+2158A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+2104A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-5813A>G||||||
1	118630	.	C	T	540.27	.	AC=20;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+2145G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+2091G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-5826G>A||||||
1	119539	.	T	C	40.96	.	AC=5;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+1236A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+1182A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-6735A>G||||||
1	120442	.	T	C	26.52	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+333A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+279A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-7638A>G||||||
1	120458	.	T	C	1174.28	.	AC=69;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+317A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+263A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-7654A>G||||||
1	120705	rs4117992	T	C	4876.61	.	AC=181;ANN=C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+70A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+16A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-7901A>G||||||
1	120717	.	G	A	31.26	.	AC=2;ANN=A|splice_region_variant&intron_variant|LOW|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/3|n.375+4C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+58C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-7913C>T||||||
1	120732	.	C	T	35.7	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA|1/3|n.158+43G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.120-7928G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|2/4|n.364G>A||||||
1	120983	.	C	T	3002.29	.	AC=110;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1G>A|||||51|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-51G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+8072G>A||||||
1	121009	rs1851943	C	T	7238.64	.	AC=186;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1G>A|||||77|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-77G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+8046G>A||||||
1	121077	rs58683621	G	C	165.17	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1C>G|||||145|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-145C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+7978C>G||||||
1	121191	rs71220897	C	A	208.77	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1G>T|||||259|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-259G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+7864G>T||||||
1	121552	.	C	T	36.1	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1G>A|||||620|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-620G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+7503G>A||||||
1	121770	.	A	G	34.79	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1T>C|||||838|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-838T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+7285T>C||||||
1	121937	.	T	G	26.72	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1A>C|||||1005|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-1005A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+7118A>C||||||
1	122445	.	T	G	47.52	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1A>C|||||1513|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-1513A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+6610A>C||||||
1	122745	.	G	T	17.25	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1C>A|||||1813|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-1813C>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+6310C>A||||||
1	122815	.	A	G	11569.2	.	AC=221;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1T>C|||||1883|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-1883T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+6240T>C||||||
1	122872	.	T	G	23237.78	.	AC=292;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1A>C|||||1940|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-1940A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+6183A>C||||||
1	123511	.	G	A	824.39	.	AC=50;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1C>T|||||2579|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-2579C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+5544C>T||||||
1	123642	.	T	G	2652.54	.	AC=133;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1A>C|||||2710|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-2710A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+5413A>C||||||
1	123730	.	G	A	288.61	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1C>T|||||2798|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-2798C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+5325C>T||||||
1	124021	.	T	A	265.4	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1A>T|||||3089|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-3089A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+5034A>T||||||
1	124056	.	G	A	7.14	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1C>T|||||3124|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-3124C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4999C>T||||||
1	124064	.	C	A	3158.16	.	AC=123;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1G>T|||||3132|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-3132G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4991G>T||||||
1	124470	.	A	C	453.36	.	AC=34;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1T>G|||||3538|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>G|||||4611|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-3538T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4585T>G||||||
1	124583	.	C	T	412.58	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1G>A|||||3651|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||4498|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-3651G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4472G>A||||||
1	124688	.	A	T	91.26	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1T>A|||||3756|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>A|||||4393|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-3756T>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4367T>A||||||
1	124800	.	T	C	130.68	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1A>G|||||3868|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336A>G|||||4281|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.164-3868A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4255A>G||||||
1	124994	.	T	C	80.82	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1A>G|||||4062|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336A>G|||||4087|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+4061A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4061A>G||||||
1	124998	.	A	C	205.36	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1T>G|||||4066|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>G|||||4083|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+4057T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+4057T>G||||||
1	125202	.	A	G	906.23	.	AC=52;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1T>C|||||4270|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>C|||||3879|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+3853T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+3853T>C||||||
1	125271	.	C	T	2344.54	.	AC=121;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1G>A|||||4339|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||3810|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+3784G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+3784G>A||||||
1	125415	.	G	A	59.1	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000466430|lincRNA||n.-1C>T|||||4483|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>T|||||3666|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+3640C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+3640C>T||||||
1	125976	.	C	T	525.3	.	AC=40;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||3105|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+3079G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+3079G>A||||||
1	126108	.	G	A	2438.16	.	AC=82;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||4917|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>T|||||2973|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2947C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2947C>T||||||
1	126113	rs79114531	C	A	53194.01	.	AC=825;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>A|||||4912|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>T|||||2968|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2942G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2942G>T||||||
1	126132	.	C	T	69.23	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>T|||||4893|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||2949|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2923G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2923G>A||||||
1	126268	.	G	C	227.89	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>C|||||4757|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>G|||||2813|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2787C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2787C>G||||||
1	126400	.	T	C	6.91	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>C|||||4625|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336A>G|||||2681|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2655A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2655A>G||||||
1	126545	.	C	T	11.6	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>T|||||4480|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||2536|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2510G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2510G>A||||||
1	126901	.	C	T	36.56	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>T|||||4124|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||2180|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2154G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2154G>A||||||
1	126904	.	A	G	16.19	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1A>G|||||4121|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>C|||||2177|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+2151T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+2151T>C||||||
1	127219	.	A	C	43.3	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1A>C|||||3806|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>G|||||1862|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+1836T>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+1836T>G||||||
1	127269	.	T	C	127.32	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>C|||||3756|,C|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336A>G|||||1812|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+1786A>G||||||,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+1786A>G||||||
1	127491	.	T	G	9586.66	.	AC=173;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>G|||||3534|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336A>C|||||1590|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+1564A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+1564A>C||||||
1	127573	.	G	A	21533.17	.	AC=358;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||3452|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>T|||||1508|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+1482C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+1482C>T||||||
1	127712	.	A	G	48.92	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1A>G|||||3313|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>C|||||1369|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+1343T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+1343T>C||||||
1	127972	.	G	A	138.54	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||3053|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>T|||||1109|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+1083C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+1083C>T||||||
1	127995	.	A	G	20.45	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1A>G|||||3030|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>C|||||1086|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+1060T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+1060T>C||||||
1	128203	.	T	G	24.61	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>G|||||2822|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336A>C|||||878|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+852A>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+852A>C||||||
1	128229	.	C	A	88.25	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>A|||||2796|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>T|||||852|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+826G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+826G>T||||||
1	128519	.	G	A	61.81	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||2506|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>T|||||562|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+536C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+536C>T||||||
1	128634	.	A	G	115.59	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1A>G|||||2391|,G|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336T>C|||||447|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+421T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+421T>C||||||
1	128658	.	G	A	28.56	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||2367|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>T|||||423|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+397C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+397C>T||||||
1	128713	.	G	A	41.64	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||2312|,A|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336C>T|||||368|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+342C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+342C>T||||||
1	128751	.	C	T	43.59	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>T|||||2274|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||330|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+304G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+304G>A||||||
1	128798	.	C	T	6535.92	.	AC=212;ANN=T|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>T|||||2227|,T|downstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.*336G>A|||||283|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/3|n.163+257G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/2|n.119+257G>A||||||
1	129151	.	T	G	631.92	.	AC=39;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>G|||||1874|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA|1/4|n.67A>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA|1/3|n.23A>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|2/2|n.266A>C||||||
1	129285	.	G	A	27233.64	.	AC=525;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||1740|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>T|||||68|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>T|||||112|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-62C>T||||||
1	129315	.	A	G	1721.67	.	AC=87;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1A>G|||||1710|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1T>C|||||98|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1T>C|||||142|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-92T>C||||||
1	129329	.	C	G	1997.04	.	AC=99;ANN=G|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>G|||||1696|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>C|||||112|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>C|||||156|,G|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-106G>C||||||
1	129543	.	C	T	278.74	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>T|||||1482|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>A|||||326|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>A|||||370|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-320G>A||||||
1	129625	.	T	C	913.85	.	AC=66;ANN=C|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>C|||||1400|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1A>G|||||408|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1A>G|||||452|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-402A>G||||||
1	129717	.	G	A	794.32	.	AC=70;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1G>A|||||1308|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>T|||||500|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>T|||||544|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-494C>T||||||
1	129727	.	C	A	105.47	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1C>A|||||1298|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>T|||||510|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>T|||||554|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-504G>T||||||
1	129963	.	T	A	813.57	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>A|||||1062|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1A>T|||||746|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1A>T|||||790|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850A>T|||||4938|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-740A>T||||||
1	130657	.	T	C	100.76	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.-1T>C|||||368|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1A>G|||||1440|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1A>G|||||1484|,C|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850A>G|||||4244|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755A>G|||||4484|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-1434A>G||||||
1	131130	.	G	A	18.99	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>T|||||1913|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>T|||||1957|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>T|||||3771|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||4011|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.194-1907C>T||||||,A|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.106G>A||||||
1	131315	.	T	C	165.6	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1A>G|||||2098|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1A>G|||||2142|,C|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850A>G|||||3586|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755A>G|||||3826|,C|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+2059A>G||||||,C|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.291T>C||||||
1	132138	.	C	T	70.74	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>A|||||2921|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>A|||||2965|,T|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850G>A|||||2763|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755G>A|||||3003|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+1236G>A||||||,T|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.1114C>T||||||
1	132757	.	C	T	88.66	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>A|||||3540|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>A|||||3584|,T|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850G>A|||||2144|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755G>A|||||2384|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||4925|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+617G>A||||||,T|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.1733C>T||||||
1	132782	.	G	A	2471.16	.	AC=110;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>T|||||3565|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>T|||||3609|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>T|||||2119|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||2359|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||4900|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+592C>T||||||,A|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.1758G>A||||||
1	133010	.	C	T	1736.41	.	AC=93;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>A|||||3793|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>A|||||3837|,T|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850G>A|||||1891|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755G>A|||||2131|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||4672|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+364G>A||||||,T|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.1986C>T||||||
1	133013	.	C	T	684.62	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>A|||||3796|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>A|||||3840|,T|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850G>A|||||1888|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755G>A|||||2128|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||4669|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+361G>A||||||,T|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.1989C>T||||||
1	133033	.	C	T	39.01	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1G>A|||||3816|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1G>A|||||3860|,T|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850G>A|||||1868|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755G>A|||||2108|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||4649|,T|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+341G>A||||||,T|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.2009C>T||||||
1	133129	.	G	A	4681.16	.	AC=197;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>T|||||3912|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>T|||||3956|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>T|||||1772|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||2012|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||4553|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+245C>T||||||,A|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.2105G>A||||||
1	133160	.	G	A	2598.36	.	AC=80;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>T|||||3943|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>T|||||3987|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>T|||||1741|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||1981|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||4522|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+214C>T||||||,A|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.2136G>A||||||
1	133268	.	G	A	19.91	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>T|||||4051|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>T|||||4095|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>T|||||1633|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||1873|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||4414|,A|intron_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/1|n.193+106C>T||||||,A|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.2244G>A||||||
1	133483	.	G	T	676.72	.	AC=46;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>A|||||4266|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>A|||||4310|,T|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>A|||||1418|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>A|||||1658|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>A|||||4199|,T|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.2459G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA|1/2|n.84C>A||||||
1	134133	.	G	C	525.21	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000477740|lincRNA||n.-1C>G|||||4916|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000471248|lincRNA||n.-1C>G|||||4960|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>G|||||567|,C|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>G|||||768|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>G|||||1008|,C|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>G|||||3549|,C|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.3109G>C||||||
1	134234	.	G	A	480.35	.	AC=45;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||668|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>T|||||667|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||907|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||3448|,A|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.3210G>A||||||
1	134775	.	G	A	28.6	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||1209|,A|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850C>T|||||126|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||366|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||2907|,A|non_coding_exon_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene|1/1|n.3751G>A||||||
1	134876	.	C	T	1456.23	.	AC=80;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||1310|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||40|,T|downstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.*850G>A|||||25|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755G>A|||||265|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||2806|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||4914|,T|intergenic_region|MODIFIER|CICP27-AL627309.1|ENSG00000233750-ENSG00000237683|intergenic_region|ENSG00000233750-ENSG00000237683|||||||||
1	135000	.	G	A	173.95	.	AC=18;ANN=A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1712C>T|||||3530|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||1434|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||164|,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||141|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||2682|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||4790|
1	135032	.	G	A	2750.25	.	AC=93;ANN=A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1680C>T|||||3498|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||1466|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||196|,A|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755C>T|||||109|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||2650|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||4758|
1	135040	.	T	C	685.49	.	AC=51;ANN=C|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1672A>G|||||3490|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1A>G|||||1474|,C|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812T>C|||||204|,C|downstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.*755A>G|||||101|,C|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284A>G|||||2642|,C|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323A>G|||||4750|
1	135162	.	G	A	13.36	.	AC=2;ANN=A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1550C>T|||||3368|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||1596|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||326|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||2520|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||4628|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene|1/1|n.734C>T||||||
1	135172	.	C	T	121.08	.	AC=21;ANN=T|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1540G>A|||||3358|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||1606|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||336|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||2510|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||4618|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene|1/1|n.724G>A||||||
1	135178	.	C	T	132.77	.	AC=22;ANN=T|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1534G>A|||||3352|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||1612|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||342|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||2504|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||4612|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene|1/1|n.718G>A||||||
1	135203	.	G	A	739.7	.	AC=28;ANN=A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1509C>T|||||3327|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||1637|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||367|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||2479|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||4587|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene|1/1|n.693C>T||||||
1	135465	.	C	T	349.58	.	AC=24;ANN=T|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*1247G>A|||||3065|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||1899|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||629|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||2217|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||4325|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene|1/1|n.431G>A||||||
1	135742	.	C	T	13.57	.	AC=3;ANN=T|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|2/2|c.*970G>A|||||2788|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||2176|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||906|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||1940|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||4048|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene|1/1|n.154G>A||||||
1	135982	.	A	G	1998.49	.	AC=125;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||87|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1T>C|||||2416|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812A>G|||||1146|,G|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284T>C|||||1700|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323T>C|||||3808|,G|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-180T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136048	.	C	T	11586.2	.	AC=275;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||153|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||2482|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||1212|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||1634|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||3742|,T|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-246G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136229	.	C	T	29.53	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||334|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||2663|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||1393|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||1453|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||3561|,T|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-427G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136312	.	C	G	106.28	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>C|||||417|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>C|||||2746|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>G|||||1476|,G|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>C|||||1370|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>C|||||3478|,G|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-510G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136409	.	C	G	66.28	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>C|||||514|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>C|||||2843|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>G|||||1573|,G|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>C|||||1273|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>C|||||3381|,G|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-607G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136437	.	T	C	1471.38	.	AC=96;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>G|||||542|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1A>G|||||2871|,C|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812T>C|||||1601|,C|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284A>G|||||1245|,C|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323A>G|||||3353|,C|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-635A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136456	.	A	G	380.42	.	AC=47;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||561|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1T>C|||||2890|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812A>G|||||1620|,G|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284T>C|||||1226|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323T>C|||||3334|,G|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-654T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136521	.	G	A	16.18	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||626|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||2955|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||1685|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||1161|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||3269|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||4953|,A|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-719C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136635	.	T	G	403.88	.	AC=35;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>C|||||740|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1A>C|||||3069|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812T>G|||||1799|,G|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284A>C|||||1047|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323A>C|||||3155|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860A>C|||||4839|,G|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-833A>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136652	.	A	G	508.71	.	AC=48;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||757|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1T>C|||||3086|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812A>G|||||1816|,G|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284T>C|||||1030|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323T>C|||||3138|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>C|||||4822|,G|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*910-850T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136718	.	C	T	9.72	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||823|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||3152|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||1882|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||964|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||3072|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||4756|,T|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+903G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136787	.	G	A	76.85	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||892|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||3221|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||1951|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||895|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||3003|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||4687|,A|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+834C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136817	.	T	C	308.08	.	AC=34;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>G|||||922|,C|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1A>G|||||3251|,C|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812T>C|||||1981|,C|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284A>G|||||865|,C|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323A>G|||||2973|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860A>G|||||4657|,C|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+804A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136827	.	C	T	262.7	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||932|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||3261|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||1991|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||855|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||2963|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||4647|,T|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+794G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136934	.	G	A	6000.77	.	AC=173;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||1039|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||3368|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||2098|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||748|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||2856|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||4540|,A|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+687C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136939	.	G	T	18.39	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>A|||||1044|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>A|||||3373|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>T|||||2103|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>A|||||743|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>A|||||2851|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||4535|,T|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+682C>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136940	.	G	T	124.9	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>A|||||1045|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>A|||||3374|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>T|||||2104|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>A|||||742|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>A|||||2850|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||4534|,T|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+681C>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	136962	.	C	T	1282.85	.	AC=89;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||1067|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||3396|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||2126|,T|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284G>A|||||720|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||2828|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||4512|,T|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+659G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	137109	.	G	A	129.0	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||1214|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||3543|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||2273|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||573|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||2681|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||4365|,A|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+512C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	137178	.	G	A	27.27	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||1283|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||3612|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||2342|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||504|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||2612|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||4296|,A|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+443C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	137578	.	G	A	21.57	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||1683|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||4012|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||2742|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||104|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||2212|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||3896|,A|intron_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/1|c.*909+43C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	137622	.	G	A	276.66	.	AC=30;ANN=A|splice_region_variant|LOW|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*908C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*908C>T|||||908|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||1727|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||4056|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||2786|,A|downstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.*284C>T|||||60|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||2168|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||3852|
1	137801	.	G	A	139.96	.	AC=3;ANN=A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*729C>T|||||729|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||1906|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||4235|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||2965|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||1989|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||3673|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene|1/1|n.165C>T||||||
1	137825	.	G	A	8469.11	.	AC=205;ANN=A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*705C>T|||||705|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||1930|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||4259|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||2989|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||1965|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||3649|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||4983|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene|1/1|n.141C>T||||||
1	137923	.	C	T	49.35	.	AC=10;ANN=T|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*607G>A|||||607|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||2028|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1G>A|||||4357|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||3087|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||1867|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||3551|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>A|||||4885|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene|1/1|n.43G>A||||||
1	138156	.	G	T	957.87	.	AC=64;ANN=T|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*374C>A|||||374|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>A|||||2261|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>A|||||191|,T|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>A|||||4590|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>T|||||3320|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>A|||||1634|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||3318|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>A|||||4652|
1	138355	.	A	G	23.14	.	AC=3;ANN=G|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*175T>C|||||175|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||2460|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1T>C|||||390|,G|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1T>C|||||4789|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812A>G|||||3519|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323T>C|||||1435|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>C|||||3119|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518T>C|||||4453|
1	138405	.	G	A	23.75	.	AC=2;ANN=A|3_prime_UTR_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.*125C>T|||||125|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||2510|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||440|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||4839|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||3569|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||1385|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||3069|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||4403|
1	138565	.	G	A	62.16	.	AC=4;ANN=A|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.745C>T|p.Leu249Phe|815/2661|745/780|249/259||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||2670|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||600|,A|upstream_gene_variant|MODIFIER|RP11-34P13.7|ENSG00000238009|transcript|ENST00000453576|lincRNA||n.-1C>T|||||4999|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||3729|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||1225|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||2909|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||4243|
1	138593	.	G	T	476.56	.	AC=45;ANN=T|synonymous_variant|LOW|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.717C>A|p.Ala239Ala|787/2661|717/780|239/259||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>A|||||2698|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>A|||||628|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>T|||||3757|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>A|||||1197|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||2881|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>A|||||4215|
1	138733	.	G	A	158.67	.	AC=14;ANN=A|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.577C>T|p.Leu193Phe|647/2661|577/780|193/259||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||2838|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||768|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||3897|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||1057|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||2741|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||4075|
1	138781	.	C	T	22.05	.	AC=1;ANN=T|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.529G>A|p.Gly177Ser|599/2661|529/780|177/259||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||2886|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>A|||||816|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||3945|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||1009|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||2693|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>A|||||4027|
1	138825	.	G	A	43.86	.	AC=1;ANN=A|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.485C>T|p.Pro162Leu|555/2661|485/780|162/259||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||2930|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||860|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||3989|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||965|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||2649|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||3983|
1	138829	.	G	T	41.33	.	AC=1;ANN=T|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.481C>A|p.Leu161Met|551/2661|481/780|161/259||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>A|||||2934|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>A|||||864|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>T|||||3993|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>A|||||961|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||2645|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>A|||||3979|
1	138980	.	G	T	65.05	.	AC=8;ANN=T|synonymous_variant|LOW|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.330C>A|p.Ser110Ser|400/2661|330/780|110/259||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>A|||||3085|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>A|||||1015|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>T|||||4144|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>A|||||810|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||2494|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>A|||||3828|
1	139015	.	G	A	45.44	.	AC=1;ANN=A|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.295C>T|p.Leu99Phe|365/2661|295/780|99/259||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||3120|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||1050|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||4179|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||775|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||2459|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||3793|
1	139029	.	C	T	99.79	.	AC=2;ANN=T|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.281G>A|p.Arg94Gln|351/2661|281/780|94/259||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||3134|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>A|||||1064|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||4193|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||761|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||2445|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>A|||||3779|
1	139060	.	G	A	23.86	.	AC=1;ANN=A|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.250C>T|p.Arg84Trp|320/2661|250/780|84/259||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||3165|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||1095|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||4224|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||730|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||2414|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||3748|
1	139213	.	A	G	666.62	.	AC=47;ANN=G|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.97T>C|p.Cys33Arg|167/2661|97/780|33/259||WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||3318|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1T>C|||||1248|,G|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812A>G|||||4377|,G|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323T>C|||||577|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>C|||||2261|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518T>C|||||3595|
1	139233	.	C	A	1309.66	.	AC=78;ANN=A|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.77G>T|p.Gly26Val|147/2661|77/780|26/259||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>T|||||3338|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>T|||||1268|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>A|||||4397|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>T|||||557|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>T|||||2241|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>T|||||3575|
1	139294	.	G	A	40.25	.	AC=1;ANN=A|missense_variant|MODERATE|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding|1/2|c.16C>T|p.Pro6Ser|86/2661|16/780|6/259||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||3399|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||1329|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||4458|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||496|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||2180|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||3514|
1	139393	.	G	T	62.99	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>A|||||14|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>A|||||3498|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>A|||||1428|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>T|||||4557|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>A|||||397|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||2081|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>A|||||3415|,T|intergenic_region|MODIFIER|AL627309.1-RP11-34P13.14|ENSG00000237683-ENSG00000239906|intergenic_region|ENSG00000237683-ENSG00000239906|||||||||
1	139456	.	G	C	138.12	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>G|||||77|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>G|||||3561|,C|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>G|||||1491|,C|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>C|||||4620|,C|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>G|||||334|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>G|||||2018|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>G|||||3352|,C|intergenic_region|MODIFIER|AL627309.1-RP11-34P13.14|ENSG00000237683-ENSG00000239906|intergenic_region|ENSG00000237683-ENSG00000239906|||||||||
1	139457	.	G	A	23.92	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>T|||||78|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||3562|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||1492|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||4621|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||333|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||2017|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||3351|,A|intergenic_region|MODIFIER|AL627309.1-RP11-34P13.14|ENSG00000237683-ENSG00000239906|intergenic_region|ENSG00000237683-ENSG00000239906|||||||||
1	139479	.	C	T	65.01	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>A|||||100|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>A|||||3584|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>A|||||1514|,T|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812C>T|||||4643|,T|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323G>A|||||311|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||1995|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>A|||||3329|,T|intergenic_region|MODIFIER|AL627309.1-RP11-34P13.14|ENSG00000237683-ENSG00000239906|intergenic_region|ENSG00000237683-ENSG00000239906|||||||||
1	139781	.	G	A	416.23	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>T|||||402|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||3886|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||1816|,A|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>A|||||4945|,A|downstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.*323C>T|||||9|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||1693|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||3027|,A|intergenic_region|MODIFIER|AL627309.1-RP11-34P13.14|ENSG00000237683-ENSG00000239906|intergenic_region|ENSG00000237683-ENSG00000239906|||||||||
1	139836	.	G	C	856.24	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>G|||||457|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>G|||||3941|,C|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>G|||||1871|,C|downstream_gene_variant|MODIFIER|CICP27|ENSG00000233750|transcript|ENST00000442987|processed_pseudogene||n.*3812G>C|||||5000|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>G|||||1638|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>G|||||2972|,C|non_coding_exon_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense|2/2|n.277C>G||||||
1	139841	rs62642133	T	G	420.27	.	AC=35;ANN=G|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71A>C|||||462|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>C|||||3946|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1A>C|||||1876|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860A>C|||||1633|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518A>C|||||2967|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense|2/2|n.272A>C||||||
1	139847	.	C	G	394.86	.	AC=25;ANN=G|splice_region_variant&non_coding_exon_variant|LOW|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense|2/2|n.266G>C||||||,G|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>C|||||468|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>C|||||3952|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>C|||||1882|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>C|||||1627|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>C|||||2961|
1	139869	.	A	G	51.96	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71T>C|||||490|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||3974|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1T>C|||||1904|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>C|||||1605|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518T>C|||||2939|,G|intron_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense|1/1|n.266-22T>C||||||
1	139947	.	G	A	1443.64	.	AC=95;ANN=A|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>T|||||568|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||4052|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||1982|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||1527|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||2861|,A|intron_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense|1/1|n.266-100C>T||||||
1	139967	.	T	C	466.77	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71A>G|||||588|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>G|||||4072|,C|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1A>G|||||2002|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860A>G|||||1507|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518A>G|||||2841|,C|intron_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense|1/1|n.265+108A>G||||||
1	140144	.	A	G	189.94	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71T>C|||||765|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||4249|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1T>C|||||2179|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>C|||||1330|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518T>C|||||2664|,G|non_coding_exon_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense|1/2|n.196T>C||||||
1	140360	.	T	G	10.67	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71A>C|||||981|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>C|||||4465|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1A>C|||||2395|,G|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1A>C|||||21|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860A>C|||||1114|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518A>C|||||2448|,G|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140369	.	T	C	300.9	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71A>G|||||990|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>G|||||4474|,C|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1A>G|||||2404|,C|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1A>G|||||30|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860A>G|||||1105|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518A>G|||||2439|,C|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140431	.	A	T	198.09	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71T>A|||||1052|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>A|||||4536|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1T>A|||||2466|,T|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1T>A|||||92|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>A|||||1043|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518T>A|||||2377|,T|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140515	.	C	G	18.18	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>C|||||1136|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1G>C|||||4620|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>C|||||2550|,G|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1G>C|||||176|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>C|||||959|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>C|||||2293|,G|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140529	.	T	C	37.12	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71A>G|||||1150|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1A>G|||||4634|,C|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1A>G|||||2564|,C|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1A>G|||||190|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860A>G|||||945|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518A>G|||||2279|,C|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140641	.	G	A	398.0	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>T|||||1262|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1C>T|||||4746|,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>T|||||2676|,A|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1C>T|||||302|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>T|||||833|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>T|||||2167|,A|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140755	.	A	G	391.74	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71T>C|||||1376|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>C|||||4860|,G|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1T>C|||||2790|,G|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1T>C|||||416|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>C|||||719|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518T>C|||||2053|,G|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140854	.	A	T	241.34	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71T>A|||||1475|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.15|ENSG00000268903|transcript|ENST00000494149|processed_pseudogene||n.-1T>A|||||4959|,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1T>A|||||2889|,T|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1T>A|||||515|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860T>A|||||620|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518T>A|||||1954|,T|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	140956	.	C	T	414.82	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>A|||||1577|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>A|||||2991|,T|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1G>A|||||617|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||518|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>A|||||1852|,T|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	141032	.	C	A	275.44	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>T|||||1653|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>T|||||3067|,A|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1G>T|||||693|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>T|||||442|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>T|||||1776|,A|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	141263	.	C	T	61.36	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>A|||||1884|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>A|||||3298|,T|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1G>A|||||924|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860G>A|||||211|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>A|||||1545|,T|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	141279	.	G	T	82.18	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71C>A|||||1900|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1C>A|||||3314|,T|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1C>A|||||940|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.*4860C>A|||||195|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518C>A|||||1529|,T|intergenic_region|MODIFIER|RP11-34P13.14-RP11-34P13.13|ENSG00000239906-ENSG00000241860|intergenic_region|ENSG00000239906-ENSG00000241860|||||||||
1	142721	.	C	T	16.18	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>A|||||3342|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.16|ENSG00000269981|transcript|ENST00000595919|processed_pseudogene||n.-1G>A|||||4756|,T|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1G>A|||||2382|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.*518G>A|||||87|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301G>A|||||3665|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|2/2|n.3613G>A||||||
1	143800	.	C	T	36.63	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AL627309.1|ENSG00000237683|transcript|ENST00000423372|protein_coding||c.-71G>A|||||4421|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1G>A|||||3461|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301G>A|||||2586|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/1|n.3323-789G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|2/2|n.315-789G>A||||||
1	144527	.	G	A	18.52	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1C>T|||||4188|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301C>T|||||1859|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/1|n.3323-1516C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|2/2|n.315-1516C>T||||||
1	144828	.	G	A	24.69	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.14|ENSG00000239906|transcript|ENST00000493797|antisense||n.-1C>T|||||4489|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301C>T|||||1558|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/1|n.3322+1558C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|2/2|n.314+1558C>T||||||
1	145455	.	C	T	9.17	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301G>A|||||931|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/1|n.3322+931G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|2/2|n.314+931G>A||||||
1	145716	.	C	T	11.81	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301G>A|||||670|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/1|n.3322+670G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|2/2|n.314+670G>A||||||
1	146199	.	G	A	33.81	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301C>T|||||187|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/1|n.3322+187C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|2/2|n.314+187C>T||||||
1	146260	.	A	G	18.79	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.*1301T>C|||||126|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/1|n.3322+126T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|2/2|n.314+126T>C||||||
1	146624	.	A	G	18.3	.	AC=3;ANN=G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|1/2|n.190+18T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-115T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.3084T>C||||||
1	146627	.	G	A	16.55	.	AC=2;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense|1/2|n.190+15C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-118C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.3081C>T||||||
1	146894	.	C	T	121.25	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1G>A|||||63|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-385G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.2814G>A||||||
1	147337	.	C	T	110.35	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1G>A|||||506|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-828G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.2371G>A||||||
1	147750	.	C	A	117.3	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1G>T|||||919|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-1241G>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.1958G>T||||||
1	148616	.	G	A	14.28	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>T|||||1785|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-2107C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.1092C>T||||||
1	148928	.	G	C	178.25	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>G|||||2097|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-2419C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.780C>G||||||
1	149172	.	A	G	24.26	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1T>C|||||2341|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-2663T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.536T>C||||||
1	149194	.	G	C	35.97	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>G|||||2363|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-2685C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.514C>G||||||
1	149685	.	A	G	40.95	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1T>C|||||2854|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3176T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense|1/2|n.23T>C||||||
1	149767	.	C	A	24.33	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1G>T|||||60|,A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1G>T|||||2936|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3258G>T||||||
1	149837	.	G	C	156.17	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>G|||||130|,C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>G|||||3006|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3328C>G||||||
1	149955	.	G	A	120.04	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>T|||||248|,A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>T|||||3124|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3446C>T||||||
1	150049	.	T	C	15.05	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1A>G|||||342|,C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1A>G|||||3218|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3540A>G||||||
1	150056	rs4081358	G	A	67.7	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>T|||||349|,A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>T|||||3225|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3547C>T||||||
1	150059	rs4081359	G	A	106.37	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>T|||||352|,A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>T|||||3228|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3550C>T||||||
1	150302	.	T	C	51.97	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1A>G|||||595|,C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1A>G|||||3471|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3793A>G||||||
1	150331	.	G	A	41.85	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>T|||||624|,A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1C>T|||||3500|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3822C>T||||||
1	150462	.	A	C	2726.09	.	AC=139;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1T>G|||||755|,C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1T>G|||||3631|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1178-3953T>G||||||
1	151243	.	C	T	29.29	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1G>A|||||1536|,T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000490997|antisense||n.-1G>A|||||4412|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+4524G>A||||||
1	152587	.	G	C	221.69	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>G|||||2880|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+3180C>G||||||
1	152779	.	C	T	36.42	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1G>A|||||3072|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+2988G>A||||||
1	152892	.	T	C	728.52	.	AC=33;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1A>G|||||3185|,C|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104A>G|||||4892|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+2875A>G||||||
1	153670	.	A	G	64.63	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1T>C|||||3963|,G|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104T>C|||||4114|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+2097T>C||||||
1	154125	.	T	A	186.61	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1A>T|||||4418|,A|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104A>T|||||3659|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+1642A>T||||||
1	154227	.	A	G	23.52	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1T>C|||||4520|,G|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104T>C|||||3557|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+1540T>C||||||
1	154275	.	G	C	908.88	.	AC=47;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>G|||||4568|,C|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104C>G|||||3509|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+1492C>G||||||
1	154328	.	G	T	6.4	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000484859|antisense||n.-1C>A|||||4621|,T|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104C>A|||||3456|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+1439C>A||||||
1	154953	.	C	T	4.87	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104G>A|||||2831|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/7|n.1177+814G>A||||||
1	155800	.	C	T	42.47	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1C>T|||||4646|,T|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104G>A|||||1984|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|7/8|n.1144G>A||||||
1	156035	.	A	G	6.05	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1A>G|||||4411|,G|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104T>C|||||1749|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-204T>C||||||
1	157259	.	G	A	1984.54	.	AC=92;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1G>A|||||3187|,A|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104C>T|||||525|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-1428C>T||||||
1	157638	.	C	T	58.83	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1C>T|||||2808|,T|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104G>A|||||146|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-1807G>A||||||
1	157689	.	G	C	64.21	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1G>C|||||2757|,C|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104C>G|||||95|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-1858C>G||||||
1	157746	.	A	C	130.71	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1A>C|||||2700|,C|downstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.*104T>G|||||38|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-1915T>G||||||
1	157823	.	T	C	27.3	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1T>C|||||2623|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-1992A>G||||||,C|non_coding_exon_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA|1/1|n.65A>G||||||
1	158006	.	A	T	7484.69	.	AC=189;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>A|||||119|,T|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1A>T|||||2440|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-2175T>A||||||
1	158090	.	G	A	17.92	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1C>T|||||203|,A|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1G>A|||||2356|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-2259C>T||||||
1	158170	.	C	T	232.34	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1G>A|||||283|,T|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1C>T|||||2276|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-2339G>A||||||
1	158364	.	G	T	25.82	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1C>A|||||477|,T|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1G>T|||||2082|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-2533C>A||||||
1	158607	.	T	G	36.84	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>C|||||720|,G|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1T>G|||||1839|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-2776A>C||||||
1	158976	.	C	A	29.02	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1G>T|||||1089|,A|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1C>A|||||1470|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3145G>T||||||
1	158989	.	T	A	84.77	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>T|||||1102|,A|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1T>A|||||1457|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3158A>T||||||
1	159007	.	A	C	32.17	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>G|||||1120|,C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1A>C|||||1439|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3176T>G||||||
1	159030	.	A	C	117.51	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>G|||||1143|,C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1A>C|||||1416|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3199T>G||||||
1	159043	.	C	G	24.08	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1G>C|||||1156|,G|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1C>G|||||1403|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3212G>C||||||
1	159465	.	G	A	5.08	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1C>T|||||1578|,A|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1G>A|||||981|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3634C>T||||||
1	159568	.	G	A	45.35	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1C>T|||||1681|,A|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1G>A|||||878|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3737C>T||||||
1	159671	.	T	C	49.29	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>G|||||1784|,C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1T>C|||||775|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3840A>G||||||
1	159799	.	C	T	84.98	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1G>A|||||1912|,T|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1C>T|||||647|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-3968G>A||||||
1	159960	.	T	C	230.48	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>G|||||2073|,C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1T>C|||||486|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-4129A>G||||||
1	160009	.	T	C	76.49	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>G|||||2122|,C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1T>C|||||437|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1113-4178A>G||||||
1	160207	.	A	G	293.56	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>C|||||2320|,G|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1A>G|||||239|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+4056T>C||||||
1	160297	.	A	C	125.53	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>G|||||2410|,C|upstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.-1A>C|||||149|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+3966T>G||||||
1	160573	.	C	G	280.98	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1G>C|||||2686|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+3690G>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA|1/2|n.128C>G||||||
1	161286	.	G	A	80.86	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1C>T|||||3399|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278C>T|||||4603|,A|intron_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA|1/1|n.246-28G>A||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+2977C>T||||||
1	161406	.	T	C	58.23	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>G|||||3519|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278A>G|||||4483|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+2857A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA|2/2|n.338T>C||||||
1	161437	.	A	G	269.75	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>C|||||3550|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>C|||||4452|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+2826T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA|2/2|n.369A>G||||||
1	161483	.	C	G	220.9	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1G>C|||||3596|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278G>C|||||4406|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+2780G>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA|2/2|n.415C>G||||||
1	161488	.	C	T	87.56	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1G>A|||||3601|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278G>A|||||4401|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+2775G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA|2/2|n.420C>T||||||
1	161613	.	A	G	227.69	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>C|||||3726|,G|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457A>G|||||88|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>C|||||4276|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+2650T>C||||||
1	162016	.	A	G	32.46	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1T>C|||||4129|,G|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457A>G|||||491|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>C|||||3873|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+2247T>C||||||
1	162463	.	T	C	6401.45	.	AC=113;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>G|||||4576|,C|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457T>C|||||938|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278A>G|||||3426|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+1800A>G||||||
1	162482	.	T	C	320.96	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1100P|ENSG00000222623|transcript|ENST00000410691|snRNA||n.-1A>G|||||4595|,C|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457T>C|||||957|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278A>G|||||3407|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+1781A>G||||||
1	162986	.	C	T	96.64	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457C>T|||||1461|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278G>A|||||2903|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+1277G>A||||||
1	163410	.	G	A	96.85	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457G>A|||||1885|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278C>T|||||2479|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+853C>T||||||
1	163521	.	C	A	231.35	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457C>A|||||1996|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278G>T|||||2368|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+742G>T||||||
1	163656	.	T	C	43.49	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457T>C|||||2131|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278A>G|||||2233|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+607A>G||||||
1	163809	.	A	C	128.79	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457A>C|||||2284|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>G|||||2080|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+454T>G||||||
1	164138	.	A	G	286.36	.	AC=23;ANN=G|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457A>G|||||2613|,G|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>C|||||1751|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+125T>C||||||
1	164154	.	T	C	369.7	.	AC=28;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457T>C|||||2629|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278A>G|||||1735|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+109A>G||||||
1	164211	.	A	C	122.34	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457A>C|||||2686|,C|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>G|||||1678|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/7|n.1112+52T>G||||||
1	164467	.	C	T	48.03	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457C>T|||||2942|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278G>A|||||1422|,T|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|6/8|n.908G>A||||||
1	165163	.	G	T	130.37	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457G>T|||||3638|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278C>A|||||726|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|5/7|n.584-372C>A||||||
1	165195	.	G	T	41.99	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457G>T|||||3670|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278C>A|||||694|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|5/7|n.584-404C>A||||||
1	165412	.	G	A	493.22	.	AC=26;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457G>A|||||3887|,A|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278C>T|||||477|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|5/7|n.583+472C>T||||||
1	165452	.	A	T	21.1	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457A>T|||||3927|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>A|||||437|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|5/7|n.583+432T>A||||||
1	165474	.	A	T	157.27	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457A>T|||||3949|,T|downstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.*278T>A|||||415|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|5/7|n.583+410T>A||||||
1	166051	.	G	A	300.46	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|RP11-34P13.9|ENSG00000241599|transcript|ENST00000496488|lincRNA||n.*457G>A|||||4526|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.525-109C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.225-109C>T||||||
1	166650	.	G	C	42.29	.	AC=3;ANN=C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.525-708C>G||||||,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.225-708C>G||||||
1	166990	.	C	T	108.95	.	AC=8;ANN=T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.525-1048G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.225-1048G>A||||||
1	166997	.	T	A	84.32	.	AC=8;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.525-1055A>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.225-1055A>T||||||
1	167428	.	G	A	106.63	.	AC=6;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.524+672C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.224+672C>T||||||
1	167517	.	C	A	32.57	.	AC=3;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.524+583G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.224+583G>T||||||
1	167884	.	A	G	6.54	.	AC=1;ANN=G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.524+216T>C||||||,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.224+216T>C||||||
1	167967	.	G	A	1158.46	.	AC=96;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.524+133C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.224+133C>T||||||
1	167976	.	G	A	1133.85	.	AC=45;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.524+124C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.224+124C>T||||||
1	168018	.	G	A	315.01	.	AC=19;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/7|n.524+82C>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/2|n.224+82C>T||||||
1	168148	.	T	A	117.8	.	AC=12;ANN=A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|4/8|n.476A>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|2/3|n.176A>T||||||
1	168200	.	C	G	365.6	.	AC=22;ANN=G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|3/7|n.459-35G>C||||||,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|1/2|n.159-35G>C||||||
1	168373	.	C	T	213.71	.	AC=18;ANN=T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|3/7|n.459-208G>A||||||,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|1/2|n.159-208G>A||||||
1	168415	.	C	A	136.83	.	AC=11;ANN=A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|3/7|n.459-250G>T||||||,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA|1/2|n.158+195G>T||||||
1	168870	.	C	T	50.35	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1G>A|||||103|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|3/7|n.458+179G>A||||||
1	168964	.	A	G	241.74	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1T>C|||||197|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|3/7|n.458+85T>C||||||
1	169059	.	G	A	23.88	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||292|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|3/8|n.448C>T||||||
1	169110	.	G	A	37.95	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||343|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|3/8|n.397C>T||||||
1	169305	.	G	T	267.61	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>A|||||538|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.243-41C>A||||||
1	169851	.	G	T	19.86	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>A|||||1084|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.243-587C>A||||||
1	170071	.	G	A	54.02	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||1304|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.243-807C>T||||||
1	170499	.	G	C	24.19	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>G|||||1732|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.243-1235C>G||||||
1	170730	.	C	G	13.29	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1G>C|||||1963|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.243-1466G>C||||||
1	171239	.	G	A	423.51	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||2472|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.242+1318C>T||||||
1	171529	.	A	G	38.48	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1T>C|||||2762|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.242+1028T>C||||||
1	171841	.	A	G	34.48	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1T>C|||||3074|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.242+716T>C||||||
1	172021	.	G	A	12.77	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||3254|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.242+536C>T||||||
1	172336	.	G	A	21.33	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||3569|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/7|n.242+221C>T||||||
1	172595	.	G	A	903.54	.	AC=46;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||3828|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/8|n.204C>T||||||
1	172635	.	G	A	179.67	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||3868|,A|non_coding_exon_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|2/8|n.164C>T||||||
1	172708	.	T	A	70.45	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1A>T|||||3941|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.111-20A>T||||||
1	172872	.	G	A	11.21	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1C>T|||||4105|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.111-184C>T||||||
1	172899	.	C	T	66.06	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1G>A|||||4132|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.111-211G>A||||||
1	173052	.	C	A	993.71	.	AC=64;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1G>T|||||4285|,A|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.111-364G>T||||||
1	173098	.	C	T	6052.51	.	AC=218;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1G>A|||||4331|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.111-410G>A||||||
1	173173	.	A	G	577.23	.	AC=33;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1T>C|||||4406|,G|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.111-485T>C||||||
1	173417	.	C	T	150.25	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1G>A|||||4650|,T|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.110+336G>A||||||
1	173709	.	A	C	909.86	.	AC=50;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000491962|lincRNA||n.-1T>G|||||4942|,C|intron_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA|1/7|n.110+44T>G||||||
1	174217	.	G	A	133.86	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.-1C>T|||||355|,A|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	174373	.	A	C	183.62	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.-1T>G|||||511|,C|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	174401	.	T	C	52.39	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.-1A>G|||||539|,C|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	174760	.	T	C	22.06	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.-1A>G|||||898|,C|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	174864	.	T	C	232.92	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.-1A>G|||||1002|,C|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	175001	.	A	G	225.67	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.-1T>C|||||1139|,G|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	176932	.	G	A	7.1	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-34P13.13|ENSG00000241860|transcript|ENST00000466557|lincRNA||n.-1C>T|||||3070|,A|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	227542	.	A	G	28.01	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457T>C|||||777|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.*1292T>C|||||73|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925T>C|||||353|,G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363T>C|||||750|,G|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	227554	.	T	C	236.37	.	AC=29;ANN=C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457A>G|||||765|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.*1292A>G|||||61|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925A>G|||||341|,C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363A>G|||||738|,C|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	227572	.	G	A	74.29	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457C>T|||||747|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.*1292C>T|||||43|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925C>T|||||323|,A|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363C>T|||||720|,A|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	227577	.	A	C	52.01	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457T>G|||||742|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.*1292T>G|||||38|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925T>G|||||318|,C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363T>G|||||715|,C|intergenic_region|MODIFIER|RP11-34P13.13-AP006222.2|ENSG00000241860-ENSG00000228463|intergenic_region|ENSG00000241860-ENSG00000228463|||||||||
1	227622	.	C	T	250.98	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457G>A|||||697|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925G>A|||||273|,T|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363G>A|||||670|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.1285G>A||||||
1	227635	.	A	G	219.12	.	AC=20;ANN=G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457T>C|||||684|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925T>C|||||260|,G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363T>C|||||657|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.1272T>C||||||
1	227644	.	T	C	559.79	.	AC=35;ANN=C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457A>G|||||675|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925A>G|||||251|,C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363A>G|||||648|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.1263A>G||||||
1	227647	.	T	C	26.06	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457A>G|||||672|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925A>G|||||248|,C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363A>G|||||645|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.1260A>G||||||
1	227653	.	A	G	34.21	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457T>C|||||666|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925T>C|||||242|,G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363T>C|||||639|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.1254T>C||||||
1	227745	.	C	G	43.05	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457G>C|||||574|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925G>C|||||150|,G|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363G>C|||||547|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.1162G>C||||||
1	227844	.	G	A	8.53	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457C>T|||||475|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.*1925C>T|||||51|,A|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363C>T|||||448|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.1063C>T||||||
1	227919	.	A	T	1054.33	.	AC=64;ANN=T|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457T>A|||||400|,T|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363T>A|||||373|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.988T>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|3/3|n.1901T>A||||||
1	228166	.	T	C	11.98	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457A>G|||||153|,C|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.*363A>G|||||126|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.741A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|3/3|n.1654A>G||||||
1	228315	.	G	A	38.58	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.*457C>T|||||4|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.592C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|3/3|n.1505C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene|1/1|n.340C>T||||||
1	228586	.	G	A	49.11	.	AC=7;ANN=A|non_coding_exon_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene|1/1|n.190C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|2/2|n.321C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|3/3|n.1234C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene|1/1|n.69C>T||||||
1	228817	.	T	C	964.54	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||42|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||163|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-41A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-41A>G||||||
1	228853	.	C	T	432.19	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||78|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||199|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-77G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-77G>A||||||
1	229026	.	G	A	73.69	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||251|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||372|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-250C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-250C>T||||||
1	229074	.	A	G	37.66	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||299|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||420|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-298T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-298T>C||||||
1	229109	.	T	C	70.65	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||334|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||455|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-333A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-333A>G||||||
1	229161	.	C	T	529.73	.	AC=39;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||386|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||507|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-385G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-385G>A||||||
1	229477	.	C	T	1763.41	.	AC=87;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||702|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||823|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-701G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-701G>A||||||
1	229615	.	T	C	12.48	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||840|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||961|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-839A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-839A>G||||||
1	229625	.	G	A	25.58	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||850|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||971|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-849C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-849C>T||||||
1	229673	.	A	C	7374.55	.	AC=295;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>G|||||898|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>G|||||1019|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-897T>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-897T>G||||||
1	229738	.	G	A	213.7	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||963|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||1084|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-962C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-962C>T||||||
1	229868	rs111293595	C	T	416.13	.	AC=34;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||1093|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||1214|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1092G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1092G>A||||||
1	229902	rs62642953	G	T	267.93	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>A|||||1127|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>A|||||1248|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1126C>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1126C>A||||||
1	229913	.	G	T	215.21	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>A|||||1138|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>A|||||1259|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1137C>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1137C>A||||||
1	229991	.	C	G	26.83	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>C|||||1216|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>C|||||1337|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1215G>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1215G>C||||||
1	230058	rs62635260	T	G	2710.23	.	AC=162;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>C|||||1283|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>C|||||1404|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1282A>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1282A>C||||||
1	230105	.	G	C	21.3	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>G|||||1330|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>G|||||1451|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1329C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1329C>G||||||
1	230233	.	T	C	148.21	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||1458|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||1579|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1457A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1457A>G||||||
1	230279	.	A	G	23.62	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||1504|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||1625|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1503T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1503T>C||||||
1	230395	.	T	A	250.45	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>T|||||1620|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>T|||||1741|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1619A>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1619A>T||||||
1	230433	.	T	C	147.55	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||1658|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||1779|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1657A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1657A>G||||||
1	230543	.	G	A	44.95	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||1768|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||1889|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1767C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1767C>T||||||
1	230625	.	A	C	114.51	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>G|||||1850|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>G|||||1971|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1849T>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1849T>G||||||
1	230688	.	C	T	297.54	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||1913|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||2034|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1912G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1912G>A||||||
1	230721	.	A	G	202.08	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||1946|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||2067|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1945T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1945T>C||||||
1	230747	.	C	A	274.13	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>T|||||1972|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>T|||||2093|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-1971G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-1971G>T||||||
1	230804	rs111808888	C	T	131.58	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||2029|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||2150|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2028G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2028G>A||||||
1	230886	.	C	T	437.98	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||2111|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||2232|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2110G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2110G>A||||||
1	230903	.	T	C	72.2	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||2128|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||2249|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2127A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2127A>G||||||
1	230937	.	C	T	47.21	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||2162|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||2283|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2161G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2161G>A||||||
1	230942	.	A	G	637.13	.	AC=37;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||2167|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||2288|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2166T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2166T>C||||||
1	230976	.	A	G	91.53	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||2201|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||2322|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2200T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2200T>C||||||
1	231005	.	G	A	177.55	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||2230|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||2351|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2229C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2229C>T||||||
1	231011	.	G	A	168.37	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||2236|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||2357|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2235C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2235C>T||||||
1	231046	.	C	T	230.34	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||2271|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||2392|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2270G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2270G>A||||||
1	231054	.	T	A	1611.15	.	AC=108;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>T|||||2279|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>T|||||2400|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2278A>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2278A>T||||||
1	231060	.	A	G	928.85	.	AC=68;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||2285|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||2406|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2284T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2284T>C||||||
1	231070	.	A	T	1469.65	.	AC=91;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>A|||||2295|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>A|||||2416|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2294T>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2294T>A||||||
1	231073	.	T	G	448.58	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>C|||||2298|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>C|||||2419|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2297A>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2297A>C||||||
1	231091	.	G	C	1885.16	.	AC=119;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>G|||||2316|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>G|||||2437|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2315C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2315C>G||||||
1	231123	.	A	G	1572.43	.	AC=104;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||2348|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||2469|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||4989|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2347T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2347T>C||||||
1	231163	.	G	A	360.71	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||2388|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||2509|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||4949|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2387C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2387C>T||||||
1	231175	.	T	G	1254.69	.	AC=79;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>C|||||2400|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>C|||||2521|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>C|||||4937|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2399A>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2399A>C||||||
1	231189	.	A	G	230.71	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||2414|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||2535|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||4923|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2413T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2413T>C||||||
1	231205	.	T	A	3012.36	.	AC=154;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>T|||||2430|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>T|||||2551|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>T|||||4907|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2429A>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2429A>T||||||
1	231214	.	C	A	3082.28	.	AC=159;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>T|||||2439|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>T|||||2560|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>T|||||4898|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2438G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2438G>T||||||
1	231229	.	C	A	5186.07	.	AC=213;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>T|||||2454|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>T|||||2575|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>T|||||4883|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2453G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2453G>T||||||
1	231246	.	T	C	5094.55	.	AC=184;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||2471|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||2592|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||4866|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2470A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2470A>G||||||
1	231455	.	T	A	9759.4	.	AC=181;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>T|||||2680|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>T|||||2801|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>T|||||4657|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2679A>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2679A>T||||||
1	231480	.	G	C	12484.43	.	AC=188;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>G|||||2705|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>G|||||2826|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>G|||||4632|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2704C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2704C>G||||||
1	231489	.	A	T	135.27	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>A|||||2714|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>A|||||2835|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>A|||||4623|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2713T>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2713T>A||||||
1	231497	.	T	C	107.47	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||2722|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||2843|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||4615|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2721A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2721A>G||||||
1	231504	.	G	A	72425.65	.	AC=410;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||2729|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||2850|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||4608|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2728C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2728C>T||||||
1	231512	.	A	G	176.52	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||2737|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||2858|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||4600|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2736T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2736T>C||||||
1	231526	.	C	T	17243.73	.	AC=194;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||2751|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||2872|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||4586|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2750G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2750G>A||||||
1	231548	.	G	C	545.29	.	AC=22;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>G|||||2773|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>G|||||2894|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>G|||||4564|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2772C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2772C>G||||||
1	231550	.	G	T	485.14	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>A|||||2775|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>A|||||2896|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>A|||||4562|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2774C>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2774C>A||||||
1	231557	.	G	A	10521.15	.	AC=191;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||2782|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||2903|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||4555|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2781C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2781C>T||||||
1	231564	.	C	G	813.56	.	AC=42;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>C|||||2789|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>C|||||2910|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>C|||||4548|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.131-2788G>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2788G>C||||||
1	231768	.	A	C	222.43	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>G|||||2993|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>G|||||3114|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>G|||||4344|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2587T>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-2992T>G||||||
1	231782	.	A	G	1258.62	.	AC=57;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||3007|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||3128|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||4330|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2573T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3006T>C||||||
1	231817	.	G	A	71.46	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||3042|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||3163|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||4295|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2538C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3041C>T||||||
1	231860	.	T	C	86.35	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||3085|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||3206|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||4252|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2495A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3084A>G||||||
1	231992	.	C	T	413.61	.	AC=27;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||3217|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||3338|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||4120|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2363G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3216G>A||||||
1	232113	.	G	A	706.98	.	AC=54;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||3338|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||3459|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||3999|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2242C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3337C>T||||||
1	232126	.	T	A	440.49	.	AC=43;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>T|||||3351|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>T|||||3472|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>T|||||3986|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2229A>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3350A>T||||||
1	232133	.	C	A	26.21	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>T|||||3358|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>T|||||3479|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>T|||||3979|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2222G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3357G>T||||||
1	232179	.	G	A	545.54	.	AC=37;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||3404|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||3525|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||3933|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2176C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3403C>T||||||
1	232223	.	C	T	595.7	.	AC=36;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||3448|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||3569|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||3889|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2132G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3447G>A||||||
1	232228	.	C	T	19.14	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||3453|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||3574|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||3884|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2127G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3452G>A||||||
1	232241	.	G	A	72.66	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||3466|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||3587|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||3871|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2114C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3465C>T||||||
1	232278	.	C	T	18.9	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||3503|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||3624|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||3834|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2077G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3502G>A||||||
1	232297	.	C	T	39.48	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||3522|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||3643|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||3815|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+2058G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3521G>A||||||
1	232449	.	G	A	1770.13	.	AC=81;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||3674|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||3795|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||3663|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1906C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3673C>T||||||
1	232488	.	T	C	70.52	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||3713|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||3834|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||3624|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1867A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3712A>G||||||
1	232501	.	A	T	15431.35	.	AC=246;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>A|||||3726|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>A|||||3847|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>A|||||3611|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1854T>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3725T>A||||||
1	232569	.	G	T	676.24	.	AC=51;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>A|||||3794|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>A|||||3915|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>A|||||3543|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1786C>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3793C>A||||||
1	232629	.	T	C	129.95	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||3854|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||3975|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||3483|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1726A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3853A>G||||||
1	232648	.	C	T	272.27	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||3873|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||3994|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||3464|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1707G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3872G>A||||||
1	232701	.	T	C	79.14	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||3926|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||4047|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||3411|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1654A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3925A>G||||||
1	232704	.	T	G	91.67	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>C|||||3929|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>C|||||4050|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>C|||||3408|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1651A>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3928A>C||||||
1	232718	.	G	A	87.91	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||3943|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4064|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||3394|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1637C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3942C>T||||||
1	232757	.	C	T	563.1	.	AC=40;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||3982|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||4103|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||3355|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1598G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1044-3981G>A||||||
1	232930	.	C	G	7319.94	.	AC=170;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>C|||||4155|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>C|||||4276|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>C|||||3182|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1425G>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4124G>C||||||
1	232953	.	T	C	189.5	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||4178|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||4299|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||3159|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1402A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4101A>G||||||
1	232955	.	G	T	8815.66	.	AC=189;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>A|||||4180|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>A|||||4301|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>A|||||3157|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1400C>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4099C>A||||||
1	232960	.	C	A	1507.43	.	AC=80;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>T|||||4185|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>T|||||4306|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>T|||||3152|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1395G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4094G>T||||||
1	232961	.	T	C	8950.16	.	AC=187;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||4186|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||4307|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||3151|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1394A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4093A>G||||||
1	232962	.	G	A	9028.91	.	AC=187;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||4187|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4308|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||3150|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1393C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4092C>T||||||
1	233004	.	A	G	2257.06	.	AC=68;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||4229|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||4350|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||3108|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1351T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4050T>C||||||
1	233011	.	T	C	127.25	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||4236|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||4357|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||3101|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1344A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+4043A>G||||||
1	233086	.	G	A	846.81	.	AC=41;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||4311|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4432|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||3026|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1269C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3968C>T||||||
1	233131	.	G	A	101.21	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||4356|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4477|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||2981|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1224C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3923C>T||||||
1	233145	.	G	T	1903.56	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>A|||||4370|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>A|||||4491|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>A|||||2967|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1210C>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3909C>A||||||
1	233259	.	G	A	110.22	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||4484|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4605|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||2853|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+1096C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3795C>T||||||
1	233370	.	C	T	277.36	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||4595|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||4716|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||2742|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+985G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3684G>A||||||
1	233438	.	T	C	562.26	.	AC=29;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||4663|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||4784|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||2674|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+917A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3616A>G||||||
1	233473	rs115354837	C	G	16041.85	.	AC=226;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>C|||||4698|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>C|||||4819|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>C|||||2639|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+882G>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3581G>C||||||
1	233476	.	G	A	549.83	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||4701|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4822|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||2636|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+879C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3578C>T||||||
1	233487	.	T	G	34.4	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>C|||||4712|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>C|||||4833|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>C|||||2625|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+868A>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3567A>C||||||
1	233515	.	A	G	155.81	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1T>C|||||4740|,G|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1T>C|||||4861|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||2597|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+840T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3539T>C||||||
1	233554	.	T	C	28.97	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1A>G|||||4779|,C|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1A>G|||||4900|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||2558|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+801A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3500A>G||||||
1	233565	.	C	T	2389.75	.	AC=69;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||4790|,T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1G>A|||||4911|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||2547|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+790G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3489G>A||||||
1	233636	.	G	A	2019.17	.	AC=72;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||4861|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4982|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||2476|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+719C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3418C>T||||||
1	233653	.	G	A	388.8	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1C>T|||||4878|,A|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000424429|processed_pseudogene||n.-1C>T|||||4999|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||2459|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+702C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3401C>T||||||
1	233739	.	C	T	1832.15	.	AC=60;ANN=T|upstream_gene_variant|MODIFIER|AP006222.1|ENSG00000241670|transcript|ENST00000450734|processed_pseudogene||n.-1G>A|||||4964|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||2373|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+616G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3315G>A||||||
1	233795	.	G	C	274.75	.	AC=24;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>G|||||2317|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+560C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3259C>G||||||
1	233823	.	G	A	105.59	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||2289|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+532C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3231C>T||||||
1	233832	.	T	A	555.22	.	AC=39;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>T|||||2280|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+523A>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3222A>T||||||
1	233904	.	C	A	1930.91	.	AC=40;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>T|||||2208|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+451G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3150G>T||||||
1	233913	.	A	G	105.42	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||2199|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+442T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3141T>C||||||
1	233942	.	G	A	589.86	.	AC=28;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||2170|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+413C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3112C>T||||||
1	233960	.	A	G	1862.93	.	AC=59;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||2152|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+395T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+3094T>C||||||
1	234094	.	C	T	77.66	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||2018|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+261G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2960G>A||||||
1	234147	.	C	G	10.02	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>C|||||1965|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+208G>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2907G>C||||||
1	234159	.	A	C	5717.0	.	AC=103;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>G|||||1953|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+196T>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2895T>G||||||
1	234211	.	G	C	51.35	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>G|||||1901|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+144C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2843C>G||||||
1	234227	.	C	A	10.04	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>T|||||1885|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+128G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2827G>T||||||
1	234232	.	G	A	1141.83	.	AC=71;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||1880|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+123C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2822C>T||||||
1	234246	.	G	A	172.74	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||1866|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+109C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2808C>T||||||
1	234301	.	T	C	932.69	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||1811|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+54A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2753A>G||||||
1	234308	.	A	G	1526.31	.	AC=66;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||1804|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+47T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2746T>C||||||
1	234313	rs56055731	C	T	16835.5	.	AC=201;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||1799|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/1|n.130+42G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2741G>A||||||
1	234378	.	A	G	11141.11	.	AC=259;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||1734|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2676T>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.107T>C||||||
1	234405	.	T	C	665.13	.	AC=52;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||1707|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2649A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.80A>G||||||
1	234408	rs111659307	A	G	365.94	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||1704|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2646T>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.77T>C||||||
1	234432	rs8179455	A	G	2153.19	.	AC=81;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||1680|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2622T>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.53T>C||||||
1	234445	.	G	A	64.66	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||1667|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2609C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.40C>T||||||
1	234446	rs67749660	C	T	503.94	.	AC=28;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||1666|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2608G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.39G>A||||||
1	234466	.	C	T	8493.67	.	AC=159;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||1646|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2588G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.19G>A||||||
1	234469	.	C	T	303.99	.	AC=35;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||1643|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2585G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.16G>A||||||
1	234481	rs8179403	T	A	17135.22	.	AC=391;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>T|||||1631|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2573A>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA|1/2|n.4A>T||||||
1	234511	.	T	C	38.18	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||27|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||1601|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2543A>G||||||
1	234524	.	T	C	310.29	.	AC=22;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||40|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||1588|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2530A>G||||||
1	234534	rs111281142	A	G	335.58	.	AC=31;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||50|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||1578|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2520T>C||||||
1	234542	.	A	C	537.85	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>G|||||58|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>G|||||1570|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2512T>G||||||
1	234556	rs113278145	C	T	1482.57	.	AC=59;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||72|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||1556|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2498G>A||||||
1	234566	.	T	C	1113.11	.	AC=65;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||82|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||1546|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2488A>G||||||
1	234569	.	T	A	74.47	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>T|||||85|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>T|||||1543|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2485A>T||||||
1	234575	.	C	T	845.57	.	AC=63;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||91|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||1537|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2479G>A||||||
1	234589	.	T	G	100.92	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>C|||||105|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>C|||||1523|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2465A>C||||||
1	234609	.	T	C	2109.1	.	AC=110;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||125|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||1503|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2445A>G||||||
1	234675	.	T	C	10.73	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||191|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||1437|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2379A>G||||||
1	234681	.	C	G	322.55	.	AC=33;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>C|||||197|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>C|||||1431|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2373G>C||||||
1	234708	.	C	G	30.04	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>C|||||224|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>C|||||1404|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2346G>C||||||
1	234713	.	T	G	1739.78	.	AC=108;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>C|||||229|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>C|||||1399|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2341A>C||||||
1	234760	rs114998281	A	T	23776.38	.	AC=299;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>A|||||276|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>A|||||1352|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2294T>A||||||
1	234784	.	G	C	191.59	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||300|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>G|||||1328|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2270C>G||||||
1	234894	.	G	A	92.1	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||410|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||1218|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2160C>T||||||
1	235012	.	G	A	364.26	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||528|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||1100|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+2042C>T||||||
1	235087	.	T	G	120.42	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>C|||||603|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>C|||||1025|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1967A>C||||||
1	235115	.	G	T	9065.15	.	AC=61;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>A|||||631|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>A|||||997|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1939C>A||||||
1	235162	.	T	C	8098.45	.	AC=60;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||678|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||950|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1892A>G||||||
1	235188	.	T	C	1063.85	.	AC=35;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||704|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||924|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1866A>G||||||
1	235207	.	A	G	147.19	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||723|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||905|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1847T>C||||||
1	235218	.	A	G	75.28	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||734|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||894|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1836T>C||||||
1	235363	.	G	A	675.81	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||879|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||749|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1691C>T||||||
1	235424	.	C	T	69.77	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||940|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||688|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1630G>A||||||
1	235438	.	T	C	36.83	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||954|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>G|||||674|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1616A>G||||||
1	235509	.	C	T	78.26	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||1025|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||603|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1545G>A||||||
1	235511	.	G	C	36.15	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||1027|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>G|||||601|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1543C>G||||||
1	235516	.	G	C	120.69	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||1032|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>G|||||596|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1538C>G||||||
1	235610	.	C	T	892.31	.	AC=55;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||1126|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||502|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1444G>A||||||
1	235637	.	G	A	148.29	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1153|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||475|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1417C>T||||||
1	235669	.	A	C	2803.08	.	AC=54;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>G|||||1185|,C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>G|||||443|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1385T>G||||||
1	235691	.	T	A	273.8	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>T|||||1207|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>T|||||421|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1363A>T||||||
1	235697	.	G	A	122.07	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1213|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||415|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1357C>T||||||
1	235738	.	G	A	5830.91	.	AC=55;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1254|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||374|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1316C>T||||||
1	235774	.	C	T	487.14	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||1290|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||338|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1280G>A||||||
1	235782	.	A	G	247.52	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||1298|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||330|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1272T>C||||||
1	235795	.	A	G	138.97	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||1311|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||317|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1259T>C||||||
1	235810	.	C	T	516.43	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||1326|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||302|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1244G>A||||||
1	235815	.	G	A	542.33	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1331|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||297|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1239C>T||||||
1	235844	.	C	G	32526.29	.	AC=445;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>C|||||1360|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>C|||||268|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1210G>C||||||
1	235888	.	A	G	393.48	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||1404|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>C|||||224|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1166T>C||||||
1	235919	.	A	T	130.64	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>A|||||1435|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257T>A|||||193|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1135T>A||||||
1	235920	.	C	T	228.17	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||1436|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>A|||||192|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1134G>A||||||
1	235929	rs115623823	G	A	22558.11	.	AC=142;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1445|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||183|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1125C>T||||||
1	235956	.	G	T	399.41	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>A|||||1472|,T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>A|||||156|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1098C>A||||||
1	235976	.	C	A	60196.47	.	AC=588;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>T|||||1492|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257G>T|||||136|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1078G>T||||||
1	235987	.	G	A	592.66	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1503|,A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257C>T|||||125|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+1067C>T||||||
1	236055	.	T	G	16356.68	.	AC=65;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>C|||||1571|,G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA||n.*2257A>C|||||57|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+999A>C||||||
1	236128	.	G	A	166.21	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1644|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+926C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.2241C>T||||||
1	236139	.	T	C	128.85	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||1655|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+915A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.2230A>G||||||
1	236162	.	T	A	648.23	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>T|||||1678|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+892A>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.2207A>T||||||
1	236192	.	C	T	2303.23	.	AC=50;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||1708|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+862G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.2177G>A||||||
1	236200	.	T	C	2617.41	.	AC=49;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||1716|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+854A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.2169A>G||||||
1	236258	.	C	T	49.4	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||1774|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+796G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.2111G>A||||||
1	236304	.	A	C	51.0	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>G|||||1820|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+750T>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.2065T>G||||||
1	236452	.	G	A	737.27	.	AC=37;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||1968|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+602C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1917C>T||||||
1	236594	.	C	T	42.22	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||2110|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+460G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1775G>A||||||
1	236704	.	A	T	154.95	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>A|||||2220|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+350T>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1665T>A||||||
1	236721	.	C	T	1073.32	.	AC=66;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||2237|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+333G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1648G>A||||||
1	236780	.	T	C	405.76	.	AC=24;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||2296|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+274A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1589A>G||||||
1	236793	.	T	C	559.09	.	AC=40;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||2309|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+261A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1576A>G||||||
1	236848	.	T	C	507.97	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||2364|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+206A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1521A>G||||||
1	236964	.	C	T	334.65	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||2480|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+90G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1405G>A||||||
1	236967	.	T	G	217.27	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>C|||||2483|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+87A>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1402A>C||||||
1	236998	.	C	A	82.29	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>T|||||2514|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+56G>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1371G>T||||||
1	237027	.	G	A	383.48	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||2543|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+27C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1342C>T||||||
1	237041	.	G	A	665.99	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||2557|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/2|n.1043+13C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1328C>T||||||
1	237061	.	C	A	200.01	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>T|||||2577|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1308G>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.1036G>T||||||
1	237109	.	A	G	382.2	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||2625|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1260T>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.988T>C||||||
1	237157	.	C	G	10.6	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>C|||||2673|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1212G>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.940G>C||||||
1	237185	.	C	A	1024.44	.	AC=67;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>T|||||2701|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1184G>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.912G>T||||||
1	237256	.	C	T	181.4	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||2772|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1113G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.841G>A||||||
1	237272	.	T	A	1991.78	.	AC=102;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>T|||||2788|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1097A>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.825A>T||||||
1	237346	.	C	T	318.99	.	AC=27;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||2862|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1023G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.751G>A||||||
1	237366	.	T	C	28.78	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||2882|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.1003A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.731A>G||||||
1	237467	.	C	G	39.07	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>C|||||2983|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.902G>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.630G>C||||||
1	237470	.	G	A	353.95	.	AC=35;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||2986|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.899C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.627C>T||||||
1	237490	.	C	A	987.05	.	AC=72;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>T|||||3006|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.879G>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.607G>T||||||
1	237505	.	T	C	285.72	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||3021|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.864A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.592A>G||||||
1	237517	.	C	A	7.23	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>T|||||3033|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.852G>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.580G>T||||||
1	237666	.	A	T	46.58	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>A|||||3182|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.703T>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.431T>A||||||
1	237752	.	A	G	1594.51	.	AC=47;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||3268|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.617T>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.345T>C||||||
1	237763	rs112186068	G	A	22058.25	.	AC=326;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||3279|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.606C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.334C>T||||||
1	237805	.	A	G	1323.55	.	AC=79;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||3321|,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.564T>C||||||,G|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.292T>C||||||
1	237820	.	G	A	346.18	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||3336|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.549C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.277C>T||||||
1	237844	.	T	A	68.47	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>T|||||3360|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.525A>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.253A>T||||||
1	237872	.	G	C	126.46	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||3388|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.497C>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.225C>G||||||
1	237877	.	C	T	106.57	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||3393|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.492G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.220G>A||||||
1	237881	rs114112614	G	T	14248.4	.	AC=102;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>A|||||3397|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|4/4|n.488C>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|2/3|n.216C>A||||||
1	237996	.	T	C	1549.04	.	AC=57;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||3512|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.414-41A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.142-41A>G||||||
1	238011	.	C	T	37.82	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||3527|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.414-56G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.142-56G>A||||||
1	238133	.	A	T	39.92	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>A|||||3649|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.414-178T>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.142-178T>A||||||
1	238138	.	G	C	7.31	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||3654|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.414-183C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.142-183C>G||||||
1	238142	.	C	T	22.06	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||3658|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.414-187G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.142-187G>A||||||
1	238164	.	G	A	5527.31	.	AC=80;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||3680|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.414-209C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.142-209C>T||||||
1	238216	.	A	C	396.57	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>G|||||3732|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+202T>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+202T>G||||||
1	238267	.	C	T	855.81	.	AC=40;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||3783|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+151G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+151G>A||||||
1	238271	.	T	C	928.23	.	AC=54;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||3787|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+147A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+147A>G||||||
1	238276	.	A	G	11.83	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||3792|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+142T>C||||||,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+142T>C||||||
1	238282	.	T	C	474.2	.	AC=39;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||3798|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+136A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+136A>G||||||
1	238300	.	G	C	104.63	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||3816|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+118C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+118C>G||||||
1	238310	.	A	C	1192.64	.	AC=48;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>G|||||3826|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+108T>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+108T>G||||||
1	238319	.	G	C	77.37	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||3835|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+99C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+99C>G||||||
1	238325	.	G	A	30.9	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||3841|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+93C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+93C>T||||||
1	238390	.	T	C	53.71	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||3906|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+28A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+28A>G||||||
1	238411	.	G	C	130.26	.	AC=12;ANN=C|splice_region_variant&intron_variant|LOW|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/3|n.413+7C>G||||||,C|splice_region_variant&intron_variant|LOW|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/2|n.141+7C>G||||||,C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||3927|
1	238467	.	T	C	394.12	.	AC=33;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||3983|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/4|n.364A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/3|n.92A>G||||||
1	238490	.	C	T	57.17	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||4006|,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/4|n.341G>A||||||,T|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/3|n.69G>A||||||
1	238509	.	T	C	51.44	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||4025|,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/4|n.322A>G||||||,C|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/3|n.50A>G||||||
1	238550	.	G	A	10.84	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||4066|,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|3/4|n.281C>T||||||,A|non_coding_exon_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA|1/3|n.9C>T||||||
1	238584	.	T	A	322.68	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>T|||||4100|,A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>T|||||26|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-17A>T||||||
1	238598	.	C	T	370.8	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||4114|,T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>A|||||40|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-31G>A||||||
1	238635	.	G	C	439.64	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||4151|,C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>G|||||77|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-68C>G||||||
1	238643	.	G	A	234.12	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||4159|,A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||85|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-76C>T||||||
1	238876	.	G	C	39.84	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>G|||||4392|,C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>G|||||318|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-309C>G||||||
1	239122	.	A	G	831.87	.	AC=49;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||4638|,G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1T>C|||||564|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-555T>C||||||
1	239164	.	G	A	306.29	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>T|||||4680|,A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||606|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-597C>T||||||
1	239237	.	C	T	40.14	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1G>A|||||4753|,T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>A|||||679|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-670G>A||||||
1	239240	.	T	C	26.03	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1A>G|||||4756|,C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>G|||||682|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-673A>G||||||
1	239258	.	G	T	158.22	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>A|||||4774|,T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>A|||||700|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-691C>A||||||
1	239339	.	A	G	350.1	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1T>C|||||4855|,G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1T>C|||||781|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-772T>C||||||
1	239482	.	G	T	147.84	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000442116|lincRNA||n.-1C>A|||||4998|,T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>A|||||924|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-915C>A||||||
1	239532	.	C	T	171.0	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>A|||||974|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-965G>A||||||
1	239720	.	T	C	270.04	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>G|||||1162|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-1153A>G||||||
1	239933	.	A	C	62.3	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1T>G|||||1375|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-1366T>G||||||
1	240094	.	G	T	9.34	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>A|||||1536|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-1527C>A||||||
1	240147	.	C	T	1030.46	.	AC=94;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>A|||||1589|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-1580G>A||||||
1	240347	.	G	A	21.48	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||1789|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-1780C>T||||||
1	240435	.	C	G	13685.18	.	AC=197;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>C|||||1877|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-1868G>C||||||
1	240789	.	T	G	193.35	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>C|||||2231|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2222A>C||||||
1	240853	.	G	A	284.98	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||2295|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2286C>T||||||
1	240898	.	T	G	1634.1	.	AC=135;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>C|||||2340|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2331A>C||||||
1	240917	.	T	G	282.84	.	AC=31;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>C|||||2359|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2350A>C||||||
1	241027	rs112327644	G	A	8541.47	.	AC=167;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||2469|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2460C>T||||||
1	241053	.	T	C	71.43	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>G|||||2495|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2486A>G||||||
1	241194	rs71222829	G	A	257.37	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||2636|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2627C>T||||||
1	241263	rs7415228	C	T	524.67	.	AC=37;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>A|||||2705|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2696G>A||||||
1	241320	rs79974410	A	G	909.37	.	AC=84;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1T>C|||||2762|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2753T>C||||||
1	241369	rs11490246	C	T	8166.61	.	AC=341;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>A|||||2811|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2802G>A||||||
1	241377	.	G	A	20.58	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||2819|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2810C>T||||||
1	241403	.	G	A	83.98	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||2845|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2836C>T||||||
1	241409	.	G	A	6.07	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||2851|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-2842C>T||||||
1	241934	.	A	G	55.66	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1T>C|||||3376|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-3367T>C||||||
1	242239	.	C	G	5.77	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>C|||||3681|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-3672G>C||||||
1	242249	.	G	C	6.39	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>G|||||3691|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-3682C>G||||||
1	242426	.	G	A	183.0	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||3868|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-3859C>T||||||
1	242536	.	G	T	69.21	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>A|||||3978|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-3969C>A||||||
1	242960	.	T	C	144.49	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>G|||||4402|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-4393A>G||||||
1	242987	.	A	C	14.83	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1T>G|||||4429|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-4420T>G||||||
1	242989	.	C	T	24.01	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1G>A|||||4431|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-4422G>A||||||
1	243163	.	T	C	27.36	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1A>G|||||4605|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-4596A>G||||||
1	243378	.	G	A	52.54	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1C>T|||||4820|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-4811C>T||||||
1	243509	.	A	C	45.97	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000448958|lincRNA||n.-1T>G|||||4951|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-4942T>G||||||
1	243766	.	A	G	1059.78	.	AC=86;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-5199T>C||||||
1	243782	.	C	A	172.77	.	AC=7;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-5215G>T||||||
1	243881	.	T	C	98.6	.	AC=12;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-5314A>G||||||
1	243957	.	A	G	4.7	.	AC=1;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-5390T>C||||||
1	244209	.	C	T	121.09	.	AC=6;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-5642G>A||||||
1	244288	.	A	G	540.59	.	AC=41;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-5721T>C||||||
1	244646	.	C	T	406.45	.	AC=44;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6079G>A||||||
1	244967	.	A	G	273.01	.	AC=9;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6400T>C||||||
1	244974	.	G	A	178.77	.	AC=4;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6407C>T||||||
1	245014	.	C	T	62.9	.	AC=3;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6447G>A||||||
1	245015	.	G	A	354.11	.	AC=24;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6448C>T||||||
1	245024	.	C	A	9750.66	.	AC=134;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6457G>T||||||
1	245088	.	T	C	1874.0	.	AC=112;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6521A>G||||||
1	245264	.	A	G	314.05	.	AC=29;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6697T>C||||||
1	245328	.	A	G	731.25	.	AC=55;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6761T>C||||||
1	245378	.	C	A	668.65	.	AC=39;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6811G>T||||||
1	245405	.	T	C	374.35	.	AC=34;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6838A>G||||||
1	245510	.	C	T	31.87	.	AC=7;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-6943G>A||||||
1	246059	.	C	T	112.16	.	AC=10;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-7492G>A||||||
1	246060	.	G	A	142.71	.	AC=1;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-7493C>T||||||
1	246189	.	G	A	29.78	.	AC=4;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-7622C>T||||||
1	246232	.	G	A	26.2	.	AC=3;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-7665C>T||||||
1	246308	.	C	A	10.33	.	AC=2;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-7741G>T||||||
1	246815	.	T	C	25.56	.	AC=5;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-8248A>G||||||
1	246977	.	A	C	5345.56	.	AC=178;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-8410T>G||||||
1	247175	.	T	C	20.25	.	AC=3;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-8608A>G||||||
1	247386	.	G	A	857.93	.	AC=42;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-8819C>T||||||
1	247428	.	G	T	6005.11	.	AC=168;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-8861C>A||||||
1	247519	.	G	A	84.35	.	AC=1;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-8952C>T||||||
1	247585	.	G	A	164.43	.	AC=20;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9018C>T||||||
1	247710	.	T	C	1539.98	.	AC=86;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9143A>G||||||
1	247783	.	C	T	138.65	.	AC=11;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9216G>A||||||
1	247792	.	C	A	456.38	.	AC=11;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9225G>T||||||
1	247803	.	T	C	8.93	.	AC=2;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9236A>G||||||
1	247985	.	C	T	74.73	.	AC=11;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9418G>A||||||
1	248117	.	G	A	76.59	.	AC=9;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9550C>T||||||
1	248288	.	T	C	46.5	.	AC=7;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9721A>G||||||
1	248304	.	G	C	22.24	.	AC=5;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9737C>G||||||
1	248391	.	G	A	742.75	.	AC=47;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9824C>T||||||
1	248454	.	T	C	46.43	.	AC=7;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-9887A>G||||||
1	248772	.	C	T	104.97	.	AC=4;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.264-10205G>A||||||
1	248845	.	T	C	148.76	.	AC=9;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+10172A>G||||||
1	249090	.	G	C	47.81	.	AC=8;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9927C>G||||||
1	249276	rs115018998	T	C	303.93	.	AC=14;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9741A>G||||||
1	249558	.	C	T	81.03	.	AC=14;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9459G>A||||||
1	249792	.	G	A	265.93	.	AC=26;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9225C>T||||||
1	249802	.	T	C	34.07	.	AC=10;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9215A>G||||||
1	249817	.	T	C	34.75	.	AC=7;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9200A>G||||||
1	249838	.	A	G	341.82	.	AC=26;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9179T>C||||||
1	249853	.	G	A	36.83	.	AC=5;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9164C>T||||||
1	249862	.	G	A	104.66	.	AC=16;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9155C>T||||||
1	249949	.	C	A	36.14	.	AC=6;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9068G>T||||||
1	249976	.	G	A	67.46	.	AC=10;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+9041C>T||||||
1	250184	.	G	A	15.8	.	AC=7;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8833C>T||||||
1	250191	.	C	A	118.89	.	AC=9;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8826G>T||||||
1	250234	.	T	G	114.16	.	AC=17;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8783A>C||||||
1	250286	.	A	T	10.28	.	AC=3;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8731T>A||||||
1	250300	.	C	T	51.6	.	AC=8;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8717G>A||||||
1	250425	.	A	G	22.33	.	AC=7;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8592T>C||||||
1	250509	.	C	A	40.69	.	AC=5;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8508G>T||||||
1	250642	.	G	T	255.33	.	AC=22;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8375C>A||||||
1	250654	.	T	C	12.77	.	AC=4;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8363A>G||||||
1	251012	.	G	T	9.73	.	AC=2;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+8005C>A||||||
1	251145	.	T	C	147.37	.	AC=13;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+7872A>G||||||
1	251245	.	G	A	170.55	.	AC=15;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+7772C>T||||||
1	251257	.	C	G	352.89	.	AC=18;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+7760G>C||||||
1	251410	.	C	G	39.72	.	AC=8;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+7607G>C||||||
1	251496	.	C	T	61.81	.	AC=9;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+7521G>A||||||
1	251663	.	C	G	6236.92	.	AC=142;ANN=G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+7354G>C||||||
1	252144	.	T	C	43.33	.	AC=1;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6873A>G||||||
1	252218	.	G	C	24.49	.	AC=1;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6799C>G||||||
1	252302	.	T	C	93.98	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||4966|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6715A>G||||||
1	252358	.	G	A	19.02	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>T|||||4910|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6659C>T||||||
1	252472	.	A	G	335.86	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||4796|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6545T>C||||||
1	252479	.	T	C	235.46	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||4789|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6538A>G||||||
1	252639	.	A	G	118.31	.	AC=23;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||4629|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6378T>C||||||
1	252749	.	C	A	93.87	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>T|||||4519|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6268G>T||||||
1	252771	.	T	C	6.73	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||4497|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6246A>G||||||
1	252780	.	G	A	1014.03	.	AC=82;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>T|||||4488|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6237C>T||||||
1	252796	.	T	C	1666.45	.	AC=115;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||4472|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6221A>G||||||
1	252934	.	C	G	2139.99	.	AC=110;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>C|||||4334|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+6083G>C||||||
1	253068	.	C	A	167.21	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>T|||||4200|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5949G>T||||||
1	253100	.	G	A	198.9	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>T|||||4168|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5917C>T||||||
1	253129	.	G	C	913.07	.	AC=56;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>G|||||4139|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5888C>G||||||
1	253228	.	G	A	556.51	.	AC=53;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>T|||||4040|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5789C>T||||||
1	253601	.	C	T	76.38	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>A|||||3667|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5416G>A||||||
1	253667	.	T	C	46.09	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||3601|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5350A>G||||||
1	253748	.	G	A	23.05	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>T|||||3520|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5269C>T||||||
1	253845	.	A	T	49.1	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>A|||||3423|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5172T>A||||||
1	253936	.	C	G	39.51	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>C|||||3332|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5081G>C||||||
1	253954	.	C	A	71.95	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>T|||||3314|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+5063G>T||||||
1	254160	.	T	A	4.72	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>T|||||3108|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4857A>T||||||
1	254186	.	T	C	972.12	.	AC=40;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||3082|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4831A>G||||||
1	254283	.	G	A	769.0	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>T|||||2985|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4734C>T||||||
1	254285	.	G	C	75.1	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>G|||||2983|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4732C>G||||||
1	254397	.	T	C	153.79	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||2871|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4620A>G||||||
1	254438	.	C	T	40.23	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>A|||||2830|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4579G>A||||||
1	254441	.	T	C	2031.22	.	AC=74;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||2827|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4576A>G||||||
1	254451	.	T	G	80.11	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>C|||||2817|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4566A>C||||||
1	254489	.	T	C	37.58	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||2779|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4528A>G||||||
1	254552	.	A	G	174.61	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||2716|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4465T>C||||||
1	254569	.	A	G	77.0	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||2699|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4448T>C||||||
1	254608	.	C	T	55.91	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>A|||||2660|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4409G>A||||||
1	254680	.	A	G	1859.65	.	AC=130;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||2588|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4337T>C||||||
1	254728	.	T	G	83.52	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>C|||||2540|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4289A>C||||||
1	254855	.	C	A	40.0	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>T|||||2413|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4162G>T||||||
1	254886	.	T	A	28.32	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>T|||||2382|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4131A>T||||||
1	254950	.	T	C	95.35	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||2318|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+4067A>G||||||
1	255078	.	A	G	87.72	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||2190|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3939T>C||||||
1	255090	.	C	A	407.08	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>T|||||2178|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3927G>T||||||
1	255096	.	C	T	922.93	.	AC=69;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>A|||||2172|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3921G>A||||||
1	255137	.	T	G	657.56	.	AC=37;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>C|||||2131|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3880A>C||||||
1	255167	.	T	G	98.88	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>C|||||2101|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3850A>C||||||
1	255322	.	T	A	62.71	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>T|||||1946|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3695A>T||||||
1	255471	.	A	G	169.16	.	AC=26;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||1797|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3546T>C||||||
1	255497	.	C	T	527.85	.	AC=36;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>A|||||1771|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3520G>A||||||
1	255503	.	T	C	84.72	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||1765|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3514A>G||||||
1	255633	.	A	G	759.48	.	AC=34;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||1635|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3384T>C||||||
1	255923	.	G	C	93.82	.	AC=15;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>G|||||1345|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3094C>G||||||
1	255955	.	A	T	355.46	.	AC=35;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>A|||||1313|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+3062T>A||||||
1	256022	.	A	G	398.27	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||1246|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2995T>C||||||
1	256023	.	A	G	879.96	.	AC=38;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||1245|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2994T>C||||||
1	256498	.	A	G	2434.95	.	AC=84;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||770|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2519T>C||||||
1	256586	.	T	G	2059.89	.	AC=46;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>C|||||682|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2431A>C||||||
1	256692	.	C	A	376.36	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>T|||||576|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2325G>T||||||
1	256736	.	C	T	363.02	.	AC=35;ANN=T|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510G>A|||||532|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2281G>A||||||
1	256789	.	A	G	40.68	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||479|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2228T>C||||||
1	256807	.	T	C	150.99	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||461|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2210A>G||||||
1	256862	.	A	G	16.02	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510T>C|||||406|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2155T>C||||||
1	256922	.	T	A	179.09	.	AC=22;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>T|||||346|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+2095A>T||||||
1	257092	.	G	A	555.77	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510C>T|||||176|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+1925C>T||||||
1	257159	.	T	C	75.81	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.*510A>G|||||109|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+1858A>G||||||
1	257881	.	T	C	323.67	.	AC=23;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+1136A>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA|1/1|n.106-209A>G||||||
1	258137	.	G	A	274.19	.	AC=14;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+880C>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA|1/1|n.106-465C>T||||||
1	258385	.	C	T	30.89	.	AC=5;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+632G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA|1/1|n.105+632G>A||||||
1	258538	.	G	C	26.15	.	AC=3;ANN=C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+479C>G||||||,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA|1/1|n.105+479C>G||||||
1	258589	.	C	A	124.0	.	AC=4;ANN=A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+428G>T||||||,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA|1/1|n.105+428G>T||||||
1	258930	.	C	T	240.52	.	AC=17;ANN=T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|2/3|n.263+87G>A||||||,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA|1/1|n.105+87G>A||||||
1	259189	.	C	T	718.44	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1G>A|||||68|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-68G>A||||||
1	259207	.	A	C	262.57	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1T>G|||||86|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-86T>G||||||
1	259264	.	T	A	585.42	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1A>T|||||143|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-143A>T||||||
1	259283	.	G	A	134.76	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1C>T|||||162|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-162C>T||||||
1	259883	.	A	G	15.09	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1T>C|||||762|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-762T>C||||||
1	260186	.	G	C	516.62	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1C>G|||||1065|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-1065C>G||||||
1	260198	rs115779577	T	C	75.44	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1A>G|||||1077|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-1077A>G||||||
1	260257	.	C	A	106.45	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1G>T|||||1136|,A|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-1136G>T||||||
1	261542	.	T	C	93.08	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1A>G|||||2421|,C|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-2421A>G||||||
1	261543	.	A	G	25.64	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1T>C|||||2422|,G|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.159-2422T>C||||||
1	263940	.	A	T	31.49	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000335577|lincRNA||n.-1T>A|||||4819|,T|intron_variant|MODIFIER|AP006222.2|ENSG00000228463|transcript|ENST00000424587|lincRNA|1/3|n.158+3156T>A||||||
1	324375	.	T	C	50.04	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA||n.-1T>C|||||381|,C|upstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.-1T>C|||||1721|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000608420|lincRNA||n.*438T>C|||||4022|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000432964|lincRNA||n.*575T>C|||||3319|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696T>C|||||2278|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457T>C|||||2172|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA|3/3|n.311+30T>C||||||,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA|2/2|n.550+30T>C||||||,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+2147T>C||||||,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA|1/1|n.403-376T>C||||||,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+30T>C||||||
1	324790	.	G	A	8.0	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.-1G>A|||||1306|,A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1G>A|||||4994|,A|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477C>T|||||4641|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000608420|lincRNA||n.*438G>A|||||4437|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000432964|lincRNA||n.*575G>A|||||3734|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573G>A|||||329|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696G>A|||||2693|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457G>A|||||2587|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+2562G>A||||||,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+445G>A||||||,A|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/2|n.35G>A||||||,A|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA|4/4|n.663G>A||||||,A|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA|2/2|n.442G>A||||||
1	324822	.	A	T	196.56	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.-1A>T|||||1274|,T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1A>T|||||4962|,T|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477T>A|||||4609|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000608420|lincRNA||n.*438A>T|||||4469|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000432964|lincRNA||n.*575A>T|||||3766|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573A>T|||||361|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696A>T|||||2725|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457A>T|||||2619|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+2594A>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+477A>T||||||,T|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/2|n.67A>T||||||,T|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA|4/4|n.695A>T||||||,T|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA|2/2|n.474A>T||||||
1	325075	.	G	C	322.42	.	AC=22;ANN=C|upstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.-1G>C|||||1021|,C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1G>C|||||4709|,C|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477C>G|||||4356|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746G>C|||||202|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000608420|lincRNA||n.*438G>C|||||4722|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000432964|lincRNA||n.*575G>C|||||4019|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573G>C|||||614|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696G>C|||||2978|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457G>C|||||2872|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607G>C|||||120|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+2847G>C||||||,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+730G>C||||||,C|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/2|n.320G>C||||||
1	325127	.	T	C	624.18	.	AC=34;ANN=C|upstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.-1T>C|||||969|,C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1T>C|||||4657|,C|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477A>G|||||4304|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746T>C|||||254|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000608420|lincRNA||n.*438T>C|||||4774|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000432964|lincRNA||n.*575T>C|||||4071|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573T>C|||||666|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696T>C|||||3030|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457T>C|||||2924|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607T>C|||||172|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+2899T>C||||||,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+782T>C||||||,C|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/2|n.372T>C||||||
1	325155	.	C	A	816.0	.	AC=44;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.-1C>A|||||941|,A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1C>A|||||4629|,A|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477G>T|||||4276|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746C>A|||||282|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000608420|lincRNA||n.*438C>A|||||4802|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000432964|lincRNA||n.*575C>A|||||4099|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573C>A|||||694|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696C>A|||||3058|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457C>A|||||2952|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607C>A|||||200|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+2927C>A||||||,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+810C>A||||||,A|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/2|n.400C>A||||||
1	325780	.	C	T	9.17	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.-1C>T|||||316|,T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1C>T|||||4004|,T|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477G>A|||||3651|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746C>T|||||907|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000432964|lincRNA||n.*575C>T|||||4724|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573C>T|||||1319|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696C>T|||||3683|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457C>T|||||3577|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607C>T|||||825|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+3552C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+1435C>T||||||,T|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/2|n.1025C>T||||||
1	326146	.	G	A	35.4	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1G>A|||||3638|,A|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477C>T|||||3285|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746G>A|||||1273|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573G>A|||||1685|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696G>A|||||4049|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457G>A|||||3943|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607G>A|||||1191|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+3918G>A||||||,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+1801G>A||||||,A|non_coding_exon_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/2|n.1391G>A||||||,A|non_coding_exon_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene|1/2|n.51G>A||||||
1	326944	.	C	T	128.71	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1C>T|||||2840|,T|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477G>A|||||2487|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746C>T|||||2071|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573C>T|||||2483|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696C>T|||||4847|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457C>T|||||4741|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607C>T|||||1989|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/1|n.1759+430C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene|1/1|n.474+375C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+4716C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+2599C>T||||||
1	326957	.	C	T	171.22	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1C>T|||||2827|,T|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477G>A|||||2474|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746C>T|||||2084|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573C>T|||||2496|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696C>T|||||4860|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457C>T|||||4754|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607C>T|||||2002|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/1|n.1759+443C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene|1/1|n.474+388C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+4729C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+2612C>T||||||
1	326999	.	C	T	126.6	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA||n.-1C>T|||||2785|,T|downstream_gene_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene||n.*2477G>A|||||2432|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440038|lincRNA||n.*746C>T|||||2126|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000423728|lincRNA||n.*573C>T|||||2538|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601486|lincRNA||n.*696C>T|||||4902|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000599771|lincRNA||n.*457C>T|||||4796|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000419160|lincRNA||n.*607C>T|||||2044|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA|1/1|n.1759+485C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene|1/1|n.475-349C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.151+4771C>T||||||,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.258+2654C>T||||||
1	330151	.	G	A	5.74	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.4|ENSG00000224813|transcript|ENST00000445840|transcribed_unprocessed_pseudogene||n.-1G>A|||||3975|,A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.-1G>A|||||3978|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000425496|lincRNA||n.*2661G>A|||||1698|,A|downstream_gene_variant|MODIFIER|RP4-669L17.8|ENSG00000250575|transcript|ENST00000514436|unprocessed_pseudogene||n.*1239G>A|||||2039|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA|1/2|n.152-3978G>A||||||,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000601814|lincRNA|2/2|n.259-3978G>A||||||,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431812|lincRNA|1/1|n.193+175G>A||||||,A|non_coding_exon_variant|MODIFIER|CICP7|ENSG00000233653|transcript|ENST00000432723|processed_pseudogene|1/2|n.2086C>T||||||
1	345375	.	T	C	24.25	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735T>C|||||2569|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+11078T>C||||||
1	345607	.	G	A	82.66	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735G>A|||||2801|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+11310G>A||||||
1	345696	.	A	C	8.57	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735A>C|||||2890|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+11399A>C||||||
1	345858	.	G	C	470.96	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735G>C|||||3052|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+11561G>C||||||
1	345937	.	C	T	48.1	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735C>T|||||3131|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+11640C>T||||||
1	346841	.	A	G	399.0	.	AC=32;ANN=G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735A>G|||||4035|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+12544A>G||||||
1	346929	.	G	T	9.82	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735G>T|||||4123|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+12632G>T||||||
1	347209	.	A	T	4.87	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735A>T|||||4403|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+12912A>T||||||
1	347237	.	A	G	23.37	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735A>G|||||4431|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+12940A>G||||||
1	347804	.	A	G	12.23	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455464|lincRNA||n.*735A>G|||||4998|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+13507A>G||||||
1	348019	.	C	G	35.73	.	AC=4;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+13722C>G||||||
1	348307	.	C	G	15.3	.	AC=3;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+14010C>G||||||
1	348405	.	C	T	44.7	.	AC=6;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+14108C>T||||||
1	350276	.	T	C	6.41	.	AC=1;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+15979T>C||||||
1	352252	.	G	C	43.99	.	AC=5;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+17955G>C||||||
1	352369	.	A	G	33.88	.	AC=4;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+18072A>G||||||
1	352451	.	T	G	302.15	.	AC=22;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+18154T>G||||||
1	352682	.	C	T	108.68	.	AC=9;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+18385C>T||||||
1	352704	.	T	C	8.13	.	AC=3;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+18407T>C||||||
1	353776	.	C	T	88.2	.	AC=8;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+19479C>T||||||
1	354158	.	G	A	123.1	.	AC=9;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+19861G>A||||||
1	354807	.	T	C	25.29	.	AC=4;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+20510T>C||||||
1	355017	.	C	T	71.02	.	AC=6;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+20720C>T||||||
1	355280	rs2527589	G	A	1502.79	.	AC=59;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+20983G>A||||||
1	356070	.	G	A	33.84	.	AC=5;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+21773G>A||||||
1	356197	.	G	A	66.98	.	AC=4;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+21900G>A||||||
1	356250	.	T	C	5.88	.	AC=1;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+21953T>C||||||
1	356483	.	G	A	200.81	.	AC=2;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+22186G>A||||||
1	356537	.	G	A	15.32	.	AC=2;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+22240G>A||||||
1	356744	.	C	G	92.45	.	AC=7;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+22447C>G||||||
1	357345	.	C	G	51.17	.	AC=7;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+23048C>G||||||
1	357529	.	C	T	636.48	.	AC=40;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+23232C>T||||||
1	357602	.	C	G	13.38	.	AC=2;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+23305C>G||||||
1	357635	.	T	A	5.08	.	AC=1;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+23338T>A||||||
1	358440	.	T	A	95.52	.	AC=6;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+24143T>A||||||
1	358576	.	T	C	24.14	.	AC=1;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+24279T>C||||||
1	358875	.	A	G	873.87	.	AC=42;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+24578A>G||||||
1	358921	.	A	G	133.66	.	AC=12;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+24624A>G||||||
1	359465	.	A	T	26.38	.	AC=2;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+25168A>T||||||
1	359681	.	A	G	42.69	.	AC=5;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+25384A>G||||||
1	359825	.	T	C	32.77	.	AC=3;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+25528T>C||||||
1	360627	.	G	T	12.43	.	AC=4;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+26330G>T||||||
1	361118	.	T	G	60.34	.	AC=9;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+26821T>G||||||
1	361332	.	T	C	26.19	.	AC=4;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27035T>C||||||
1	361334	.	T	C	66.43	.	AC=7;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27037T>C||||||
1	361413	.	C	A	37.66	.	AC=5;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27116C>A||||||
1	361734	.	G	A	136.92	.	AC=13;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27437G>A||||||
1	361808	.	C	T	77.08	.	AC=8;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27511C>T||||||
1	361900	.	C	A	9.24	.	AC=3;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27603C>A||||||
1	362144	.	A	G	13.41	.	AC=2;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27847A>G||||||
1	362244	.	A	G	12.82	.	AC=3;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+27947A>G||||||
1	362819	.	C	T	161.99	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20C>T|||||4821|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28522C>T||||||
1	362895	.	A	G	61.86	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20A>G|||||4745|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28598A>G||||||
1	362904	.	T	G	79.5	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>G|||||4736|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28607T>G||||||
1	362905	.	T	G	4852.8	.	AC=124;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>G|||||4735|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28608T>G||||||
1	362907	.	G	C	1292.9	.	AC=57;ANN=C|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20G>C|||||4733|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28610G>C||||||
1	362924	.	T	A	26.27	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>A|||||4716|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28627T>A||||||
1	362930	.	T	G	10.72	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>G|||||4710|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28633T>G||||||
1	363084	.	G	A	23.8	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20G>A|||||4556|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28787G>A||||||
1	363101	.	A	G	194.84	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20A>G|||||4539|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28804A>G||||||
1	363111	.	T	C	66.7	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>C|||||4529|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+28814T>C||||||
1	363369	.	C	T	176.91	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20C>T|||||4271|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29072C>T||||||
1	363456	.	T	C	10.56	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>C|||||4184|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29159T>C||||||
1	363472	.	C	T	10.56	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20C>T|||||4168|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29175C>T||||||
1	363485	.	A	G	129.47	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20A>G|||||4155|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29188A>G||||||
1	363878	.	T	C	228.5	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>C|||||3762|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29581T>C||||||
1	364099	.	G	A	48.5	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20G>A|||||3541|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29802G>A||||||
1	364218	.	A	G	58.26	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20A>G|||||3422|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29921A>G||||||
1	364251	.	G	T	3065.88	.	AC=163;ANN=T|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20G>T|||||3389|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29954G>T||||||
1	364272	.	C	A	97.58	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20C>A|||||3368|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29975C>A||||||
1	364277	.	C	T	361.74	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20C>T|||||3363|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+29980C>T||||||
1	364299	.	A	G	191.42	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20A>G|||||3341|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+30002A>G||||||
1	364345	.	A	G	38.36	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20A>G|||||3295|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+30048A>G||||||
1	364528	.	T	C	23.14	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>C|||||3112|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+30231T>C||||||
1	365316	.	G	A	32.8	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20G>A|||||2324|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+31019G>A||||||
1	365363	.	C	A	63.45	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20C>A|||||2277|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+31066C>A||||||
1	365403	.	C	G	11.97	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20C>G|||||2237|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+31106C>G||||||
1	365889	.	A	G	62.8	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20A>G|||||1751|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+31592A>G||||||
1	366842	.	T	G	6.41	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|OR4F29|ENSG00000235249|transcript|ENST00000426406|protein_coding||c.-20T>G|||||798|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+32545T>G||||||
1	380258	.	C	T	70.12	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP7|ENSG00000269732|transcript|ENST00000437905|processed_pseudogene||n.-1G>A|||||791|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+45961C>T||||||
1	383078	.	C	T	90.69	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP7|ENSG00000269732|transcript|ENST00000437905|processed_pseudogene||n.-1G>A|||||3611|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+48781C>T||||||
1	383428	.	G	T	6.41	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP7|ENSG00000269732|transcript|ENST00000437905|processed_pseudogene||n.-1C>A|||||3961|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+49131G>T||||||
1	384434	.	C	T	52.63	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP7|ENSG00000269732|transcript|ENST00000437905|processed_pseudogene||n.-1G>A|||||4967|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50137C>T||||||
1	384550	.	C	G	57.84	.	AC=7;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50253C>G||||||
1	384602	.	C	T	109.64	.	AC=9;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50305C>T||||||
1	384636	.	C	T	15.65	.	AC=3;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50339C>T||||||
1	384653	.	C	G	158.43	.	AC=15;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50356C>G||||||
1	384679	.	C	T	76.71	.	AC=6;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50382C>T||||||
1	384704	.	C	G	35.43	.	AC=5;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50407C>G||||||
1	384730	.	C	G	17.45	.	AC=3;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50433C>G||||||
1	384790	.	C	T	19.5	.	AC=3;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50493C>T||||||
1	385053	rs113653250	A	C	6557.68	.	AC=264;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+50756A>C||||||
1	385988	.	C	T	5.08	.	AC=1;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.169+51691C>T||||||
1	397395	.	T	C	28.18	.	AC=4;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-42072T>C||||||
1	398188	.	A	C	32.77	.	AC=4;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-41279A>C||||||
1	398365	.	G	T	81.3	.	AC=8;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-41102G>T||||||
1	399368	.	G	T	6.41	.	AC=1;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-40099G>T||||||
1	401122	.	G	C	71.03	.	AC=7;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-38345G>C||||||
1	401310	.	T	C	258.25	.	AC=18;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-38157T>C||||||
1	401373	.	C	T	627.0	.	AC=40;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-38094C>T||||||
1	401602	.	A	C	175.62	.	AC=15;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-37865A>C||||||
1	404246	.	C	T	451.78	.	AC=31;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-35221C>T||||||
1	404259	.	T	C	22.33	.	AC=1;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-35208T>C||||||
1	404303	.	C	T	3177.38	.	AC=136;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-35164C>T||||||
1	404306	.	T	A	70.79	.	AC=7;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-35161T>A||||||
1	404409	.	T	G	611.22	.	AC=40;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-35058T>G||||||
1	404428	.	C	T	424.27	.	AC=24;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-35039C>T||||||
1	404577	.	G	A	1796.02	.	AC=67;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34890G>A||||||
1	404664	.	G	T	2508.46	.	AC=129;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34803G>T||||||
1	404672	.	G	A	4578.43	.	AC=168;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34795G>A||||||
1	404734	.	A	G	107.91	.	AC=11;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34733A>G||||||
1	404760	.	T	C	51.65	.	AC=8;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34707T>C||||||
1	404763	.	T	C	295.93	.	AC=23;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34704T>C||||||
1	404974	.	A	G	240.31	.	AC=14;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34493A>G||||||
1	404993	.	T	A	41.29	.	AC=4;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34474T>A||||||
1	405109	.	T	C	707.59	.	AC=39;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-34358T>C||||||
1	410309	.	C	T	6.41	.	AC=1;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-29158C>T||||||
1	413872	.	G	A	100.81	.	AC=7;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25595G>A||||||
1	413878	.	G	T	31.21	.	AC=4;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25589G>T||||||
1	414027	.	T	C	61.09	.	AC=7;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25440T>C||||||
1	414115	.	C	T	97.72	.	AC=8;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25352C>T||||||
1	414146	.	A	G	240.06	.	AC=30;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25321A>G||||||
1	414162	.	A	C	769.65	.	AC=58;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25305A>C||||||
1	414172	.	A	G	3173.69	.	AC=181;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25295A>G||||||
1	414173	.	A	G	134.23	.	AC=18;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-25294A>G||||||
1	414583	.	A	G	127.09	.	AC=12;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-24884A>G||||||
1	416202	.	G	T	187.3	.	AC=8;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-23265G>T||||||
1	416257	.	C	T	31.12	.	AC=2;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-23210C>T||||||
1	422397	.	C	A	153.6	.	AC=15;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-17070C>A||||||
1	422563	.	A	C	53.34	.	AC=7;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-16904A>C||||||
1	422719	.	C	A	69.81	.	AC=8;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-16748C>A||||||
1	422722	.	A	G	32.62	.	AC=7;ANN=G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-16745A>G||||||
1	422740	.	T	C	242.14	.	AC=21;ANN=C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-16727T>C||||||
1	422766	.	G	A	148.3	.	AC=15;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-16701G>A||||||
1	422799	.	G	A	14.76	.	AC=3;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-16668G>A||||||
1	425198	.	G	A	7.8	.	AC=1;ANN=A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-14269G>A||||||
1	425777	.	C	T	5.74	.	AC=1;ANN=T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA|1/2|n.170-13690C>T||||||
1	448074	.	G	A	9.82	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1G>A|||||2813|,A|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90C>T|||||2746|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413G>A|||||1919|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+1881G>A||||||
1	448513	.	C	G	56.73	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1C>G|||||2374|,G|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1C>G|||||4704|,G|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90G>C|||||2307|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413C>G|||||2358|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+2320C>G||||||
1	448879	.	G	A	151.73	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1G>A|||||2008|,A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1G>A|||||4338|,A|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90C>T|||||1941|,A|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607C>T|||||4754|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413G>A|||||2724|,A|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426C>T|||||4948|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+2686G>A||||||
1	449085	.	A	C	49.37	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1A>C|||||1802|,C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1A>C|||||4132|,C|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90T>G|||||1735|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607T>G|||||4548|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413A>C|||||2930|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426T>G|||||4742|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+2892A>C||||||
1	449104	.	G	A	9.01	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1G>A|||||1783|,A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1G>A|||||4113|,A|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90C>T|||||1716|,A|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607C>T|||||4529|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413G>A|||||2949|,A|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426C>T|||||4723|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+2911G>A||||||
1	449190	.	A	G	114.36	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1A>G|||||1697|,G|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1A>G|||||4027|,G|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90T>C|||||1630|,G|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607T>C|||||4443|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413A>G|||||3035|,G|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426T>C|||||4637|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+2997A>G||||||
1	449284	.	T	C	67.21	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1T>C|||||1603|,C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1T>C|||||3933|,C|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90A>G|||||1536|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607A>G|||||4349|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413T>C|||||3129|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426A>G|||||4543|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+3091T>C||||||
1	449721	.	C	T	5.08	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1C>T|||||1166|,T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1C>T|||||3496|,T|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90G>A|||||1099|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607G>A|||||3912|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413C>T|||||3566|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426G>A|||||4106|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.384+3528C>T||||||
1	449958	.	G	T	49.76	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1G>T|||||929|,T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1G>T|||||3259|,T|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90C>A|||||862|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607C>A|||||3675|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413G>T|||||3803|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426C>A|||||3869|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-3687G>T||||||
1	450379	.	C	T	127.57	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1C>T|||||508|,T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1C>T|||||2838|,T|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90G>A|||||441|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607G>A|||||3254|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413C>T|||||4224|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426G>A|||||3448|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-3266C>T||||||
1	450464	.	T	C	36.75	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1T>C|||||423|,C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1T>C|||||2753|,C|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90A>G|||||356|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607A>G|||||3169|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413T>C|||||4309|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426A>G|||||3363|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-3181T>C||||||
1	450473	.	C	T	145.51	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1C>T|||||414|,T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1C>T|||||2744|,T|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90G>A|||||347|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607G>A|||||3160|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413C>T|||||4318|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426G>A|||||3354|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-3172C>T||||||
1	450594	.	A	C	83.68	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1A>C|||||293|,C|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1A>C|||||2623|,C|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90T>G|||||226|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607T>G|||||3039|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413A>C|||||4439|,C|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426T>G|||||3233|,C|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-3051A>C||||||
1	450656	.	A	T	49.56	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1A>T|||||231|,T|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1A>T|||||2561|,T|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90T>A|||||164|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607T>A|||||2977|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413A>T|||||4501|,T|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426T>A|||||3171|,T|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-2989A>T||||||
1	450718	.	A	G	61.34	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.-1A>G|||||169|,G|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1A>G|||||2499|,G|downstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.*90T>C|||||102|,G|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607T>C|||||2915|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000455207|lincRNA||n.*413A>G|||||4563|,G|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426T>C|||||3109|,G|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-2927A>G||||||
1	451734	.	T	A	16.74	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL732372.1|ENSG00000256186|transcript|ENST00000540477|pseudogene||n.-1A>T|||||824|,A|upstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.-1T>A|||||1483|,A|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.*607A>T|||||1899|,A|downstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.*426A>T|||||2093|,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA|2/2|n.385-1911T>A||||||,A|intron_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA|1/1|n.200+648T>A||||||
1	456021	.	T	C	22.36	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1T>C|||||3635|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA||n.*462T>C|||||2299|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498T>C|||||2079|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406T>C|||||2073|,C|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.74-1855A>G||||||,C|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.87-1855A>G||||||
1	457095	.	A	G	149.88	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1A>G|||||2561|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA||n.*462A>G|||||3373|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498A>G|||||3153|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406A>G|||||3147|,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.74-2929T>C||||||,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.87-2929T>C||||||
1	457108	.	T	G	162.26	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1T>G|||||2548|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA||n.*462T>G|||||3386|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498T>G|||||3166|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406T>G|||||3160|,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.74-2942A>C||||||,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.87-2942A>C||||||
1	457109	.	T	G	73.98	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1T>G|||||2547|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA||n.*462T>G|||||3387|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498T>G|||||3167|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406T>G|||||3161|,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.74-2943A>C||||||,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.87-2943A>C||||||
1	457405	.	C	T	18.45	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1C>T|||||2251|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA||n.*462C>T|||||3683|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498C>T|||||3463|,T|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406C>T|||||3457|,T|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+3003G>A||||||,T|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+2975G>A||||||
1	458692	.	T	C	134.92	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1T>C|||||964|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000440163|lincRNA||n.*462T>C|||||4970|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498T>C|||||4750|,C|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406T>C|||||4744|,C|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1716A>G||||||,C|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1688A>G||||||
1	458764	.	C	G	52.36	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1C>G|||||892|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498C>G|||||4822|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406C>G|||||4816|,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1644G>C||||||,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1616G>C||||||
1	458793	.	G	A	146.93	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1G>A|||||863|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498G>A|||||4851|,A|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406G>A|||||4845|,A|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1615C>T||||||,A|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1587C>T||||||
1	458841	.	A	G	17.18	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1A>G|||||815|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000453935|lincRNA||n.*498A>G|||||4899|,G|downstream_gene_variant|MODIFIER|RP4-669L17.10|ENSG00000237094|transcript|ENST00000431321|lincRNA||n.*406A>G|||||4893|,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1567T>C||||||,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1539T>C||||||
1	459075	.	G	A	32.08	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1G>A|||||581|,A|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1333C>T||||||,A|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1305C>T||||||
1	459234	.	C	T	31.53	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1C>T|||||422|,T|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1174G>A||||||,T|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1146G>A||||||
1	459252	.	A	G	189.35	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1A>G|||||404|,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1156T>C||||||,G|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1128T>C||||||
1	459316	.	C	T	29.15	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.-1C>T|||||340|,T|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+1092G>A||||||,T|intron_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/1|n.86+1064G>A||||||
1	460406	.	G	A	6.41	.	AC=1;ANN=A|splice_donor_variant&intron_variant|HIGH|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA|1/1|n.73+2C>T||||||,A|intron_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA|1/2|n.337+414G>A||||||,A|non_coding_exon_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA|1/2|n.60C>T||||||
1	463651	.	C	A	7.8	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000450983|lincRNA||n.-1G>T|||||3171|,A|upstream_gene_variant|MODIFIER|RP4-669L17.2|ENSG00000236601|transcript|ENST00000412666|lincRNA||n.-1G>T|||||3186|,A|downstream_gene_variant|MODIFIER|RP5-857K21.15|ENSG00000236743|transcript|ENST00000441866|lincRNA||n.*676C>A|||||1697|,A|intergenic_region|MODIFIER|RP5-857K21.15-RP4-669L17.1|ENSG00000236743-ENSG00000236679|intergenic_region|ENSG00000236743-ENSG00000236679|||||||||
1	521449	.	T	A	1431.89	.	AC=68;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1T>A|||||1560|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1T>A|||||1599|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.762A>T||||||
1	521487	.	G	C	42.74	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>C|||||1522|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>C|||||1561|,C|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.724C>G||||||
1	521578	.	G	A	907.78	.	AC=43;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||1431|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||1470|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.633C>T||||||
1	521584	.	G	A	53.94	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||1425|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||1464|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.627C>T||||||
1	521587	.	G	C	482.13	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>C|||||1422|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>C|||||1461|,C|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.624C>G||||||
1	521595	.	G	A	529.66	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||1414|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||1453|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.616C>T||||||
1	521602	.	C	T	17.86	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||1407|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||1446|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.609G>A||||||
1	521603	.	G	A	2662.46	.	AC=153;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||1406|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||1445|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.608C>T||||||
1	521651	.	C	T	338.37	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||1358|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||1397|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.560G>A||||||
1	521655	.	G	C	403.01	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>C|||||1354|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>C|||||1393|,C|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.556C>G||||||
1	521675	.	A	C	110.84	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1A>C|||||1334|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>C|||||1373|,C|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.536T>G||||||
1	521682	.	G	A	691.59	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||1327|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||1366|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|3/3|n.529C>T||||||
1	521944	.	C	A	205.83	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>A|||||1065|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>A|||||1104|,A|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/2|n.473-206G>T||||||
1	521947	.	G	A	71.98	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||1062|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||1101|,A|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/2|n.473-209C>T||||||
1	521973	rs3088262	A	G	146.81	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1A>G|||||1036|,G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>G|||||1075|,G|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/2|n.472+228T>C||||||
1	522085	.	C	T	71.84	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||924|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||963|,T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/2|n.472+116G>A||||||
1	522164	.	C	A	127.62	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>A|||||845|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>A|||||884|,A|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/2|n.472+37G>T||||||
1	522173	.	T	C	99.2	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1T>C|||||836|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1T>C|||||875|,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/2|n.472+28A>G||||||
1	522224	.	G	A	180.88	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||785|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||824|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/3|n.449C>T||||||
1	522256	.	C	T	65.31	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||753|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||792|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/3|n.417G>A||||||
1	522273	.	C	T	62.86	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||736|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||775|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|2/3|n.400G>A||||||
1	522366	.	C	T	836.58	.	AC=41;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||643|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||682|,T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-31G>A||||||
1	522462	.	A	G	349.27	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1A>G|||||547|,G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>G|||||586|,G|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-127T>C||||||
1	522476	.	A	T	99.98	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1A>T|||||533|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>T|||||572|,T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-141T>A||||||
1	522482	.	G	C	178.54	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>C|||||527|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>C|||||566|,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-147C>G||||||
1	522537	.	A	C	286.71	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1A>C|||||472|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>C|||||511|,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-202T>G||||||
1	522540	.	T	C	95.1	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1T>C|||||469|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1T>C|||||508|,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-205A>G||||||
1	522583	.	A	G	2401.0	.	AC=53;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1A>G|||||426|,G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>G|||||465|,G|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-248T>C||||||
1	522733	.	C	T	2165.47	.	AC=54;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||276|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||315|,T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-398G>A||||||
1	522734	.	G	A	45.31	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||275|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||314|,A|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-399C>T||||||
1	522766	.	G	A	220.33	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>A|||||243|,A|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>A|||||282|,A|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-431C>T||||||
1	522773	.	T	C	7.26	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1T>C|||||236|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1T>C|||||275|,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-438A>G||||||
1	522823	.	G	C	612.88	.	AC=36;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1G>C|||||186|,C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1G>C|||||225|,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.338-488C>G||||||
1	522962	.	C	T	18.2	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1C>T|||||47|,T|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1C>T|||||86|,T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+535G>A||||||
1	522974	.	A	G	739.28	.	AC=35;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.-1A>G|||||35|,G|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>G|||||74|,G|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+523T>C||||||
1	523014	.	A	C	575.6	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.-1A>C|||||34|,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+483T>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/2|n.6A>C||||||
1	523083	.	T	C	191.19	.	AC=16;ANN=C|splice_donor_variant&intron_variant|HIGH|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+414A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/2|n.36T>C||||||
1	523086	.	G	C	5.39	.	AC=1;ANN=C|splice_region_variant&intron_variant|LOW|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+5G>C||||||,C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+411C>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/2|n.39G>C||||||
1	523184	.	G	T	862.96	.	AC=35;ANN=T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+313C>A||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+103G>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+75G>T||||||
1	523391	.	C	T	263.32	.	AC=23;ANN=T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+106G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+310C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+282C>T||||||
1	523402	.	A	G	223.75	.	AC=23;ANN=G|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+95T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+321A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+293A>G||||||
1	523417	.	G	A	284.47	.	AC=27;ANN=A|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+80C>T||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+336G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+308G>A||||||
1	523438	.	C	T	87.7	.	AC=15;ANN=T|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+59G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+357C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+329C>T||||||
1	523471	.	T	C	780.99	.	AC=65;ANN=C|intron_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/2|n.337+26A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+390T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+362T>C||||||
1	523684	.	C	T	231.16	.	AC=15;ANN=T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+603C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+575C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/3|n.150G>A||||||
1	523791	.	C	A	108.09	.	AC=14;ANN=A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+710C>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+682C>A||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/3|n.43G>T||||||
1	523804	.	C	T	41.25	.	AC=1;ANN=T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+723C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+695C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/3|n.30G>A||||||
1	523822	.	T	A	519.25	.	AC=32;ANN=A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+741T>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+713T>A||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/3|n.12A>T||||||
1	523823	.	G	T	54.3	.	AC=4;ANN=T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+742G>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+714G>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/3|n.11C>A||||||
1	523825	.	C	T	701.42	.	AC=41;ANN=T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+744C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+716C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA|1/3|n.9G>A||||||
1	524130	.	G	A	73.78	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||297|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1049G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1021G>A||||||
1	524177	.	T	C	1762.15	.	AC=76;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||344|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1096T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1068T>C||||||
1	524200	.	A	G	16.56	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||367|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1119A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1091A>G||||||
1	524237	.	C	T	48.7	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||404|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1156C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1128C>T||||||
1	524286	.	G	A	15.19	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||453|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1205G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1177G>A||||||
1	524695	.	T	C	91.22	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||862|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1614T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1586T>C||||||
1	524724	.	C	G	132.79	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>C|||||891|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1643C>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1615C>G||||||
1	524796	.	G	A	309.73	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||963|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1715G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1687G>A||||||
1	524856	.	A	C	181.52	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>G|||||1023|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>G|||||4983|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>G|||||4977|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1775A>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1747A>C||||||
1	524968	.	A	G	115.23	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||1135|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||4871|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||4865|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1887A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1859A>G||||||
1	525001	.	A	T	424.92	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>A|||||1168|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>A|||||4838|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>A|||||4832|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1920A>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1892A>T||||||
1	525037	.	G	T	77.17	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>A|||||1204|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>A|||||4802|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>A|||||4796|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+1956G>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1928G>T||||||
1	525108	.	G	C	19.81	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>G|||||1275|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>G|||||4731|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>G|||||4725|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2027G>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+1999G>C||||||
1	525135	.	A	G	149.63	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||1302|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||4704|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||4698|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2054A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2026A>G||||||
1	525215	.	G	T	47.09	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>A|||||1382|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>A|||||4624|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>A|||||4618|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2134G>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2106G>T||||||
1	525272	.	A	G	106.62	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||1439|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||4567|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||4561|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2191A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2163A>G||||||
1	525344	.	T	C	73.28	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||1511|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||4495|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||4489|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2263T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2235T>C||||||
1	525418	.	C	A	218.41	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>T|||||1585|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>T|||||4421|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>T|||||4415|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2337C>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2309C>A||||||
1	525468	.	T	C	53.65	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||1635|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||4371|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||4365|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2387T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2359T>C||||||
1	525597	.	C	A	275.98	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>T|||||1764|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>T|||||4242|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>T|||||4236|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2516C>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2488C>A||||||
1	525623	.	G	A	44.15	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||1790|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||4216|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||4210|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2542G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2514G>A||||||
1	525651	.	G	A	185.61	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||1818|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||4188|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||4182|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2570G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2542G>A||||||
1	525698	rs2808353	A	G	83.66	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||1865|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||4141|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||4135|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2617A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2589A>G||||||
1	525758	.	T	C	508.27	.	AC=35;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||1925|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||4081|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||4075|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2677T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2649T>C||||||
1	525776	.	C	T	76.44	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||1943|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||4063|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||4057|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2695C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2667C>T||||||
1	525977	.	G	A	70.98	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||2144|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||3862|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||3856|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2896G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2868G>A||||||
1	525990	.	C	T	44.9	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||2157|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||3849|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||3843|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2909C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2881C>T||||||
1	526057	.	T	C	144.58	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||2224|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||3782|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||3776|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+2976T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+2948T>C||||||
1	526193	.	C	T	79.34	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||2360|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||3646|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||3640|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+3112C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+3084C>T||||||
1	526246	.	G	A	8.44	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||2413|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||3593|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||3587|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.73+3165G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.62+3137G>A||||||
1	526411	.	T	C	159.31	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||2578|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||3428|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||3422|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3204T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3204T>C||||||
1	526420	.	A	C	961.27	.	AC=40;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>G|||||2587|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>G|||||3419|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>G|||||3413|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3195A>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3195A>C||||||
1	526451	.	G	A	173.35	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||2618|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||3388|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||3382|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3164G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3164G>A||||||
1	526532	.	C	T	326.57	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||2699|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||3307|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||3301|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3083C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3083C>T||||||
1	526534	.	G	T	715.16	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>A|||||2701|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>A|||||3305|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>A|||||3299|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3081G>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3081G>T||||||
1	526549	.	G	T	828.51	.	AC=45;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>A|||||2716|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>A|||||3290|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>A|||||3284|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3066G>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3066G>T||||||
1	526561	.	T	G	1333.61	.	AC=46;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>C|||||2728|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>C|||||3278|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>C|||||3272|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3054T>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3054T>G||||||
1	526567	.	C	T	179.79	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||2734|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||3272|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||3266|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3048C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3048C>T||||||
1	526579	.	C	A	593.34	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>T|||||2746|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>T|||||3260|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>T|||||3254|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3036C>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3036C>A||||||
1	526598	.	T	C	186.57	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||2765|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||3241|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||3235|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-3017T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-3017T>C||||||
1	526622	.	C	T	2200.68	.	AC=96;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||2789|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||3217|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||3211|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2993C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2993C>T||||||
1	526692	.	C	T	443.35	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||2859|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||3147|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||3141|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2923C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2923C>T||||||
1	526735	.	C	T	100.24	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||2902|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||3104|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||3098|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2880C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2880C>T||||||
1	526736	rs28863004	C	G	5573.09	.	AC=101;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>C|||||2903|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>C|||||3103|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>C|||||3097|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2879C>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2879C>G||||||
1	526771	.	G	C	214.92	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>G|||||2938|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>G|||||3068|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>G|||||3062|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2844G>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2844G>C||||||
1	526793	rs111822079	A	G	567.31	.	AC=43;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||2960|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||3046|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||3040|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2822A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2822A>G||||||
1	526832	.	G	C	291.64	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>G|||||2999|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>G|||||3007|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>G|||||3001|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2783G>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2783G>C||||||
1	526834	.	G	A	11.17	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||3001|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||3005|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||2999|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2781G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2781G>A||||||
1	526840	rs60396226	T	C	2106.48	.	AC=113;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||3007|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||2999|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||2993|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2775T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2775T>C||||||
1	526843	rs12354290	G	A	288.54	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||3010|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||2996|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||2990|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2772G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2772G>A||||||
1	526858	.	T	G	542.2	.	AC=42;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>C|||||3025|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>C|||||2981|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>C|||||2975|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2757T>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2757T>G||||||
1	526889	.	C	T	51.85	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||3056|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||2950|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||2944|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2726C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2726C>T||||||
1	526911	.	G	A	154.3	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||3078|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||2928|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||2922|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2704G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2704G>A||||||
1	526921	.	T	C	8.41	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||3088|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||2918|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||2912|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2694T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2694T>C||||||
1	526930	.	C	T	34.66	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||3097|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||2909|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||2903|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2685C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2685C>T||||||
1	526970	rs60791385	T	C	432.18	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||3137|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||2869|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||2863|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2645T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2645T>C||||||
1	527038	.	C	T	484.44	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||3205|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||2801|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||2795|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2577C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2577C>T||||||
1	527108	rs61209377	T	C	50.76	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||3275|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||2731|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||2725|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2507T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2507T>C||||||
1	527149	.	T	G	103.06	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>C|||||3316|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>C|||||2690|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>C|||||2684|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2466T>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2466T>G||||||
1	527157	.	A	G	352.02	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||3324|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||2682|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||2676|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2458A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2458A>G||||||
1	527186	rs111227194	A	G	1676.0	.	AC=63;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||3353|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||2653|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||2647|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2429A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2429A>G||||||
1	527202	.	A	G	163.4	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||3369|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||2637|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||2631|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2413A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2413A>G||||||
1	527207	rs112901516	A	G	1473.65	.	AC=63;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||3374|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||2632|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||2626|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2408A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2408A>G||||||
1	527219	.	G	A	369.32	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||3386|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||2620|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||2614|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2396G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2396G>A||||||
1	527238	.	A	G	39.33	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||3405|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||2601|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||2595|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2377A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2377A>G||||||
1	527286	.	C	T	157.89	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||3453|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||2553|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||2547|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2329C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2329C>T||||||
1	527297	.	G	A	224.51	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||3464|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||2542|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||2536|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2318G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2318G>A||||||
1	527488	.	C	A	96.7	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>T|||||3655|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>T|||||2351|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>T|||||2345|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-2127C>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-2127C>A||||||
1	527760	.	A	G	242.83	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||3927|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||2079|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||2073|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1855A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1855A>G||||||
1	527970	.	G	C	119.69	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>G|||||4137|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>G|||||1869|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>G|||||1863|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1645G>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1645G>C||||||
1	528097	.	C	T	333.33	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||4264|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||1742|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||1736|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1518C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1518C>T||||||
1	528151	.	G	T	505.59	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>A|||||4318|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>A|||||1688|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>A|||||1682|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1464G>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1464G>T||||||
1	528177	.	C	T	44.22	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>A|||||4344|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||1662|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||1656|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1438C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1438C>T||||||
1	528361	.	T	C	419.37	.	AC=29;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||4528|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||1478|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||1472|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1254T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1254T>C||||||
1	528435	.	G	A	440.46	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>T|||||4602|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||1404|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||1398|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1180G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1180G>A||||||
1	528459	.	T	C	66.27	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>G|||||4626|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||1380|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||1374|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1156T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1156T>C||||||
1	528484	.	A	G	55.03	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1T>C|||||4651|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||1355|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||1349|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1131A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1131A>G||||||
1	528503	.	T	G	159.98	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1A>C|||||4670|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>C|||||1336|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>C|||||1330|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-1112T>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-1112T>G||||||
1	528637	.	C	G	44.39	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1G>C|||||4804|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>C|||||1202|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>C|||||1196|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-978C>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-978C>G||||||
1	528796	.	G	C	463.68	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.1|ENSG00000231709|transcript|ENST00000417636|lincRNA||n.-1C>G|||||4963|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>G|||||1043|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>G|||||1037|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-819G>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-819G>C||||||
1	528851	.	G	A	313.73	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||988|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||982|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-764G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-764G>A||||||
1	528958	.	T	C	235.37	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||881|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||875|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-657T>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-657T>C||||||
1	529011	.	G	A	22.93	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||828|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||822|,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-604G>A||||||,A|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-604G>A||||||
1	529077	.	A	G	206.08	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>C|||||762|,G|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>C|||||756|,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-538A>G||||||,G|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-538A>G||||||
1	529130	.	C	T	58.77	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||709|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||703|,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-485C>T||||||,T|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-485C>T||||||
1	529597	.	G	C	29.78	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>G|||||242|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>G|||||236|,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|1/1|n.74-18G>C||||||,C|intron_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|1/1|n.63-18G>C||||||
1	529622	.	T	C	97.72	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498A>G|||||217|,C|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439A>G|||||211|,C|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.81T>C||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|2/2|n.70T>C||||||
1	529782	.	C	T	4778.68	.	AC=91;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||57|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||51|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.241C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|2/2|n.230C>T||||||
1	529807	.	A	T	428.45	.	AC=25;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498T>A|||||32|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439T>A|||||26|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.266A>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|2/2|n.255A>T||||||
1	529821	.	C	T	39.95	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498G>A|||||18|,T|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439G>A|||||12|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.280C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|2/2|n.269C>T||||||
1	529829	.	G	A	172.2	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||10|,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.*439C>T|||||4|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.288G>A||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|2/2|n.277G>A||||||
1	529834	.	G	A	1073.16	.	AC=46;ANN=A|splice_region_variant&non_coding_exon_variant|LOW|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|2/2|n.438C>T||||||,A|downstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.*498C>T|||||5|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.293G>A||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|2/2|n.282G>A||||||
1	529937	.	A	C	51.79	.	AC=9;ANN=C|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.396A>C||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|2/2|n.400T>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA|2/2|n.385A>C||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|2/2|n.335T>G||||||
1	530018	.	G	A	1062.92	.	AC=46;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||64|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.477G>A||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|2/2|n.319C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|2/2|n.254C>T||||||
1	530031	.	C	T	181.65	.	AC=17;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||77|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.490C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|2/2|n.306G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|2/2|n.241G>A||||||
1	530055	.	C	T	414.98	.	AC=24;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||101|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.514C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|2/2|n.282G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|2/2|n.217G>A||||||
1	530065	.	C	T	559.64	.	AC=33;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||111|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.524C>T||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|2/2|n.272G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|2/2|n.207G>A||||||
1	530104	.	T	G	388.02	.	AC=26;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>G|||||150|,G|non_coding_exon_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA|2/2|n.563T>G||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|2/2|n.233A>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|2/2|n.168A>C||||||
1	530240	.	T	C	2358.42	.	AC=88;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||92|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||286|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-104A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|1/1|n.136-104A>G||||||
1	530272	.	T	C	1151.77	.	AC=49;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||124|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||318|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-136A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|1/1|n.136-136A>G||||||
1	530347	.	A	G	2933.73	.	AC=58;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||199|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||393|,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-211T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|1/1|n.135+116T>C||||||
1	530353	.	A	G	2476.24	.	AC=52;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||205|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||399|,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-217T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|1/1|n.135+110T>C||||||
1	530392	.	G	A	2717.76	.	AC=76;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||244|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||438|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-256C>T||||||,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|1/1|n.135+71C>T||||||
1	530416	.	G	C	82.37	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>C|||||268|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>C|||||462|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-280C>G||||||,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|1/1|n.135+47C>G||||||
1	530576	.	G	A	34.25	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||428|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||622|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-440C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA|1/2|n.22C>T||||||
1	530639	.	G	A	157.37	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||42|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||491|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||685|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-503C>T||||||
1	530656	.	C	A	507.01	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>T|||||59|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>A|||||508|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>A|||||702|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-520G>T||||||
1	530694	.	G	T	90.43	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>A|||||97|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>T|||||546|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>T|||||740|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-558C>A||||||
1	530767	.	G	T	1022.76	.	AC=50;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>A|||||170|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>T|||||619|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>T|||||813|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-631C>A||||||
1	530878	.	T	C	511.78	.	AC=34;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||281|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||730|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||924|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-742A>G||||||
1	530902	.	A	G	428.55	.	AC=36;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||305|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||754|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||948|,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-766T>C||||||
1	530917	.	C	T	251.17	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||320|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||769|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||963|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-781G>A||||||
1	531064	.	G	A	678.71	.	AC=40;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||467|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||916|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||1110|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-928C>T||||||
1	531175	.	G	A	523.41	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||578|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||1027|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||1221|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-1039C>T||||||
1	531236	.	T	C	122.74	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||639|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||1088|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||1282|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-1100A>G||||||
1	531251	.	T	C	81.02	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||654|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||1103|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||1297|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-1115A>G||||||
1	531294	.	C	A	52.55	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>T|||||697|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>A|||||1146|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>A|||||1340|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-1158G>T||||||
1	531349	.	A	C	24.75	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>G|||||752|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>C|||||1201|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>C|||||1395|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.201-1213T>G||||||
1	531664	.	C	T	611.4	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1067|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||1516|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||1710|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+1015G>A||||||
1	531667	.	C	T	82.87	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1070|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||1519|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||1713|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+1012G>A||||||
1	531745	.	A	G	794.29	.	AC=35;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||1148|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||1597|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||1791|,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+934T>C||||||
1	531762	.	T	A	48.87	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>T|||||1165|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>A|||||1614|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>A|||||1808|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+917A>T||||||
1	531856	.	C	T	81.79	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1259|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||1708|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||1902|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4960|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+823G>A||||||
1	531964	.	C	T	236.95	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1367|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||1816|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||2010|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4852|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+715G>A||||||
1	531987	.	A	T	40.09	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>A|||||1390|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>T|||||1839|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>T|||||2033|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>A|||||4829|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+692T>A||||||
1	532005	.	C	T	60.5	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1408|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||1857|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||2051|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4811|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+674G>A||||||
1	532009	.	T	C	7229.93	.	AC=76;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||1412|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||1861|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||2055|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||4807|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+670A>G||||||
1	532037	.	T	C	115.55	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||1440|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||1889|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||2083|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||4779|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+642A>G||||||
1	532051	.	A	C	5065.13	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>G|||||1454|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>C|||||1903|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>C|||||2097|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>G|||||4765|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+628T>G||||||
1	532080	.	T	C	14431.27	.	AC=198;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||1483|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||1932|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||2126|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||4736|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+599A>G||||||
1	532124	.	A	C	380.38	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>G|||||1527|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>C|||||1976|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>C|||||2170|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>G|||||4692|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+555T>G||||||
1	532127	.	C	T	230.96	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1530|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||1979|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||2173|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4689|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+552G>A||||||
1	532129	.	T	C	66.3	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||1532|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||1981|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||2175|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||4687|,C|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+550A>G||||||
1	532135	.	C	G	5.57	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>C|||||1538|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>G|||||1987|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>G|||||2181|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>C|||||4681|,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+544G>C||||||
1	532158	.	C	T	148.42	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1561|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||2010|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||2204|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4658|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+521G>A||||||
1	532412	.	C	T	151.14	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1815|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||2264|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||2458|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4404|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+267G>A||||||
1	532413	.	G	A	310.97	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||1816|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||2265|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||2459|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||4403|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+266C>T||||||
1	532439	.	T	A	30.1	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>T|||||1842|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>A|||||2291|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>A|||||2485|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>T|||||4377|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+240A>T||||||
1	532447	.	A	G	67.69	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||1850|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||2299|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||2493|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||4369|,G|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+232T>C||||||
1	532518	.	C	T	984.11	.	AC=55;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||1921|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||2370|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||2564|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4298|,T|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+161G>A||||||
1	532519	.	G	A	26.57	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||1922|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||2371|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||2565|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||4297|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+160C>T||||||
1	532559	.	G	A	148.13	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||1962|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||2411|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||2605|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||4257|,A|intron_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/1|n.200+120C>T||||||
1	532702	.	A	G	223.34	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||2105|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||2554|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||2748|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||4114|,G|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/2|n.177T>C||||||
1	532736	.	C	T	65.49	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||2139|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||2588|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||2782|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||4080|,T|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/2|n.143G>A||||||
1	532773	.	C	G	58.36	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>C|||||2176|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>G|||||2625|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>G|||||2819|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>C|||||4043|,G|non_coding_exon_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA|1/2|n.106G>C||||||
1	532929	.	T	C	988.97	.	AC=52;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||51|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||2332|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||2781|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||2975|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||3887|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	532949	.	T	C	90.53	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||71|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||2352|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||2801|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||2995|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||3867|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	532982	.	A	G	114.49	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||104|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||2385|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||2834|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||3028|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||3834|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533047	.	C	T	96.74	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||169|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||2450|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||2899|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||3093|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||3769|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533109	.	T	A	236.45	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>T|||||231|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>T|||||2512|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>A|||||2961|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>A|||||3155|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>T|||||3707|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533113	.	A	G	5147.54	.	AC=92;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||235|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||2516|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||2965|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||3159|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||3703|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533162	rs112369404	C	T	380.6	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||284|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||2565|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||3014|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||3208|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||3654|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533163	.	G	A	13.72	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||285|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2566|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3015|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3209|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3653|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533170	rs114617477	G	T	2177.4	.	AC=66;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>A|||||292|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>A|||||2573|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>T|||||3022|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>T|||||3216|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>A|||||3646|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533177	.	G	A	30.17	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||299|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2580|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3029|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3223|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3639|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533179	rs111501994	A	G	2134.92	.	AC=50;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||301|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||2582|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||3031|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||3225|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||3637|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533187	.	C	T	489.38	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||309|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||2590|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||3039|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||3233|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||3629|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533197	.	A	G	2410.91	.	AC=96;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||319|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||2600|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||3049|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||3243|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||3619|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533198	rs78497331	C	T	2597.93	.	AC=95;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||320|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||2601|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||3050|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||3244|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||3618|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533206	.	A	G	406.54	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||328|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||2609|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||3058|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||3252|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||3610|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533226	.	G	A	90.46	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||348|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2629|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3078|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3272|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3590|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533235	.	G	A	18.46	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||357|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2638|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3087|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3281|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3581|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533244	.	G	A	260.26	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||366|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2647|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3096|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3290|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3572|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533268	.	G	A	28.93	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||390|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2671|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3120|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3314|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3548|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533273	.	G	A	67.39	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||395|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2676|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3125|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3319|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3543|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533300	.	G	A	435.89	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||422|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2703|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3152|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3346|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3516|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533488	.	G	A	49.58	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||610|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||2891|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3340|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3534|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||3328|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533817	.	G	A	41.73	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||939|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3220|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3669|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||3863|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2999|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533958	.	G	A	416.53	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1080|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3361|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3810|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4004|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2858|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	533997	.	C	T	100.2	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1119|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3400|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||3849|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4043|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2819|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534005	.	G	A	643.92	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1127|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3408|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3857|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4051|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2811|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534099	.	G	A	519.54	.	AC=42;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1221|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3502|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||3951|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4145|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2717|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534104	.	A	G	914.31	.	AC=78;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||1226|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||3507|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||3956|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||4150|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||2712|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534115	.	T	C	370.53	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||1237|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||3518|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||3967|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||4161|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||2701|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534138	.	C	T	14.77	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1260|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3541|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||3990|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4184|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2678|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534166	.	T	G	1722.2	.	AC=104;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>C|||||1288|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>C|||||3569|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>G|||||4018|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>G|||||4212|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>C|||||2650|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534192	rs6680723	C	T	8520.39	.	AC=235;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1314|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3595|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4044|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4238|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2624|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534198	rs6680725	C	T	2669.16	.	AC=116;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1320|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3601|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4050|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4244|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2618|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534220	rs6702333	G	A	49.01	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1342|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3623|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||4072|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4266|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2596|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534229	.	G	A	240.55	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1351|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3632|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||4081|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4275|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2587|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534234	rs6680731	C	T	977.05	.	AC=39;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1356|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3637|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4086|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4280|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2582|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534242	.	C	T	8006.49	.	AC=122;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1364|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3645|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4094|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4288|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2574|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534247	.	C	T	230.11	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1369|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3650|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4099|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4293|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2569|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534259	rs6702342	G	T	2301.48	.	AC=83;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>A|||||1381|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>A|||||3662|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>T|||||4111|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>T|||||4305|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>A|||||2557|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534265	rs56781381	G	C	641.79	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>G|||||1387|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>G|||||3668|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>C|||||4117|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>C|||||4311|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>G|||||2551|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534284	.	T	C	149.62	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||1406|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||3687|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||4136|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||4330|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||2532|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534295	rs58567539	C	T	96.36	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1417|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||3698|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4147|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4341|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2521|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534297	.	T	C	59.84	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||1419|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||3700|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||4149|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||4343|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||2519|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534302	.	G	A	214.88	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1424|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3705|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||4154|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4348|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2514|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534321	.	G	A	753.94	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1443|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3724|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||4173|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4367|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2495|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534513	.	T	C	203.14	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||1635|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||3916|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||4365|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||4559|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||2303|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534540	.	G	T	97.73	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>A|||||1662|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>A|||||3943|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>T|||||4392|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>T|||||4586|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>A|||||2276|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534545	.	G	A	9123.36	.	AC=182;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1667|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3948|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||4397|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4591|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2271|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534546	rs6690870	T	C	556.7	.	AC=39;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||1668|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||3949|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||4398|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||4592|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||2270|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534547	.	G	A	2007.51	.	AC=58;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||1669|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||3950|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||4399|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402G>A|||||4593|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||2269|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534649	rs60383769	C	T	245.75	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1771|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||4052|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4501|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4695|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2167|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534668	.	T	C	107.62	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||1790|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||4071|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>C|||||4520|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402T>C|||||4714|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||2148|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534729	.	C	T	274.45	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||1851|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||4132|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4581|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4775|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||2087|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534897	.	A	G	111.68	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||2019|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||4300|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||4749|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402A>G|||||4943|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||1919|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534911	.	C	T	179.19	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2033|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||4314|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4763|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000450696|lincRNA||n.*402C>T|||||4957|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||1905|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534969	.	C	T	226.1	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2091|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||4372|,T|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607C>T|||||4821|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||1847|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	534984	.	A	G	160.15	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||2106|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>C|||||4387|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607A>G|||||4836|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||1832|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535072	.	G	C	42.29	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>G|||||2194|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>G|||||4475|,C|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>C|||||4924|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>G|||||1744|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535093	.	G	A	8.65	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||2215|,A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1C>T|||||4496|,A|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607G>A|||||4945|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||1723|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535131	.	T	G	105.54	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>C|||||2253|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>C|||||4534|,G|downstream_gene_variant|MODIFIER|RP5-857K21.2|ENSG00000235146|transcript|ENST00000423796|lincRNA||n.*607T>G|||||4983|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>C|||||1685|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535171	.	C	T	21.56	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2293|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||4574|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||1645|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535181	.	T	G	14.49	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>C|||||2303|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>C|||||4584|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>C|||||1635|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535235	.	T	C	252.75	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||2357|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||4638|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||1581|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535300	.	C	G	56.38	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>C|||||2422|,G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>C|||||4703|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>C|||||1516|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535317	.	C	T	82.29	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2439|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1G>A|||||4720|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||1499|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535359	.	A	T	24.45	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>A|||||2481|,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1T>A|||||4762|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>A|||||1457|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535437	.	T	C	37.49	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||2559|,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000440196|lincRNA||n.-1A>G|||||4840|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||1379|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535683	.	C	T	62.62	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2805|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||1133|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535691	.	T	C	165.77	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||2813|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||1125|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535695	.	C	T	54.74	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2817|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||1121|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535696	.	G	A	682.72	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||2818|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||1120|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535772	.	C	T	423.42	.	AC=41;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2894|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||1044|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535808	.	A	G	398.84	.	AC=41;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||2930|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||1008|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535818	.	C	T	295.03	.	AC=27;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2940|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||998|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535829	.	G	A	102.21	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||2951|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||987|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535858	.	C	T	109.72	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||2980|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||958|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535879	rs6687203	C	T	144.7	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3001|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||937|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535916	.	A	G	1556.24	.	AC=84;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||3038|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||900|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535952	rs6694742	T	C	348.32	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||3074|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||864|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535958	rs6687227	C	T	172.58	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3080|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||858|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535959	.	G	A	800.48	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||3081|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||857|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535964	.	G	C	148.95	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>G|||||3086|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>G|||||852|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535971	.	A	T	166.89	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>A|||||3093|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>A|||||845|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535976	.	C	T	163.19	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3098|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||840|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	535986	rs6687297	C	T	240.58	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3108|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||830|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536011	.	G	A	161.24	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||3133|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||805|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536016	.	C	T	148.86	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3138|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||800|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536021	rs6594020	T	A	149.86	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>T|||||3143|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>T|||||795|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536055	.	C	T	164.42	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3177|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||761|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536065	.	C	T	2082.98	.	AC=103;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3187|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||751|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536074	.	G	A	908.24	.	AC=61;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||3196|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||742|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536088	.	C	T	171.34	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3210|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||728|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536090	.	A	G	104.64	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||3212|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||726|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536091	.	T	C	24.12	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||3213|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||725|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536095	.	C	T	12604.55	.	AC=269;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3217|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||721|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536104	.	C	T	204.66	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3226|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||712|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536123	.	T	C	480.07	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||3245|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||693|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536134	rs2808303	C	T	2216.12	.	AC=118;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3256|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||682|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536153	rs6660590	G	A	1534.89	.	AC=73;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||3275|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||663|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536170	rs113835516	T	C	1774.67	.	AC=85;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||3292|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||646|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536185	.	G	C	149.71	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>G|||||3307|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>G|||||631|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536187	.	G	A	453.74	.	AC=38;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||3309|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||629|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536190	.	C	T	1767.44	.	AC=111;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3312|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413G>A|||||626|,T|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536202	.	T	C	123.06	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||3324|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||614|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536211	.	A	G	131.07	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||3333|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413T>C|||||605|,G|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536349	.	T	A	75.07	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>T|||||3471|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>T|||||467|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536366	.	T	C	300.17	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||3488|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>G|||||450|,C|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536414	.	T	A	474.22	.	AC=40;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>T|||||3536|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413A>T|||||402|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536673	.	G	A	348.52	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||3795|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.*413C>T|||||143|,A|intergenic_region|MODIFIER|RP5-857K21.3-RP5-857K21.4|ENSG00000239664-ENSG00000230021|intergenic_region|ENSG00000239664-ENSG00000230021|||||||||
1	536816	.	C	T	136.37	.	AC=16;ANN=T|splice_region_variant&non_coding_exon_variant|LOW|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|3/3|n.413G>A||||||,T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||3938|
1	536866	.	A	G	70.7	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||3988|,G|non_coding_exon_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|3/3|n.363T>C||||||
1	536924	.	G	A	1734.68	.	AC=99;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||4046|,A|non_coding_exon_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|3/3|n.305C>T||||||
1	536961	.	T	C	3044.24	.	AC=125;ANN=C|splice_region_variant&intron_variant|LOW|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-4A>G||||||,C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||4083|
1	536974	.	A	G	226.06	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||4096|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-17T>C||||||
1	536986	.	G	T	14007.22	.	AC=279;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>A|||||4108|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-29C>A||||||
1	536993	.	A	G	590.8	.	AC=46;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||4115|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-36T>C||||||
1	537047	.	C	T	242.81	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||4169|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-90G>A||||||
1	537053	.	G	A	1528.9	.	AC=92;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>T|||||4175|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-96C>T||||||
1	537092	.	T	C	26.43	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||4214|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-135A>G||||||
1	537203	.	C	T	104.86	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||4325|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-246G>A||||||
1	537205	.	C	T	18.36	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||4327|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-248G>A||||||
1	537341	.	C	A	293.26	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>T|||||4463|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-384G>T||||||
1	537342	.	C	A	326.31	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>T|||||4464|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-385G>T||||||
1	537355	.	T	A	130.69	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>T|||||4477|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-398A>T||||||
1	537447	.	A	G	452.0	.	AC=43;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||4569|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-490T>C||||||
1	537468	.	G	T	1217.76	.	AC=86;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>A|||||4590|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-511C>A||||||
1	537487	.	C	T	2816.42	.	AC=143;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||4609|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-530G>A||||||
1	537536	.	C	G	641.91	.	AC=53;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>C|||||4658|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-579G>C||||||
1	537537	.	A	G	817.02	.	AC=55;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1T>C|||||4659|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-580T>C||||||
1	537589	.	T	C	779.54	.	AC=56;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||4711|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-632A>G||||||
1	537628	.	T	C	66.05	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||4750|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-671A>G||||||
1	537678	.	T	C	805.06	.	AC=63;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||4800|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-721A>G||||||
1	537680	rs12184252	G	T	2128.72	.	AC=115;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1C>A|||||4802|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-723C>A||||||
1	537704	.	T	C	42.34	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1A>G|||||4826|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-747A>G||||||
1	537707	.	C	T	37.58	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.3|ENSG00000239664|transcript|ENST00000357876|lincRNA||n.-1G>A|||||4829|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-750G>A||||||
1	538049	.	A	G	24.55	.	AC=4;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1092T>C||||||
1	538205	.	T	C	126.71	.	AC=9;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1248A>G||||||
1	538293	.	G	T	9.61	.	AC=2;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1336C>A||||||
1	538295	.	G	A	48.87	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1338C>T||||||
1	538317	.	T	G	76.97	.	AC=8;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1360A>C||||||
1	538378	.	T	C	26.11	.	AC=6;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1421A>G||||||
1	538475	.	A	G	40.61	.	AC=5;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1518T>C||||||
1	538603	.	A	G	311.59	.	AC=23;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-1646T>C||||||
1	539028	.	C	T	17.84	.	AC=6;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-2071G>A||||||
1	539058	.	C	T	214.51	.	AC=14;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-2101G>A||||||
1	539204	.	G	T	8.43	.	AC=2;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-2247C>A||||||
1	539223	.	A	G	74.13	.	AC=12;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-2266T>C||||||
1	539385	.	T	C	36.29	.	AC=6;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-2428A>G||||||
1	539911	.	T	C	219.76	.	AC=19;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.272-2954A>G||||||
1	540151	.	G	C	72.66	.	AC=5;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+3184C>G||||||
1	540246	.	T	G	789.92	.	AC=68;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+3089A>C||||||
1	540304	.	G	C	81.86	.	AC=8;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+3031C>G||||||
1	540426	.	T	C	220.54	.	AC=16;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2909A>G||||||
1	540613	.	G	A	269.78	.	AC=28;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2722C>T||||||
1	540643	.	C	T	72.23	.	AC=8;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2692G>A||||||
1	540723	.	A	G	197.21	.	AC=20;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2612T>C||||||
1	540894	.	A	G	19.86	.	AC=6;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2441T>C||||||
1	540906	.	A	G	14.7	.	AC=7;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2429T>C||||||
1	540975	rs80246094	G	A	1789.29	.	AC=92;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2360C>T||||||
1	541036	.	T	A	81.74	.	AC=8;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2299A>T||||||
1	541052	.	T	C	401.88	.	AC=36;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+2283A>G||||||
1	541350	.	T	C	56.76	.	AC=10;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1985A>G||||||
1	541418	.	G	A	28.15	.	AC=4;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1917C>T||||||
1	541567	.	G	T	1930.33	.	AC=60;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1768C>A||||||
1	541601	.	G	A	44.75	.	AC=7;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1734C>T||||||
1	541607	.	G	C	31.45	.	AC=6;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1728C>G||||||
1	541702	.	T	A	271.72	.	AC=20;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1633A>T||||||
1	541769	.	A	G	1012.63	.	AC=46;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1566T>C||||||
1	541850	.	A	G	8.44	.	AC=4;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1485T>C||||||
1	541892	.	T	C	52.15	.	AC=7;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1443A>G||||||
1	542011	.	T	C	118.75	.	AC=11;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1324A>G||||||
1	542099	.	G	T	79.75	.	AC=9;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1236C>A||||||
1	542170	.	T	C	9.81	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+1165A>G||||||
1	542550	.	C	T	135.17	.	AC=14;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+785G>A||||||
1	542759	.	G	A	1152.34	.	AC=50;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+576C>T||||||
1	543054	.	C	G	14.82	.	AC=5;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|2/2|n.271+281G>C||||||
1	544354	.	G	C	45.98	.	AC=8;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-918C>G||||||
1	544395	.	G	A	332.51	.	AC=29;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-959C>T||||||
1	544481	.	T	A	6.77	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-1045A>T||||||
1	544523	.	T	C	60.48	.	AC=13;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-1087A>G||||||
1	544775	.	G	A	67.92	.	AC=9;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-1339C>T||||||
1	544778	rs2792865	G	A	10.25	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-1342C>T||||||
1	544787	.	G	C	562.16	.	AC=42;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-1351C>G||||||
1	544815	.	G	A	94.86	.	AC=10;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-1379C>T||||||
1	545612	.	T	A	28.13	.	AC=4;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-2176A>T||||||
1	545925	.	T	C	12.84	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-2489A>G||||||
1	546223	.	C	T	155.68	.	AC=23;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-2787G>A||||||
1	546312	.	C	T	365.68	.	AC=26;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-2876G>A||||||
1	546431	.	T	C	10.54	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-2995A>G||||||
1	546557	.	C	T	92.05	.	AC=4;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3121G>A||||||
1	546647	.	G	A	964.99	.	AC=52;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3211C>T||||||
1	546649	.	G	A	11.98	.	AC=2;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3213C>T||||||
1	546697	rs12025928	A	G	14373.89	.	AC=433;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3261T>C||||||
1	546706	.	T	G	259.11	.	AC=24;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3270A>C||||||
1	546709	rs111411573	G	A	34.92	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3273C>T||||||
1	546719	.	A	G	202.94	.	AC=26;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3283T>C||||||
1	546738	.	G	A	922.41	.	AC=45;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3302C>T||||||
1	546739	rs112572037	T	C	847.57	.	AC=37;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3303A>G||||||
1	546802	rs113633859	G	C	30822.3	.	AC=263;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3366C>G||||||
1	546803	.	G	A	810.75	.	AC=41;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3367C>T||||||
1	546805	rs61769283	T	C	8175.76	.	AC=145;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3369A>G||||||
1	546836	.	C	T	8409.7	.	AC=116;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3400G>A||||||
1	546842	.	G	A	1752.83	.	AC=65;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3406C>T||||||
1	546925	rs9438486	G	A	13633.86	.	AC=227;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3489C>T||||||
1	546952	rs9438487	T	C	33042.25	.	AC=332;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3516A>G||||||
1	546965	.	G	A	2174.03	.	AC=86;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3529C>T||||||
1	546985	.	G	A	466.54	.	AC=25;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3549C>T||||||
1	547042	rs9438489	C	T	677.53	.	AC=47;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3606G>A||||||
1	547133	rs75048165	G	A	189.61	.	AC=20;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3697C>T||||||
1	547237	rs74914204	G	A	738.0	.	AC=46;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3801C>T||||||
1	547354	.	C	T	1988.4	.	AC=102;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-3918G>A||||||
1	547445	.	G	A	430.75	.	AC=36;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4009C>T||||||
1	547458	.	C	T	753.63	.	AC=58;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4022G>A||||||
1	547484	.	C	T	497.69	.	AC=39;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4048G>A||||||
1	547559	.	T	G	233.25	.	AC=19;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4123A>C||||||
1	547562	.	C	T	482.51	.	AC=37;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4126G>A||||||
1	547564	.	A	C	119.13	.	AC=18;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4128T>G||||||
1	547576	.	T	C	10.95	.	AC=6;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4140A>G||||||
1	547589	.	G	A	1677.16	.	AC=78;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4153C>T||||||
1	547608	.	C	G	160.19	.	AC=16;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4172G>C||||||
1	547651	.	G	A	158.05	.	AC=20;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4215C>T||||||
1	547664	.	C	T	559.65	.	AC=45;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4228G>A||||||
1	547691	.	G	A	367.89	.	AC=43;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4255C>T||||||
1	547753	rs9326617	G	A	6268.25	.	AC=153;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4317C>T||||||
1	547766	.	T	C	99.89	.	AC=16;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4330A>G||||||
1	547873	.	T	C	161.97	.	AC=19;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4437A>G||||||
1	547885	.	G	A	23.26	.	AC=2;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4449C>T||||||
1	547924	.	C	A	37.99	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4488G>T||||||
1	547925	.	C	T	78.96	.	AC=10;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4489G>A||||||
1	547931	.	C	T	53.2	.	AC=8;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4495G>A||||||
1	547941	.	G	T	86.56	.	AC=11;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4505C>A||||||
1	548202	.	C	T	20.4	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-4766G>A||||||
1	548491	.	C	T	122.02	.	AC=10;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-5055G>A||||||
1	548716	.	G	C	33.26	.	AC=4;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-5280C>G||||||
1	548762	.	G	A	19.36	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-5326C>T||||||
1	549548	.	T	G	93.43	.	AC=1;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-6112A>C||||||
1	549903	.	A	G	12.54	.	AC=3;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-6467T>C||||||
1	551528	.	C	T	15.81	.	AC=1;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-8092G>A||||||
1	551623	.	T	C	84.11	.	AC=9;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-8187A>G||||||
1	552107	.	A	G	29.56	.	AC=4;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-8671T>C||||||
1	552232	.	G	A	24.01	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-8796C>T||||||
1	553132	.	C	T	17.65	.	AC=4;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-9696G>A||||||
1	553178	.	C	T	35.71	.	AC=5;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-9742G>A||||||
1	553345	.	T	C	95.51	.	AC=12;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-9909A>G||||||
1	553346	.	C	G	49.52	.	AC=1;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-9910G>C||||||
1	553725	.	C	T	1386.77	.	AC=63;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-10289G>A||||||
1	553742	.	G	A	1148.19	.	AC=74;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-10306C>T||||||
1	553847	.	C	T	36.23	.	AC=2;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-10411G>A||||||
1	553983	.	G	A	86.32	.	AC=8;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-10547C>T||||||
1	553993	.	G	A	51.89	.	AC=2;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-10557C>T||||||
1	554140	.	C	T	119.28	.	AC=18;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-10704G>A||||||
1	554428	.	G	A	70.3	.	AC=12;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-10992C>T||||||
1	554495	.	T	C	97.2	.	AC=10;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11059A>G||||||
1	554593	.	G	A	123.38	.	AC=12;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11157C>T||||||
1	554662	.	A	C	314.03	.	AC=34;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11226T>G||||||
1	554735	.	G	A	153.48	.	AC=21;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11299C>T||||||
1	554797	.	C	T	211.42	.	AC=27;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11361G>A||||||
1	554807	rs78478702	C	T	84.24	.	AC=12;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11371G>A||||||
1	554808	rs78894760	G	A	1132.58	.	AC=95;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11372C>T||||||
1	554850	.	A	T	74.96	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11414T>A||||||
1	554867	.	T	G	198.37	.	AC=19;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11431A>C||||||
1	555165	.	T	G	289.58	.	AC=31;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-11729A>C||||||
1	555555	.	G	C	140.41	.	AC=12;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-12119C>G||||||
1	555561	.	C	T	18.76	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-12125G>A||||||
1	555660	.	G	A	237.78	.	AC=14;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-12224C>T||||||
1	555921	.	A	C	32.74	.	AC=4;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-12485T>G||||||
1	555925	.	C	T	76.46	.	AC=8;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-12489G>A||||||
1	555964	.	C	T	21.14	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-12528G>A||||||
1	556855	.	C	T	56.55	.	AC=9;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-13419G>A||||||
1	557153	.	G	A	45.76	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-13717C>T||||||
1	558771	.	C	T	472.43	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||3986|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15335G>A||||||
1	559081	.	G	C	67.58	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802C>G|||||3676|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15645C>G||||||
1	559135	.	T	G	367.4	.	AC=34;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>C|||||3622|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15699A>C||||||
1	559229	.	T	C	53.34	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>G|||||3528|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15793A>G||||||
1	559304	.	A	G	78.67	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802T>C|||||3453|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15868T>C||||||
1	559373	.	C	T	138.89	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||3384|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15937G>A||||||
1	559388	.	G	T	587.08	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802C>A|||||3369|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15952C>A||||||
1	559411	.	T	C	126.48	.	AC=17;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>G|||||3346|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15975A>G||||||
1	559420	.	T	C	252.06	.	AC=17;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>G|||||3337|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-15984A>G||||||
1	559480	.	C	T	298.66	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||4962|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||3277|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16044G>A||||||
1	559586	.	G	A	19.88	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1G>A|||||4856|,A|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802C>T|||||3171|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16150C>T||||||
1	559631	.	A	G	65.51	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>G|||||4811|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802T>C|||||3126|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16195T>C||||||
1	559889	.	A	G	1744.04	.	AC=80;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>G|||||4553|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802T>C|||||2868|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16453T>C||||||
1	559893	.	G	A	973.75	.	AC=64;ANN=A|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1G>A|||||4549|,A|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802C>T|||||2864|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16457C>T||||||
1	559922	.	A	T	543.22	.	AC=39;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>T|||||4520|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802T>A|||||2835|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16486T>A||||||
1	559928	.	T	G	449.21	.	AC=31;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>G|||||4514|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>C|||||2829|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16492A>C||||||
1	559985	.	C	T	192.61	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||4457|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||2772|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16549G>A||||||
1	560052	.	A	G	135.1	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>G|||||4390|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||4968|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802T>C|||||2705|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16616T>C||||||
1	560132	.	C	T	209.65	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||4310|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||4888|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||2625|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16696G>A||||||
1	560147	.	T	G	141.13	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>G|||||4295|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>G|||||4873|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>C|||||2610|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16711A>C||||||
1	560153	.	G	A	85.52	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1G>A|||||4289|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>A|||||4867|,A|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802C>T|||||2604|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16717C>T||||||
1	560376	.	C	T	101.91	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||4066|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||4644|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||2381|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-16940G>A||||||
1	560456	.	T	C	5.47	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>C|||||3986|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||4564|,C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>G|||||2301|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17020A>G||||||
1	560738	.	T	C	72.99	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>C|||||3704|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||4282|,C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>G|||||2019|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17302A>G||||||
1	560747	.	A	T	30.42	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>T|||||3695|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>T|||||4273|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802T>A|||||2010|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17311T>A||||||
1	560949	.	G	A	50.96	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1G>A|||||3493|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>A|||||4071|,A|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802C>T|||||1808|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17513C>T||||||
1	561112	.	T	A	237.7	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>A|||||3330|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>A|||||3908|,A|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>T|||||1645|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17676A>T||||||
1	561136	.	C	T	19.36	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||3306|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||3884|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||1621|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17700G>A||||||
1	561156	.	T	G	1663.22	.	AC=79;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>G|||||3286|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>G|||||3864|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>C|||||1601|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17720A>C||||||
1	561200	.	C	T	1499.85	.	AC=44;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||3242|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||3820|,T|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>A|||||1557|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17764G>A||||||
1	561276	.	T	C	36.41	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>C|||||3166|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||3744|,C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>G|||||1481|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-17840A>G||||||
1	561460	.	C	G	176.2	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>G|||||2982|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>G|||||3560|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>G|||||4994|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>C|||||1297|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-18024G>C||||||
1	561663	.	C	A	69.61	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>A|||||2779|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>A|||||3357|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>A|||||4791|,A|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802G>T|||||1094|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-18227G>T||||||
1	561829	.	A	G	401.95	.	AC=36;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>G|||||2613|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||3191|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||4625|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802T>C|||||928|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-18393T>C||||||
1	562020	.	T	C	408.78	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>C|||||2422|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||3000|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||4434|,C|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>G|||||737|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-18584A>G||||||
1	562202	.	T	G	53.37	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>G|||||2240|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>G|||||2818|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>G|||||4252|,G|downstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.*802A>C|||||555|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-18766A>C||||||
1	562908	.	A	G	598.24	.	AC=33;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>G|||||1534|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||2112|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||3546|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-19472T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|3/3|n.651T>C||||||
1	563116	.	G	C	233.04	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1G>C|||||1326|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>C|||||1904|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>C|||||3338|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-19680C>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|3/3|n.443C>G||||||
1	563363	.	C	T	2268.15	.	AC=87;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||1079|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||1657|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||3091|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||4774|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-19927G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|2/3|n.333G>A||||||
1	563625	.	T	C	4459.36	.	AC=168;ANN=C|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1T>C|||||817|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||1395|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||2829|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||4512|,C|intron_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|1/2|n.93-22A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-20189A>G||||||
1	563764	.	A	C	14.37	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>C|||||678|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>C|||||1256|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>C|||||2690|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>C|||||4373|,C|intron_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|1/2|n.93-161T>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-20328T>G||||||
1	563802	.	A	G	40.22	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1A>G|||||640|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||1218|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||2652|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||4335|,G|intron_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|1/2|n.93-199T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-20366T>C||||||
1	563836	.	C	T	106.55	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||606|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||1184|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||2618|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||4301|,T|intron_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|1/2|n.93-233G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-20400G>A||||||
1	564158	.	C	T	411.75	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1C>T|||||284|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||862|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||2296|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||3979|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||4757|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||4918|,T|intron_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|1/2|n.92+141G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-20722G>A||||||
1	564159	.	G	A	23.95	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.-1G>A|||||283|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>A|||||861|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||2295|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||3978|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||4756|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||4917|,A|intron_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA|1/2|n.92+140C>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-20723C>T||||||
1	564486	.	C	T	48.4	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||96|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||534|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1968|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||3651|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||4429|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||4590|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21050G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.45C>T||||||
1	564495	.	C	T	648.56	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||105|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||525|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1959|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||3642|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||4420|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||4581|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21059G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.54C>T||||||
1	564517	.	G	A	294.46	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||127|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>A|||||503|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1937|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||3620|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||4398|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||4559|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21081C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.76G>A||||||
1	564582	.	C	T	11.48	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||192|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||438|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1872|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||3555|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||4333|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||4494|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21146G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.141C>T||||||
1	564598	.	A	G	2644.59	.	AC=87;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||208|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||422|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1856|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||3539|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||4317|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||4478|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21162T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.157A>G||||||
1	564621	rs10458597	C	T	11265.73	.	AC=44;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||231|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||399|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1833|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||3516|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||4294|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||4455|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21185G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.180C>T||||||
1	564642	.	G	A	4868.42	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||252|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>A|||||378|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1812|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||3495|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||4273|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||4434|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21206C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.201G>A||||||
1	564654	.	G	A	1256.19	.	AC=46;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||264|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>A|||||366|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1800|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||3483|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||4261|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||4422|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21218C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.213G>A||||||
1	564663	.	G	A	1023.17	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||273|,A|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1G>A|||||357|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1791|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||3474|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||4252|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||4413|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21227C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.222G>A||||||
1	564672	.	A	C	812.29	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>G|||||282|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>C|||||348|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>C|||||1782|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>C|||||3465|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>C|||||4243|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>C|||||4404|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:564666_564815|||||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21236T>G||||||,C|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.231A>C||||||
1	564687	.	C	T	308.21	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||297|,T|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1C>T|||||333|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1767|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||3450|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||4228|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||4389|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:564666_564815|||||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21251G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.246C>T||||||
1	564708	.	A	G	297.24	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||318|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||312|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1746|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||3429|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||4207|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||4368|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:564666_564815|||||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21272T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.267A>G||||||
1	564714	.	A	G	208.8	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||324|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||306|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1740|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||3423|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||4201|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||4362|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:564666_564815|||||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21278T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.273A>G||||||
1	564766	.	T	C	282.66	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||376|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||254|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1688|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||3371|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||4149|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||4310|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4990|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:564666_564815|||||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21330A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene|1/1|n.325T>C||||||
1	564862	.	T	C	7552.49	.	AC=74;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||472|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||158|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1592|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||3275|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||4053|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||4214|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4894|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||49|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21426A>G||||||
1	564868	.	T	C	9613.44	.	AC=112;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||478|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||152|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1586|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||3269|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||4047|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||4208|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4888|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||55|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21432A>G||||||
1	564875	.	A	G	504.35	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||485|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||145|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1579|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||3262|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||4040|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||4201|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4881|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||62|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21439T>C||||||
1	564886	.	T	C	479.11	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||496|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||134|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1568|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||3251|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||4029|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||4190|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4870|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||73|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21450A>G||||||
1	564938	.	A	G	50.5	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||548|,G|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1A>G|||||82|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1516|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||3199|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3977|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||4138|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4818|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||125|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21502T>C||||||
1	565006	.	T	C	12613.53	.	AC=186;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||616|,C|upstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.-1T>C|||||14|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1448|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||3131|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3909|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||4070|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4750|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||193|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21570A>G||||||
1	565041	.	G	A	49.17	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||651|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1413|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||3096|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3874|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||4035|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||4715|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||228|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565026_565175|||||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21605C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.22G>A||||||
1	565055	.	C	T	396.55	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||665|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1399|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||3082|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3860|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||4021|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4701|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||242|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565026_565175|||||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21619G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.36C>T||||||
1	565079	.	A	T	156.3	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>A|||||689|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>T|||||1375|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>T|||||3058|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>T|||||3836|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>T|||||3997|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>T|||||4677|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>T|||||266|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565026_565175|||||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21643T>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.60A>T||||||
1	565112	.	A	G	142.25	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||722|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1342|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||3025|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3803|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3964|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4644|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||299|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565026_565175|||||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21676T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.93A>G||||||
1	565130	.	G	A	947.39	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||740|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1324|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||3007|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3785|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3946|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||4626|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||317|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565026_565175|||||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21694C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.111G>A||||||
1	565136	.	T	C	1767.67	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||746|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1318|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||3001|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3779|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3940|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4620|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||323|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565026_565175|||||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21700A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.117T>C||||||
1	565189	.	T	C	447.46	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||799|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1265|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2948|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3726|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3887|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4567|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||376|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21753A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.170T>C||||||
1	565196	.	T	C	154.96	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||806|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1258|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2941|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3719|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3880|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4560|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||383|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21760A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.177T>C||||||
1	565205	.	G	A	1431.05	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||815|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1249|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2932|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3710|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3871|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||4551|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||392|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21769C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.186G>A||||||
1	565246	.	T	C	533.83	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||856|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1208|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2891|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3669|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3830|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4510|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||433|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21810A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.227T>C||||||
1	565265	.	A	G	354.33	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||875|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1189|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2872|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3650|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3811|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4491|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||452|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21829T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.246A>G||||||
1	565282	.	A	G	109.06	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||892|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1172|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2855|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3633|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3794|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4474|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||469|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21846T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.263A>G||||||
1	565286	.	C	T	12110.19	.	AC=222;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||896|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1168|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2851|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3629|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3790|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4470|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||473|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21850G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.267C>T||||||
1	565292	.	T	C	121.45	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||902|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1162|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2845|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3623|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3784|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4464|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||479|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21856A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.273T>C||||||
1	565295	.	A	T	242.51	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>A|||||905|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>T|||||1159|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>T|||||2842|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>T|||||3620|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>T|||||3781|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>T|||||4461|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>T|||||482|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21859T>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.276A>T||||||
1	565317	.	A	G	5974.52	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||927|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1137|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2820|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3598|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3759|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4439|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||504|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21881T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.298A>G||||||
1	565325	.	A	G	734.29	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||935|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1129|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2812|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3590|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3751|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4431|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||512|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21889T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.306A>G||||||
1	565340	.	A	G	965.3	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||950|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1114|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2797|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3575|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3736|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4416|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||527|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21904T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.321A>G||||||
1	565343	.	A	G	4536.71	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||953|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1111|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2794|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3572|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3733|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4413|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||530|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21907T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.324A>G||||||
1	565361	.	A	G	580.27	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||971|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1093|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2776|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3554|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3715|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4395|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||548|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21925T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.342A>G||||||
1	565370	.	G	A	18812.44	.	AC=52;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||980|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||1084|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2767|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3545|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3706|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||4386|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||557|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21934C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.351G>A||||||
1	565373	.	T	C	1723.69	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||983|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1081|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2764|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3542|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3703|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4383|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||560|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21937A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.354T>C||||||
1	565374	rs9701779	A	G	29980.86	.	AC=103;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||984|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1080|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2763|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3541|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3702|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4382|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||561|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21938T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.355A>G||||||
1	565383	.	A	G	1276.08	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||993|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||1071|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2754|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3532|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3693|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4373|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||570|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21947T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.364A>G||||||
1	565406	.	C	T	16649.2	.	AC=191;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1016|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1048|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2731|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3509|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3670|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4350|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||593|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21970G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.387C>T||||||
1	565433	rs9701055	C	T	1522.78	.	AC=30;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1043|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||1021|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2704|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3482|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3643|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4323|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||620|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-21997G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.414C>T||||||
1	565454	.	T	C	9914.0	.	AC=125;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1064|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||1000|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2683|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3461|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3622|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4302|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||641|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22018A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.435T>C||||||
1	565464	rs118203762	T	C	6508.88	.	AC=93;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1074|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||990|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2673|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3451|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3612|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4292|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||651|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22028A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.445T>C||||||
1	565467	.	A	G	962.33	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1077|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||987|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2670|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3448|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3609|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4289|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||654|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22031T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.448A>G||||||
1	565469	.	C	T	107.4	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1079|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||985|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2668|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3446|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3607|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4287|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||656|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22033G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.450C>T||||||
1	565476	.	C	G	188.5	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>C|||||1086|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>G|||||978|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>G|||||2661|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>G|||||3439|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>G|||||3600|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>G|||||4280|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>G|||||663|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22040G>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.457C>G||||||
1	565490	.	T	C	6433.94	.	AC=83;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1100|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||964|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2647|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3425|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3586|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4266|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||677|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22054A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.471T>C||||||
1	565508	.	G	A	2786.98	.	AC=66;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1118|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||946|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2629|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3407|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3568|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||4248|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||695|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22072C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.489G>A||||||
1	565527	.	T	C	15.6	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1137|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||927|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2610|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3388|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3549|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4229|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||714|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22091A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.508T>C||||||
1	565541	.	A	G	6154.5	.	AC=94;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1151|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||913|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2596|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3374|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3535|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4215|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||728|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22105T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.522A>G||||||
1	565554	.	T	C	221.47	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1164|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||900|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2583|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3361|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3522|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4202|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||741|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22118A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.535T>C||||||
1	565586	.	A	G	416.77	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1196|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||868|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2551|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3329|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3490|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4170|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||773|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22150T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.567A>G||||||
1	565591	.	C	T	18529.71	.	AC=265;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1201|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||863|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2546|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3324|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3485|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4165|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||778|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22155G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.572C>T||||||
1	565595	.	A	G	32.89	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1205|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||859|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2542|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3320|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3481|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4161|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||782|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22159T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.576A>G||||||
1	565596	rs9782892	G	A	438.55	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1206|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||858|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2541|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3319|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3480|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||4160|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||783|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22160C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.577G>A||||||
1	565598	.	T	C	10.91	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1208|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||856|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2539|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3317|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3478|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4158|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||785|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22162A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.579T>C||||||
1	565599	.	C	T	52.91	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1209|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||855|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2538|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3316|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3477|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4157|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||786|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22163G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.580C>T||||||
1	565623	.	A	G	755.69	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1233|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||831|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2514|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3292|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3453|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4133|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||810|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22187T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.604A>G||||||
1	565646	.	T	C	2009.34	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1256|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||808|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2491|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3269|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3430|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4110|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||833|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22210A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.627T>C||||||
1	565658	.	T	C	1565.45	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1268|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||796|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2479|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3257|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3418|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4098|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||845|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22222A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.639T>C||||||
1	565661	.	C	T	1305.37	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1271|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||793|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2476|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3254|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3415|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4095|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||848|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22225G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.642C>T||||||
1	565668	.	C	T	320.83	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1278|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||786|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2469|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||3247|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3408|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||4088|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||855|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22232G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.649C>T||||||
1	565697	.	A	G	10521.84	.	AC=151;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1307|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||757|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2440|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3218|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3379|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4059|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||884|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22261T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.678A>G||||||
1	565703	.	A	G	1088.59	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1313|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||751|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2434|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||3212|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3373|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||4053|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||890|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22267T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.684A>G||||||
1	565712	.	T	C	852.69	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1322|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||742|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2425|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3203|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3364|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||4044|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||899|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22276A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.693T>C||||||
1	565728	.	C	A	5460.11	.	AC=76;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>T|||||1338|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>A|||||726|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>A|||||2409|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>A|||||3187|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>A|||||3348|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>A|||||4028|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>A|||||915|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22292G>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.709C>A||||||
1	565781	.	G	A	717.22	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1391|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||673|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2356|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3134|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3295|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3975|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||968|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22345C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.762G>A||||||
1	565827	.	T	C	24.02	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1437|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||627|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2310|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3088|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3249|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||3929|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1014|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22391A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.808T>C||||||
1	565866	.	G	A	137.35	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1476|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||588|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2271|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3049|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3210|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3890|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1053|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22430C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.847G>A||||||
1	565870	.	T	C	1809.39	.	AC=70;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1480|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||584|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2267|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||3045|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3206|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||3886|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1057|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22434A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.851T>C||||||
1	565881	.	C	A	40.65	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>T|||||1491|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>A|||||573|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>A|||||2256|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>A|||||3034|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>A|||||3195|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>A|||||3875|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>A|||||1068|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22445G>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.862C>A||||||
1	565901	.	G	A	1387.4	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1511|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||553|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2236|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||3014|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3175|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3855|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1088|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22465C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.882G>A||||||
1	565935	rs55973403	C	T	6970.96	.	AC=93;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1545|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||519|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2202|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2980|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3141|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3821|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1122|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22499G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.916C>T||||||
1	565937	.	T	C	1902.42	.	AC=47;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1547|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||517|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||2200|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2978|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||3139|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||3819|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1124|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22501A>G||||||,C|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.918T>C||||||
1	565946	.	C	T	165.35	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1556|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||508|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2191|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2969|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3130|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3810|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1133|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22510G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.927C>T||||||
1	565967	.	G	A	498.23	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1577|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||487|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2170|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2948|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3109|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3789|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1154|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22531C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.948G>A||||||
1	565976	.	C	T	2216.02	.	AC=116;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1586|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||478|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2161|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2939|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3100|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3780|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1163|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22540G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.957C>T||||||
1	565987	.	C	T	616.92	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1597|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||467|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2150|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2928|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||3089|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3769|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1174|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:565866_566015|||||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22551G>A||||||,T|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.968C>T||||||
1	566021	.	A	G	1478.9	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1631|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||433|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||2116|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||2894|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||3055|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||3735|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||1208|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22585T>C||||||,G|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.1002A>G||||||
1	566024	.	G	A	1418.71	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1634|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||430|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2113|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2891|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3052|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3732|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1211|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22588C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.1005G>A||||||
1	566048	.	G	A	6822.71	.	AC=122;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1658|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||406|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||2089|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2867|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||3028|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3708|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1235|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22612C>T||||||,A|non_coding_exon_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene|1/1|n.1029G>A||||||
1	566130	.	C	T	1197.75	.	AC=51;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1740|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||324|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||2007|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2785|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2946|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3626|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1317|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||67|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22694G>A||||||
1	566152	.	C	T	71.02	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1762|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||302|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1985|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2763|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2924|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3604|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1339|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||89|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22716G>A||||||
1	566153	.	C	T	1168.99	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||1763|,T|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1C>T|||||301|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1984|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2762|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2923|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3603|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1340|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||90|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22717G>A||||||
1	566206	.	A	G	98.22	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1816|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||248|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1931|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||2709|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||2870|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||3550|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||1393|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||143|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22770T>C||||||
1	566323	.	G	A	497.68	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||1933|,A|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1G>A|||||131|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||1814|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2592|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||2753|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3433|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1510|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||260|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22887C>T||||||
1	566364	.	T	C	145.19	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||1974|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||90|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1773|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2551|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2712|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||3392|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1551|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||301|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22928A>G||||||
1	566371	.	A	G	2190.87	.	AC=73;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||1981|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||83|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1766|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||2544|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||2705|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||3385|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||1558|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||308|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22935T>C||||||
1	566390	.	T	C	4929.42	.	AC=94;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2000|,C|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1T>C|||||64|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1747|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2525|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2686|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||3366|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1577|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||327|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22954A>G||||||
1	566393	.	A	G	136.72	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||2003|,G|upstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.-1A>G|||||61|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1744|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||2522|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||2683|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||3363|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||1580|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||330|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-22957T>C||||||
1	566564	.	T	C	53.8	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2174|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1573|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2351|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2512|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||3192|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1751|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||501|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23128A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.111T>C||||||
1	566573	.	A	G	1725.59	.	AC=53;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||2183|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1564|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||2342|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||2503|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||3183|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||1760|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||510|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23137T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.120A>G||||||
1	566576	.	G	A	497.86	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||2186|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||1561|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2339|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||2500|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3180|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1763|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||513|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23140C>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.123G>A||||||
1	566597	.	A	G	110.02	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||2207|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1540|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||2318|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||2479|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||3159|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||1784|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||534|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23161T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.144A>G||||||
1	566621	.	T	C	251.08	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2231|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1516|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2294|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2455|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||3135|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1808|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||558|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23185A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.168T>C||||||
1	566714	.	C	T	8.48	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2324|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1423|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2201|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2362|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||3042|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1901|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||651|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23278G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.261C>T||||||
1	566732	.	G	A	107.25	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||2342|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||1405|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2183|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||2344|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||3024|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1919|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||669|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23296C>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.279G>A||||||
1	566771	.	C	T	1152.97	.	AC=51;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2381|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1366|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2144|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2305|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2985|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||1958|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||708|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23335G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.318C>T||||||
1	566792	.	T	C	2387.5	.	AC=81;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2402|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1345|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2123|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2284|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2964|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||1979|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||729|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23356A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.339T>C||||||
1	566799	.	G	A	17.45	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||2409|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||1338|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2116|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||2277|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||2957|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||1986|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||736|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23363C>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.346G>A||||||
1	566816	.	C	A	883.46	.	AC=41;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>T|||||2426|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>A|||||1321|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>A|||||2099|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>A|||||2260|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>A|||||2940|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>A|||||2003|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>A|||||753|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23380G>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.363C>A||||||
1	566843	.	T	C	72.57	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2453|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1294|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2072|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2233|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2913|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2030|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||780|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23407A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.390T>C||||||
1	566847	.	T	C	63.32	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2457|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1290|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||2068|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2229|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2909|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2034|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||784|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23411A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.394T>C||||||
1	566849	.	G	A	4676.36	.	AC=82;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||2459|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||1288|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||2066|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||2227|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||2907|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||2036|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||786|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23413C>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.396G>A||||||
1	566861	.	C	T	67.52	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2471|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1276|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2054|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2215|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2895|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2048|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||798|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23425G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.408C>T||||||
1	566875	.	C	T	1734.21	.	AC=46;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2485|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1262|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||2040|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2201|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2881|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2062|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||812|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23439G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.422C>T||||||
1	566916	.	A	G	2455.67	.	AC=79;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||2526|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1221|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||1999|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||2160|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||2840|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||2103|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||853|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23480T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.463A>G||||||
1	566933	.	A	G	1727.13	.	AC=52;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||2543|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1204|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||1982|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||2143|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||2823|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||2120|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||870|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23497T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.480A>G||||||
1	566939	.	C	T	68.6	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2549|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1198|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1976|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2137|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2817|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2126|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||876|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23503G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.486C>T||||||
1	566942	.	T	C	80.6	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2552|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1973|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2134|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2814|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2129|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||879|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23506A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.489T>C||||||
1	566960	.	T	C	2749.87	.	AC=54;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2570|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1177|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1955|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2116|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2796|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2147|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||897|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23524A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.507T>C||||||
1	566963	.	T	C	136.72	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2573|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1174|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1952|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2113|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2793|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2150|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||900|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23527A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.510T>C||||||
1	567002	.	T	C	4559.95	.	AC=66;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2612|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1135|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1913|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2074|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2754|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2189|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||939|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23566A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.549T>C||||||
1	567023	.	C	T	41.13	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2633|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1114|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1892|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2053|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2733|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2210|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||960|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23587G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.570C>T||||||
1	567033	.	T	C	2001.14	.	AC=48;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2643|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1104|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1882|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2043|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2723|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2220|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||970|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23597A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.580T>C||||||
1	567039	.	C	A	38.26	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>T|||||2649|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>A|||||1098|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>A|||||1876|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>A|||||2037|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>A|||||2717|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>A|||||2226|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>A|||||976|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23603G>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.586C>A||||||
1	567047	.	T	C	182.08	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2657|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1090|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1868|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||2029|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2709|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2234|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||984|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23611A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.594T>C||||||
1	567062	.	C	T	1674.44	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2672|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1075|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1853|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||2014|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2694|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2249|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||999|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23626G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.609C>T||||||
1	567077	.	A	G	7.22	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||2687|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||1060|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||1838|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1999|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||2679|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||2264|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||1014|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23641T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.624A>G||||||
1	567092	.	T	C	2025.63	.	AC=61;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2702|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||1045|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1823|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1984|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2664|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2279|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1029|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23656A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.639T>C||||||
1	567098	.	C	T	180.8	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2708|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1039|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1817|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1978|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2658|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2285|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1035|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23662G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.645C>T||||||
1	567119	.	A	C	2278.06	.	AC=62;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>G|||||2729|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>C|||||1018|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>C|||||1796|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>C|||||1957|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>C|||||2637|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>C|||||2306|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>C|||||1056|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23683T>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.666A>C||||||
1	567137	rs9326623	C	T	26.93	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2747|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||1000|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1778|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1939|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2619|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2324|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1074|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23701G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.684C>T||||||
1	567170	.	T	C	5.14	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2780|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||967|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1745|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1906|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2586|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2357|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1107|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23734A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.717T>C||||||
1	567191	.	C	T	6607.19	.	AC=139;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2801|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||946|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1724|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1885|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2565|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2378|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1128|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23755G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.738C>T||||||
1	567213	.	A	G	401.61	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||2823|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||924|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||1702|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1863|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||2543|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||2400|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||1150|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23777T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.760A>G||||||
1	567230	.	T	C	125.65	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2840|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||907|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1685|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1846|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2526|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2417|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1167|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23794A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.777T>C||||||
1	567264	.	C	T	344.66	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||2874|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||873|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1651|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1812|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2492|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2451|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1201|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23828G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.811C>T||||||
1	567378	.	T	C	2621.91	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||2988|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||759|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1537|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1698|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2378|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2565|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1315|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-23942A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.925T>C||||||
1	567468	.	G	A	909.67	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||3078|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||669|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||1447|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||1608|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||2288|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||2655|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||1405|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24032C>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1015G>A||||||
1	567486	.	T	C	1765.18	.	AC=47;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3096|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||651|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1429|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1590|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2270|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2673|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1423|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24050A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1033T>C||||||
1	567489	.	T	C	1973.2	.	AC=53;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3099|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||648|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1426|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1587|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2267|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2676|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1426|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24053A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1036T>C||||||
1	567540	.	A	G	4830.75	.	AC=49;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3150|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||597|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||1375|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1536|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||2216|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||2727|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||1477|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24104T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1087A>G||||||
1	567573	.	T	C	338.69	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3183|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||564|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1342|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1503|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2183|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2760|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1510|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24137A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1120T>C||||||
1	567579	.	C	T	16878.37	.	AC=237;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||3189|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||558|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1336|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1497|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2177|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2766|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1516|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24143G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1126C>T||||||
1	567697	.	G	A	6549.08	.	AC=93;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||3307|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||440|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||1218|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||1379|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||2059|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||2884|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||1634|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24261C>T||||||,A|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1244G>A||||||
1	567726	.	T	C	4597.74	.	AC=53;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3336|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||411|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1189|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1350|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||2030|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2913|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1663|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24290A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1273T>C||||||
1	567747	.	C	T	148.75	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||3357|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||390|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1168|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1329|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||2009|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||2934|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1684|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24311G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1294C>T||||||
1	567783	.	T	C	21573.05	.	AC=213;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3393|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||354|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1132|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1293|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1973|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2970|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1720|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24347A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1330T>C||||||
1	567807	.	T	C	1511.91	.	AC=72;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3417|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||330|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1108|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1269|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1949|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||2994|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1744|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24371A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1354T>C||||||
1	567825	.	C	T	11208.0	.	AC=87;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||3435|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||312|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||1090|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1251|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1931|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3012|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1762|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24389G>A||||||,T|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1372C>T||||||
1	567829	.	T	C	10.36	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3439|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||308|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||1086|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1247|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1927|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3016|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1766|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24393A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1376T>C||||||
1	567867	.	A	G	8924.53	.	AC=155;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3477|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||270|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||1048|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1209|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1889|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3054|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||1804|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24431T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1414A>G||||||
1	567915	.	A	G	133.02	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3525|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||222|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||1000|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1161|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1841|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3102|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||1852|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24479T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1462A>G||||||
1	567940	.	T	C	8714.18	.	AC=66;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3550|,C|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1T>C|||||197|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||975|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||1136|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1816|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3127|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||1877|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24504A>G||||||,C|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1487T>C||||||
1	567975	.	A	G	1499.29	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3585|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||162|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||940|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1101|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1781|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3162|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||1912|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24539T>C||||||,G|non_coding_exon_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene|1/1|n.1522A>G||||||
1	568043	.	C	T	1254.6	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||3653|,T|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1C>T|||||94|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||872|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||1033|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1713|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3230|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||1980|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||47|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24607G>A||||||
1	568049	.	G	A	2785.52	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||3659|,A|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1G>A|||||88|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||866|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||1027|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1707|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3236|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||1986|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||53|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24613C>T||||||
1	568067	.	A	G	1259.09	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3677|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||70|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||848|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1009|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1689|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3254|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2004|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||71|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24631T>C||||||
1	568072	.	A	G	1289.36	.	AC=52;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3682|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||65|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||843|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||1004|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1684|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3259|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2009|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||76|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24636T>C||||||
1	568110	.	A	G	2566.33	.	AC=99;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3720|,G|upstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.-1A>G|||||27|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||805|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||966|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1646|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3297|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2047|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||114|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24674T>C||||||
1	568151	.	G	A	32.34	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||3761|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||764|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||925|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1605|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3338|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2088|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||155|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24715C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.15G>A||||||
1	568161	.	C	T	3030.93	.	AC=97;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||3771|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||754|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||915|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1595|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3348|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2098|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||165|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24725G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.25C>T||||||
1	568175	.	T	A	465.75	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>T|||||3785|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>A|||||740|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>A|||||901|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>A|||||1581|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>A|||||3362|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>A|||||2112|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>A|||||179|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24739A>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.39T>A||||||
1	568201	.	T	C	8247.97	.	AC=102;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3811|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||714|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||875|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1555|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3388|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2138|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||205|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24765A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.65T>C||||||
1	568214	.	C	T	9264.46	.	AC=115;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||3824|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||701|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||862|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1542|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3401|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2151|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||218|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24778G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.78C>T||||||
1	568224	.	A	G	58.45	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3834|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||691|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||852|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1532|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3411|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2161|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||228|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24788T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.88A>G||||||
1	568256	.	C	T	7265.02	.	AC=100;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||3866|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||659|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||820|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1500|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3443|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2193|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||260|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24820G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.120C>T||||||
1	568322	.	A	G	1130.97	.	AC=29;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3932|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||593|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||754|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1434|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3509|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2259|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||326|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24886T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.186A>G||||||
1	568335	.	A	G	5.86	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3945|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||580|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||741|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1421|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3522|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2272|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||339|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24899T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.199A>G||||||
1	568340	.	G	A	208.62	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||3950|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||575|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||736|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1416|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3527|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2277|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||344|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24904C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.204G>A||||||
1	568361	.	T	C	8384.95	.	AC=120;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||3971|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||554|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||715|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1395|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3548|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2298|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||365|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24925A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.225T>C||||||
1	568379	.	A	G	249.56	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||3989|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||536|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||697|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1377|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3566|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2316|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||383|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24943T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.243A>G||||||
1	568400	.	C	T	35.54	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4010|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||515|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||676|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1356|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3587|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2337|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||404|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24964G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.264C>T||||||
1	568409	.	C	T	21.42	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4019|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||506|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||667|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1347|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3596|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2346|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||413|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24973G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.273C>T||||||
1	568410	.	G	A	87.45	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4020|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||505|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||666|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1346|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3597|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2347|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||414|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24974C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.274G>A||||||
1	568412	.	T	C	8086.09	.	AC=144;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4022|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||503|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||664|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1344|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3599|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2349|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||416|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24976A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.276T>C||||||
1	568419	.	T	C	8547.17	.	AC=91;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4029|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||496|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||657|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1337|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3606|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2356|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||423|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-24983A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.283T>C||||||
1	568442	.	T	C	7540.23	.	AC=83;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4052|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||473|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||634|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1314|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3629|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2379|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||446|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25006A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.306T>C||||||
1	568451	rs78032279	C	T	9903.89	.	AC=148;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4061|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||464|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||625|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1305|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3638|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2388|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||455|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25015G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.315C>T||||||
1	568463	.	A	G	6526.59	.	AC=79;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4073|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||452|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||613|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1293|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3650|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2400|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||467|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25027T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.327A>G||||||
1	568478	.	C	T	7205.68	.	AC=124;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4088|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||437|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||598|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1278|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3665|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2415|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||482|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25042G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.342C>T||||||
1	568509	.	C	T	14.65	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4119|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||406|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||567|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1247|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3696|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2446|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||513|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25073G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.373C>T||||||
1	568562	.	A	G	7233.06	.	AC=156;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4172|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||353|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||514|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1194|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3749|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2499|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||566|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25126T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.426A>G||||||
1	568572	.	G	A	1950.03	.	AC=69;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4182|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||343|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||504|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1184|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3759|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2509|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||576|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25136C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.436G>A||||||
1	568588	.	G	A	38.43	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4198|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||327|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||488|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1168|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3775|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2525|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||592|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25152C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.452G>A||||||
1	568589	.	T	C	7110.22	.	AC=145;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4199|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||326|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||487|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1167|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3776|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2526|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||593|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25153A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.453T>C||||||
1	568592	.	A	G	20.92	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4202|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||323|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||484|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1164|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3779|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2529|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||596|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25156T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.456A>G||||||
1	568610	.	C	T	6941.34	.	AC=137;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4220|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||305|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||466|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1146|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3797|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2547|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||614|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25174G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.474C>T||||||
1	568616	.	A	G	844.37	.	AC=44;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4226|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||299|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||460|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1140|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3803|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2553|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||620|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25180T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.480A>G||||||
1	568631	rs76167418	C	T	5817.83	.	AC=120;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4241|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||284|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||445|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1125|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3818|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2568|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||635|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25195G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.495C>T||||||
1	568665	.	G	A	141.53	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4275|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||250|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||411|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1091|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3852|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2602|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||669|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25229C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.529G>A||||||
1	568691	.	T	C	669.64	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4301|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||224|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||385|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1065|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3878|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2628|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||695|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25255A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.555T>C||||||
1	568703	.	A	G	135.9	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4313|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||212|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||373|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1053|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3890|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2640|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||707|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25267T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.567A>G||||||
1	568709	.	A	G	2694.76	.	AC=105;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4319|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||206|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||367|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||1047|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||3896|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2646|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||713|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25273T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.573A>G||||||
1	568718	.	C	T	15.62	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4328|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||197|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||358|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||1038|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3905|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2655|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||722|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25282G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.582C>T||||||
1	568752	.	T	C	229.02	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4362|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||163|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||324|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||1004|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||3939|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2689|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||756|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25316A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.616T>C||||||
1	568755	.	G	A	1022.44	.	AC=60;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4365|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||160|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||321|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||1001|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3942|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2692|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||759|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25319C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.619G>A||||||
1	568800	.	G	A	1000.37	.	AC=57;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4410|,A|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1G>A|||||115|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||276|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||956|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||3987|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2737|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||804|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25364C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.664G>A||||||
1	568803	.	C	T	278.68	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4413|,T|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1C>T|||||112|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||273|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||953|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||3990|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2740|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||807|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25367G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene|1/1|n.667C>T||||||
1	568851	.	A	G	141.4	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4461|,G|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1A>G|||||64|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||225|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||905|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4038|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2788|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||855|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||33|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25415T>C||||||
1	568860	.	T	C	498.0	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4470|,C|upstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.-1T>C|||||55|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||216|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||896|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4047|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2797|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||864|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||42|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25424A>G||||||
1	568932	.	T	C	109.65	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4542|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||144|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||824|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4119|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2869|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||936|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||114|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25496A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.18T>C||||||
1	568936	.	G	A	320.09	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4546|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||140|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||820|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4123|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2873|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||940|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||118|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25500C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.22G>A||||||
1	568941	.	A	G	15033.73	.	AC=214;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4551|,G|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1A>G|||||135|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||815|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4128|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||2878|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||945|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||123|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25505T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.27A>G||||||
1	568953	.	T	C	157.4	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4563|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||123|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||803|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4140|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2890|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||957|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||135|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25517A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.39T>C||||||
1	568955	.	C	T	87.28	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4565|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||121|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||801|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4142|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2892|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||959|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||137|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25519G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.41C>T||||||
1	568963	.	C	T	4959.71	.	AC=45;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4573|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||113|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||793|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4150|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2900|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||967|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||145|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25527G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.49C>T||||||
1	568977	.	C	T	2680.5	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4587|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||99|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||779|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4164|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2914|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||981|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||159|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25541G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.63C>T||||||
1	569004	.	T	C	37475.88	.	AC=181;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4614|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||72|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||752|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4191|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2941|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1008|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||186|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25568A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.90T>C||||||
1	569010	.	T	C	39081.3	.	AC=174;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4620|,C|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1T>C|||||66|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||746|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4197|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||2947|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1014|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||192|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25574A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.96T>C||||||
1	569016	.	C	T	2255.54	.	AC=87;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4626|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||60|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||740|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4203|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2953|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1020|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||198|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25580G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.102C>T||||||
1	569017	.	C	T	6130.52	.	AC=44;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4627|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||59|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||739|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4204|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2954|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1021|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||199|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25581G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.103C>T||||||
1	569027	.	C	T	494.45	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4637|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||49|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||729|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4214|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2964|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1031|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||209|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25591G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.113C>T||||||
1	569034	.	G	A	991.71	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4644|,A|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1G>A|||||42|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||722|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4221|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||2971|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1038|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||216|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25598C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.120G>A||||||
1	569052	.	C	T	40585.39	.	AC=232;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4662|,T|upstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.-1C>T|||||24|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||704|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4239|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||2989|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1056|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||234|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25616G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.138C>T||||||
1	569076	.	A	G	359.16	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4686|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||680|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4263|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3013|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1080|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||258|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25640T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.162A>G||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.1A>G||||||
1	569094	.	A	G	20379.42	.	AC=248;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4704|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||662|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4281|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3031|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1098|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||276|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25658T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.180A>G||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.19A>G||||||
1	569106	.	G	A	407.86	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4716|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||650|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4293|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3043|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1110|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||288|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25670C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.192G>A||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.31G>A||||||
1	569112	.	A	G	478.92	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4722|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||644|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4299|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3049|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1116|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||294|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25676T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.198A>G||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.37A>G||||||
1	569115	.	A	G	7749.2	.	AC=43;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4725|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||641|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4302|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3052|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1119|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||297|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25679T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.201A>G||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.40A>G||||||
1	569116	.	T	C	226.05	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4726|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||640|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4303|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3053|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1120|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||298|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25680A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.202T>C||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.41T>C||||||
1	569121	.	G	A	282.09	.	AC=3;ANN=A|splice_region_variant&non_coding_exon_variant|LOW|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene|1/1|n.207G>A||||||,A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4731|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||635|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4308|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3058|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1125|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||303|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25685C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.46G>A||||||
1	569122	.	G	A	154.69	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4732|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||634|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4309|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3059|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1126|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||304|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||1|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25686C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.47G>A||||||
1	569131	.	C	T	508.77	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4741|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||625|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4318|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3068|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1135|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||313|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||10|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25695G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.56C>T||||||
1	569133	.	G	A	4561.1	.	AC=48;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4743|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||623|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4320|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3070|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1137|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||315|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||12|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25697C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.58G>A||||||
1	569153	.	T	C	325.14	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4763|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||603|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4340|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3090|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1157|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||335|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||32|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25717A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.78T>C||||||
1	569167	.	T	C	207.35	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4777|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||589|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4354|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3104|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1171|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||349|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||46|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25731A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.92T>C||||||
1	569168	.	C	T	872.34	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4778|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||588|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4355|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3105|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1172|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||350|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||47|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25732G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.93C>T||||||
1	569204	.	T	C	10020.17	.	AC=152;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4814|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||552|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4391|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3141|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1208|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||386|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||83|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25768A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.129T>C||||||
1	569208	.	A	G	14.46	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4818|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||548|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4395|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3145|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1212|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||390|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||87|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25772T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.133A>G||||||
1	569217	.	T	C	537.7	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4827|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||539|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4404|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3154|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1221|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||399|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||96|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25781A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.142T>C||||||
1	569226	.	C	A	27351.86	.	AC=259;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>T|||||4836|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>A|||||530|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>A|||||4413|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>A|||||3163|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>A|||||1230|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>A|||||408|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>A|||||105|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25790G>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.151C>A||||||
1	569250	.	G	A	15056.97	.	AC=125;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4860|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||506|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4437|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3187|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1254|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||432|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||129|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25814C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.175G>A||||||
1	569267	.	G	A	33957.24	.	AC=269;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4877|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||489|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4454|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3204|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1271|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||449|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||146|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25831C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.192G>A||||||
1	569279	.	A	G	67.1	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4889|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||477|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4466|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3216|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1283|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||461|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||158|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25843T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.204A>G||||||
1	569291	.	A	G	51.21	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1T>C|||||4901|,G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||465|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4478|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3228|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1295|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||473|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||170|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25855T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.216A>G||||||
1	569297	.	C	T	149.94	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4907|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||459|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4484|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3234|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1301|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||479|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||176|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25861G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.222C>T||||||
1	569305	.	T	C	337.73	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4915|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||451|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4492|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3242|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1309|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||487|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||184|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25869A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.230T>C||||||
1	569311	.	T	C	431.63	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4921|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||445|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4498|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3248|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1315|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||493|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||190|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25875A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.236T>C||||||
1	569317	.	C	T	89.44	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4927|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||439|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4504|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3254|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1321|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||499|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||196|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25881G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.242C>T||||||
1	569321	.	T	C	285.91	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4931|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||435|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4508|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3258|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1325|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||503|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||200|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25885A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.246T>C||||||
1	569339	.	G	A	4151.83	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1C>T|||||4949|,A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||417|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4526|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3276|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1343|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||521|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||218|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25903C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.264G>A||||||
1	569342	.	T	C	1168.46	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1A>G|||||4952|,C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||414|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4529|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3279|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1346|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||524|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||221|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25906A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.267T>C||||||
1	569343	.	C	T	44524.31	.	AC=133;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4953|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||413|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4530|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3280|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1347|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||525|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||222|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25907G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.268C>T||||||
1	569367	.	C	T	4252.06	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.5|ENSG00000223659|transcript|ENST00000452176|lincRNA||n.-1G>A|||||4977|,T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||389|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4554|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3304|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1371|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||549|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||246|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25931G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.292C>T||||||
1	569391	.	A	G	2381.28	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||365|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4578|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3328|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1395|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||573|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||270|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25955T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.316A>G||||||
1	569403	.	G	A	2418.51	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||353|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4590|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3340|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1407|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||585|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||282|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25967C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.328G>A||||||
1	569405	.	G	A	7973.54	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||351|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4592|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3342|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1409|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||587|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||284|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25969C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.330G>A||||||
1	569414	.	G	A	4532.16	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||342|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4601|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3351|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1418|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||596|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||293|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25978C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.339G>A||||||
1	569416	.	T	C	208.79	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||340|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4603|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3353|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1420|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||598|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||295|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25980A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.341T>C||||||
1	569424	.	T	C	19781.63	.	AC=42;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||332|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4611|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3361|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1428|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||606|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||303|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25988A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.349T>C||||||
1	569426	.	T	C	663.73	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||330|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4613|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3363|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1430|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||608|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||305|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25990A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.351T>C||||||
1	569430	.	T	C	61.78	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||326|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4617|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3367|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1434|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||612|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||309|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-25994A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.355T>C||||||
1	569445	.	G	A	1250.29	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||311|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4632|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3382|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1449|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||627|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||324|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26009C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.370G>A||||||
1	569492	.	T	C	12832.36	.	AC=217;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||264|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4679|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3429|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1496|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||674|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||371|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26056A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.417T>C||||||
1	569495	.	A	G	115.93	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||261|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4682|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3432|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1499|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||677|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||374|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26059T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.420A>G||||||
1	569513	.	C	T	247.2	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||243|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4700|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3450|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1517|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||695|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||392|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26077G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.438C>T||||||
1	569535	.	A	G	38.7	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||221|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4722|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3472|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1539|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||717|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||414|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26099T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.460A>G||||||
1	569543	.	G	A	372.34	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||213|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4730|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3480|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1547|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||725|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||422|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26107C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.468G>A||||||
1	569567	.	T	C	216.68	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||189|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4754|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3504|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1571|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||749|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||446|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26131A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.492T>C||||||
1	569591	.	C	T	1773.45	.	AC=30;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||165|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4778|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3528|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1595|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||773|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||470|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26155G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.516C>T||||||
1	569604	.	G	A	563.66	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||152|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4791|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3541|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1608|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||786|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||483|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26168C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.529G>A||||||
1	569608	.	C	T	35.68	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1C>T|||||148|,T|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372C>T|||||4795|,T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3545|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1612|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||790|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||487|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26172G>A||||||,T|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.533C>T||||||
1	569609	.	A	C	2882.61	.	AC=102;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>C|||||147|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>C|||||4796|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>C|||||3546|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>C|||||1613|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>C|||||791|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>C|||||488|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26173T>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.534A>C||||||
1	569621	.	A	G	246.07	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||135|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4808|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3558|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1625|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||803|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||500|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26185T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.546A>G||||||
1	569624	.	T	C	9231.28	.	AC=128;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||132|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4811|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3561|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1628|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||806|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||503|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26188A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.549T>C||||||
1	569639	.	T	C	315.29	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||117|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4826|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3576|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1643|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||821|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||518|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26203A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.564T>C||||||
1	569647	.	T	C	184.76	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||109|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4834|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3584|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1651|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||829|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||526|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26211A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.572T>C||||||
1	569650	.	T	C	112.1	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||106|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4837|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3587|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1654|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||832|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||529|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26214A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.575T>C||||||
1	569672	.	G	A	124.6	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||84|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4859|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3609|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1676|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||854|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||551|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26236C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.597G>A||||||
1	569691	.	G	A	884.62	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1G>A|||||65|,A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4878|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3628|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1695|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||873|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||570|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26255C>T||||||,A|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.616G>A||||||
1	569697	.	T	C	75.37	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||59|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4884|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3634|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1701|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||879|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||576|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26261A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.622T>C||||||
1	569699	.	A	G	335.4	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||57|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4886|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3636|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1703|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||881|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||578|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26263T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.624A>G||||||
1	569710	.	A	G	209.56	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||46|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4897|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3647|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1714|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||892|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||589|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26274T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.635A>G||||||
1	569714	.	T	C	72.75	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||42|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4901|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3651|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1718|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||896|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||593|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26278A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.639T>C||||||
1	569717	.	T	C	12301.49	.	AC=179;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1T>C|||||39|,C|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372T>C|||||4904|,C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3654|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||1721|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||899|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||596|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26281A>G||||||,C|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.642T>C||||||
1	569729	.	A	G	528.38	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.-1A>G|||||27|,G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4916|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3666|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1733|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||911|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||608|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26293T>C||||||,G|non_coding_exon_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene|1/1|n.654A>G||||||
1	569770	.	A	G	1366.8	.	AC=37;ANN=G|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372A>G|||||4957|,G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3707|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1774|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||952|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||649|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||14|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26334T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.15A>G||||||
1	569803	.	G	A	7929.36	.	AC=161;ANN=A|downstream_gene_variant|MODIFIER|MTND1P23|ENSG00000225972|transcript|ENST00000416931|unprocessed_pseudogene||n.*372G>A|||||4990|,A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3740|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1807|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||985|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||682|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||47|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26367C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.48G>A||||||
1	569818	.	C	T	9.67	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3755|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1822|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1000|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||697|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||62|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26382G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.63C>T||||||
1	569845	.	C	T	236.99	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3782|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1849|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1027|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||724|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||89|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26409G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.90C>T||||||
1	569874	.	C	T	799.99	.	AC=53;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3811|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1878|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1056|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||753|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||118|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26438G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.119C>T||||||
1	569878	.	C	G	960.34	.	AC=54;ANN=G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>G|||||3815|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>G|||||1882|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>G|||||1060|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>G|||||757|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>G|||||122|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26442G>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.123C>G||||||
1	569881	.	C	A	107.11	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>A|||||3818|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>A|||||1885|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>A|||||1063|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>A|||||760|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>A|||||125|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26445G>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.126C>A||||||
1	569896	.	A	G	289.26	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3833|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||1900|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||1078|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||775|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||140|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26460T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.141A>G||||||
1	569914	.	C	T	5.9	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3851|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||1918|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1096|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||793|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||158|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26478G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.159C>T||||||
1	569933	.	G	A	5640.01	.	AC=110;ANN=A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3870|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1937|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||1115|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||812|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||177|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26497C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.178G>A||||||
1	569983	.	G	A	5862.85	.	AC=57;ANN=A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3920|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||1987|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||1165|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||862|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||227|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26547C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.228G>A||||||
1	569998	.	C	T	429.45	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||3935|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||2002|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1180|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||877|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||242|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26562G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.243C>T||||||
1	570002	.	A	G	379.34	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||3939|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||2006|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||1184|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||881|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||246|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26566T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.247A>G||||||
1	570026	.	G	A	255.41	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||3963|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||2030|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||1208|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||905|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||270|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26590C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.271G>A||||||
1	570058	.	T	C	16.95	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||3995|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||2062|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||1240|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||937|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>C|||||302|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26622A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.303T>C||||||
1	570076	.	T	C	1377.94	.	AC=63;ANN=C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||4013|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||2080|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||1258|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||955|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>C|||||320|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26640A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.321T>C||||||
1	570094	.	G	A	382.92	.	AC=32;ANN=A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||4031|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||2098|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||1276|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||973|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||338|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26658C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.339G>A||||||
1	570097	.	A	G	5928.56	.	AC=63;ANN=G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||4034|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||2101|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||1279|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||976|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||341|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26661T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.342A>G||||||
1	570103	.	G	A	3755.45	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||4040|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||2107|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||1285|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||982|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||347|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26667C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.348G>A||||||
1	570106	.	C	T	440.84	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||4043|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||2110|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1288|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||985|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||350|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26670G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.351C>T||||||
1	570178	.	G	A	6663.87	.	AC=68;ANN=A|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>A|||||4115|,A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||2182|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||1360|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||1057|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||422|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26742C>T||||||,A|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.423G>A||||||
1	570231	.	T	C	381.3	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||4168|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||2235|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||1413|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||1110|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>C|||||475|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26795A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.476T>C||||||
1	570247	.	T	C	23.91	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||4184|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||2251|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||1429|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||1126|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>C|||||491|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26811A>G||||||,C|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.492T>C||||||
1	570254	.	A	G	87.3	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044A>G|||||4191|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||2258|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||1436|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||1133|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||498|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26818T>C||||||,G|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.499A>G||||||
1	570277	.	C	T	46.14	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||4214|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||2281|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1459|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||1156|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||521|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26841G>A||||||,T|non_coding_exon_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene|1/1|n.522C>T||||||
1	570337	.	G	T	45.34	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044G>T|||||4274|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>T|||||2341|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>T|||||1519|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>T|||||1216|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>T|||||581|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547G>T|||||35|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-26901C>A||||||
1	570573	.	T	G	39.99	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>G|||||4510|,G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>G|||||2577|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>G|||||1755|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>G|||||1452|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>G|||||817|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547T>G|||||271|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-27137A>C||||||
1	570638	.	T	C	1527.59	.	AC=75;ANN=C|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044T>C|||||4575|,C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||2642|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||1820|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||1517|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>C|||||882|,C|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547T>C|||||336|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-27202A>G||||||
1	570663	.	C	T	130.39	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|MTND2P28|ENSG00000225630|transcript|ENST00000457540|unprocessed_pseudogene||n.*1044C>T|||||4600|,T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||2667|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||1845|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||1542|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||907|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>T|||||361|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-27227G>A||||||
1	571491	.	C	G	1150.85	.	AC=58;ANN=G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>G|||||3495|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>G|||||2673|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>G|||||2370|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>G|||||1735|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>G|||||1189|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28055G>C||||||
1	571590	.	A	G	225.45	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||3594|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||2772|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||2469|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||1834|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>G|||||1288|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28154T>C||||||
1	571623	.	T	G	2023.37	.	AC=91;ANN=G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>G|||||3627|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>G|||||2805|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>G|||||2502|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>G|||||1867|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547T>G|||||1321|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28187A>C||||||
1	571629	.	T	C	5029.36	.	AC=98;ANN=C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||3633|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||2811|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||2508|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>C|||||1873|,C|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547T>C|||||1327|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28193A>G||||||
1	571646	.	G	A	433.87	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||3650|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||2828|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||2525|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||1890|,A|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547G>A|||||1344|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28210C>T||||||
1	571761	.	A	G	1635.62	.	AC=85;ANN=G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||3765|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||2943|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||2640|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||2005|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>G|||||1459|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28325T>C||||||
1	571831	.	A	C	531.34	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>C|||||3835|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>C|||||3013|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>C|||||2710|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>C|||||2075|,C|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>C|||||1529|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28395T>G||||||
1	571874	.	A	G	1241.93	.	AC=50;ANN=G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||3878|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||3056|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||2753|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||2118|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>G|||||1572|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28438T>C||||||
1	571884	.	C	T	1656.94	.	AC=48;ANN=T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||3888|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||3066|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||2763|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||2128|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>T|||||1582|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28448G>A||||||
1	571885	.	G	A	243.82	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||3889|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||3067|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||2764|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||2129|,A|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547G>A|||||1583|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28449C>T||||||
1	571893	.	C	A	1763.6	.	AC=71;ANN=A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>A|||||3897|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>A|||||3075|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>A|||||2772|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>A|||||2137|,A|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>A|||||1591|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28457G>T||||||
1	571905	.	T	C	128.45	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543T>C|||||3909|,C|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682T>C|||||3087|,C|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207T>C|||||2784|,C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681T>C|||||2149|,C|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547T>C|||||1603|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28469A>G||||||
1	571923	.	G	T	374.65	.	AC=28;ANN=T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>T|||||3927|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>T|||||3105|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>T|||||2802|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>T|||||2167|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547G>T|||||1621|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28487C>A||||||
1	572169	.	G	A	544.6	.	AC=38;ANN=A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||4173|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||3351|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||3048|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||2413|,A|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547G>A|||||1867|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28733C>T||||||
1	572182	.	C	A	54.87	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>A|||||4186|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>A|||||3364|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>A|||||3061|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>A|||||2426|,A|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>A|||||1880|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28746G>T||||||
1	572318	.	G	A	122.73	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543G>A|||||4322|,A|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682G>A|||||3500|,A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||3197|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||2562|,A|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547G>A|||||2016|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28882C>T||||||
1	572326	.	A	G	114.33	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||4330|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||3508|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||3205|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||2570|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>G|||||2024|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28890T>C||||||
1	572337	.	C	T	11.29	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543C>T|||||4341|,T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||3519|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||3216|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||2581|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>T|||||2035|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-28901G>A||||||
1	572668	.	A	G	18.17	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|hsa-mir-6723|ENSG00000237973|transcript|ENST00000414273|unprocessed_pseudogene||n.*1543A>G|||||4672|,G|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682A>G|||||3850|,G|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207A>G|||||3547|,G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||2912|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>G|||||2366|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-29232T>C||||||
1	573063	.	C	T	32.2	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||4245|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||3942|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||3307|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>T|||||2761|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-29627G>A||||||
1	573770	.	C	T	204.05	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.7|ENSG00000229344|transcript|ENST00000427426|unprocessed_pseudogene||n.*682C>T|||||4952|,T|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207C>T|||||4649|,T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||4014|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>T|||||3468|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-30334G>A||||||
1	573820	.	G	A	205.69	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|MTATP8P1|ENSG00000240409|transcript|ENST00000467115|unprocessed_pseudogene||n.*207G>A|||||4699|,A|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681G>A|||||4064|,A|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547G>A|||||3518|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-30384C>T||||||
1	574151	rs74047006	A	T	2484.44	.	AC=65;ANN=T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>T|||||4395|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>T|||||3849|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-30715T>A||||||
1	574230	.	C	T	320.89	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681C>T|||||4474|,T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>T|||||3928|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-30794G>A||||||
1	574329	.	A	G	41.84	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||4573|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>G|||||4027|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-30893T>C||||||
1	574350	.	A	C	40.91	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>C|||||4594|,C|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>C|||||4048|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-30914T>G||||||
1	574577	.	A	G	134.26	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|MTATP6P1|ENSG00000248527|transcript|ENST00000514057|unprocessed_pseudogene||n.*681A>G|||||4821|,G|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547A>G|||||4275|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-31141T>C||||||
1	575135	.	C	T	4.65	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.11|ENSG00000198744|transcript|ENST00000416718|unprocessed_pseudogene||n.*547C>T|||||4833|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-31699G>A||||||
1	575708	.	G	A	21.91	.	AC=2;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-32272C>T||||||
1	575806	.	T	C	259.57	.	AC=10;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-32370A>G||||||
1	576542	.	T	C	1095.69	.	AC=69;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-33106A>G||||||
1	576589	.	C	T	1648.17	.	AC=63;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-33153G>A||||||
1	576643	.	G	A	1913.59	.	AC=86;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-33207C>T||||||
1	576688	.	G	A	215.63	.	AC=17;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-33252C>T||||||
1	577193	.	G	A	28.88	.	AC=3;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-33757C>T||||||
1	577358	.	C	T	41.31	.	AC=5;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-33922G>A||||||
1	577485	.	G	C	12.85	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-34049C>G||||||
1	577838	.	C	A	59.64	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-34402G>T||||||
1	577946	.	G	A	29.14	.	AC=3;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-34510C>T||||||
1	578258	.	C	G	26.02	.	AC=5;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-34822G>C||||||
1	578432	.	A	G	303.79	.	AC=25;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-34996T>C||||||
1	578523	.	C	T	201.86	.	AC=10;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-35087G>A||||||
1	578538	.	G	A	35.84	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-35102C>T||||||
1	578599	.	C	T	119.79	.	AC=6;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-35163G>A||||||
1	578651	.	T	C	94.32	.	AC=7;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-35215A>G||||||
1	579588	.	C	A	27.58	.	AC=3;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-36152G>T||||||
1	579812	.	C	T	34.52	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-36376G>A||||||
1	580511	.	G	T	27.77	.	AC=2;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-37075C>A||||||
1	580687	.	A	G	49.06	.	AC=5;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-37251T>C||||||
1	580688	.	G	A	58.53	.	AC=2;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-37252C>T||||||
1	581462	.	T	C	61.5	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-38026A>G||||||
1	581468	.	T	C	138.15	.	AC=2;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-38032A>G||||||
1	581674	.	C	T	480.33	.	AC=17;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-38238G>A||||||
1	581812	.	G	A	251.63	.	AC=8;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-38376C>T||||||
1	582453	.	T	C	16.22	.	AC=6;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39017A>G||||||
1	582518	.	G	A	321.84	.	AC=38;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39082C>T||||||
1	582729	.	T	A	248.24	.	AC=19;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39293A>T||||||
1	582742	.	G	T	27.98	.	AC=4;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39306C>A||||||
1	582850	.	G	A	591.2	.	AC=47;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39414C>T||||||
1	582925	.	A	G	749.76	.	AC=47;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39489T>C||||||
1	582929	.	A	C	11.25	.	AC=4;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39493T>G||||||
1	582930	.	C	T	1127.42	.	AC=72;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39494G>A||||||
1	583049	.	C	A	15.53	.	AC=3;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39613G>T||||||
1	583374	.	C	T	70.93	.	AC=7;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39938G>A||||||
1	583375	.	G	A	154.17	.	AC=10;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-39939C>T||||||
1	584084	.	A	C	30.9	.	AC=4;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-40648T>G||||||
1	584358	.	T	A	24.31	.	AC=3;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-40922A>T||||||
1	584364	.	C	T	82.0	.	AC=10;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-40928G>A||||||
1	584922	.	T	C	31.68	.	AC=6;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-41486A>G||||||
1	585048	.	G	A	17.92	.	AC=3;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-41612C>T||||||
1	585140	.	G	A	113.39	.	AC=9;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-41704C>T||||||
1	585459	.	C	A	200.13	.	AC=22;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42023G>T||||||
1	585589	.	C	A	42.21	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42153G>T||||||
1	585592	.	G	A	34.38	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42156C>T||||||
1	585708	.	A	G	324.75	.	AC=30;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42272T>C||||||
1	585711	.	A	G	101.26	.	AC=12;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42275T>C||||||
1	585741	.	G	T	175.47	.	AC=18;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42305C>A||||||
1	585793	.	C	T	1498.63	.	AC=106;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42357G>A||||||
1	585842	.	A	G	31.58	.	AC=7;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42406T>C||||||
1	585859	.	G	A	49.48	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42423C>T||||||
1	585863	.	C	T	27.68	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42427G>A||||||
1	585997	.	G	A	18.34	.	AC=2;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42561C>T||||||
1	586051	.	G	A	17.51	.	AC=4;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42615C>T||||||
1	586116	.	C	A	459.22	.	AC=22;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42680G>T||||||
1	586162	.	G	A	131.23	.	AC=20;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42726C>T||||||
1	586195	rs55870831	G	T	30.29	.	AC=7;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-42759C>A||||||
1	587310	.	C	T	409.12	.	AC=32;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-43874G>A||||||
1	587333	.	T	C	720.83	.	AC=51;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-43897A>G||||||
1	587365	.	A	C	558.62	.	AC=48;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-43929T>G||||||
1	587485	.	A	G	45.89	.	AC=6;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-44049T>C||||||
1	587774	.	G	A	653.76	.	AC=45;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-44338C>T||||||
1	588788	.	C	T	901.06	.	AC=54;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45352G>A||||||
1	588896	.	C	T	1243.75	.	AC=68;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45460G>A||||||
1	589066	.	G	T	26.47	.	AC=2;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45630C>A||||||
1	589082	.	G	A	2635.45	.	AC=97;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45646C>T||||||
1	589084	.	G	A	2683.83	.	AC=101;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45648C>T||||||
1	589146	.	A	G	478.38	.	AC=32;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45710T>C||||||
1	589148	.	A	G	63.64	.	AC=9;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45712T>C||||||
1	589293	.	A	C	20.54	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45857T>G||||||
1	589404	.	C	G	57.59	.	AC=7;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-45968G>C||||||
1	590431	.	A	G	9.17	.	AC=1;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-46995T>C||||||
1	591205	.	T	C	12.89	.	AC=2;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-47769A>G||||||
1	591818	.	G	A	250.67	.	AC=16;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48382C>T||||||
1	591999	.	C	T	305.85	.	AC=18;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48563G>A||||||
1	592007	.	G	A	595.45	.	AC=34;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48571C>T||||||
1	592051	rs79746121	C	T	1111.32	.	AC=41;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48615G>A||||||
1	592052	.	G	A	20.3	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48616C>T||||||
1	592060	.	T	C	1218.3	.	AC=46;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48624A>G||||||
1	592075	rs6681105	T	C	158.54	.	AC=8;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48639A>G||||||
1	592088	.	T	C	14.14	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48652A>G||||||
1	592146	rs12064670	C	A	267.55	.	AC=14;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48710G>T||||||
1	592268	.	G	T	1290.78	.	AC=55;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48832C>A||||||
1	592297	.	C	T	1403.89	.	AC=39;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48861G>A||||||
1	592305	rs11578847	C	T	67.31	.	AC=7;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48869G>A||||||
1	592317	.	C	T	249.27	.	AC=27;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48881G>A||||||
1	592355	.	T	C	6.25	.	AC=2;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-48919A>G||||||
1	592685	.	T	C	158.51	.	AC=11;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49249A>G||||||
1	592789	.	C	T	82.67	.	AC=6;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49353G>A||||||
1	592847	.	G	A	144.91	.	AC=12;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49411C>T||||||
1	592858	.	C	A	218.36	.	AC=18;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49422G>T||||||
1	592909	.	C	T	75.8	.	AC=8;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49473G>A||||||
1	592935	.	G	C	68.72	.	AC=8;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49499C>G||||||
1	593023	.	A	C	305.44	.	AC=22;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49587T>G||||||
1	593362	.	A	G	56.02	.	AC=7;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49926T>C||||||
1	593372	.	A	G	18.84	.	AC=3;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-49936T>C||||||
1	593523	.	A	T	325.07	.	AC=25;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50087T>A||||||
1	593593	.	G	C	356.68	.	AC=23;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50157C>G||||||
1	593640	.	G	A	81.61	.	AC=8;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50204C>T||||||
1	593661	.	A	G	238.43	.	AC=26;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50225T>C||||||
1	593665	.	A	C	169.81	.	AC=19;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50229T>G||||||
1	593714	.	T	G	497.28	.	AC=32;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50278A>C||||||
1	593777	.	T	C	270.0	.	AC=21;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50341A>G||||||
1	593789	.	C	G	35.31	.	AC=6;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50353G>C||||||
1	593813	.	G	A	214.6	.	AC=20;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50377C>T||||||
1	594080	.	T	C	278.37	.	AC=19;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50644A>G||||||
1	594263	.	A	G	581.88	.	AC=30;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50827T>C||||||
1	594318	.	A	G	169.18	.	AC=15;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50882T>C||||||
1	594340	.	A	G	18.38	.	AC=3;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50904T>C||||||
1	594363	.	T	C	132.63	.	AC=13;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-50927A>G||||||
1	594502	.	T	G	347.96	.	AC=18;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-51066A>C||||||
1	594560	.	A	C	46.83	.	AC=7;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-51124T>G||||||
1	594983	.	T	G	45.62	.	AC=5;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-51547A>C||||||
1	595382	.	G	T	37.28	.	AC=7;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-51946C>A||||||
1	595474	.	A	G	62.41	.	AC=1;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52038T>C||||||
1	595572	.	G	A	237.14	.	AC=21;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52136C>T||||||
1	595820	.	G	C	120.41	.	AC=11;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52384C>G||||||
1	595837	.	G	A	122.88	.	AC=15;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52401C>T||||||
1	595863	.	T	A	94.39	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52427A>T||||||
1	595904	.	A	G	22.28	.	AC=2;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52468T>C||||||
1	596086	.	T	C	202.91	.	AC=16;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52650A>G||||||
1	596212	.	A	T	27.57	.	AC=1;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52776T>A||||||
1	596266	.	G	A,C	189.12	.	AC=16;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52830C>T||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52830C>G||||||
1	596278	.	G	A	36.45	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52842C>T||||||
1	596314	.	T	C	112.32	.	AC=14;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52878A>G||||||
1	596373	.	T	C	4570.58	.	AC=113;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-52937A>G||||||
1	596556	.	A	T	85.29	.	AC=6;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-53120T>A||||||
1	596661	.	T	C	390.67	.	AC=19;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-53225A>G||||||
1	596771	.	C	A	45.75	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-53335G>T||||||
1	596790	.	T	A	12.16	.	AC=2;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-53354A>T||||||
1	596838	.	T	C	378.54	.	AC=19;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-53402A>G||||||
1	597120	.	T	C	186.33	.	AC=13;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-53684A>G||||||
1	597511	.	G	T	67.54	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-54075C>A||||||
1	597681	.	T	C	39.03	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-54245A>G||||||
1	597931	.	A	G	30.02	.	AC=4;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-54495T>C||||||
1	598152	.	G	C	9.17	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-54716C>G||||||
1	598397	.	T	C	49.62	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-54961A>G||||||
1	598738	.	T	C	258.52	.	AC=17;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-55302A>G||||||
1	598770	.	T	C	488.71	.	AC=35;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-55334A>G||||||
1	598833	.	T	C	7701.32	.	AC=116;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-55397A>G||||||
1	598982	.	T	C	192.02	.	AC=14;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-55546A>G||||||
1	599074	.	T	C	43.07	.	AC=5;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-55638A>G||||||
1	599209	.	A	G	233.59	.	AC=23;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-55773T>C||||||
1	599363	.	A	G	64.37	.	AC=7;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.170-55927T>C||||||
1	599425	.	G	A	130.39	.	AC=11;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+55987C>T||||||
1	599446	.	A	C	118.23	.	AC=4;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+55966T>G||||||
1	599982	.	A	G	22.49	.	AC=1;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+55430T>C||||||
1	600032	.	T	A	16.97	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+55380A>T||||||
1	600274	.	A	C	60.0	.	AC=11;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+55138T>G||||||
1	600318	.	A	G	846.15	.	AC=36;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+55094T>C||||||
1	600478	rs114979547	G	A	5795.44	.	AC=102;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54934C>T||||||
1	600495	.	G	C	1588.92	.	AC=50;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54917C>G||||||
1	600523	.	T	C	461.76	.	AC=16;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54889A>G||||||
1	601055	.	T	C	44.71	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54357A>G||||||
1	601068	.	T	A	15.17	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54344A>T||||||
1	601141	.	C	T	2469.85	.	AC=87;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54271G>A||||||
1	601153	.	T	A	408.34	.	AC=39;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54259A>T||||||
1	601180	.	G	A	303.27	.	AC=30;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54232C>T||||||
1	601408	.	G	A	506.58	.	AC=42;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+54004C>T||||||
1	601507	.	A	G	19.86	.	AC=1;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53905T>C||||||
1	601550	rs78266750	G	A	63.61	.	AC=11;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53862C>T||||||
1	601576	.	G	A	264.89	.	AC=22;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53836C>T||||||
1	601583	rs79221329	G	A	1759.49	.	AC=32;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53829C>T||||||
1	601602	.	G	C	62.33	.	AC=4;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53810C>G||||||
1	601635	.	C	A	7171.91	.	AC=142;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53777G>T||||||
1	601747	.	G	A	167.34	.	AC=8;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53665C>T||||||
1	601778	.	C	T	272.22	.	AC=16;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53634G>A||||||
1	601841	.	G	C	2450.75	.	AC=134;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53571C>G||||||
1	601933	.	C	T	743.22	.	AC=42;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53479G>A||||||
1	601965	.	T	C	12.74	.	AC=2;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53447A>G||||||
1	601975	.	C	A	657.05	.	AC=21;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53437G>T||||||
1	601995	.	T	C	450.8	.	AC=13;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53417A>G||||||
1	602101	.	G	A	1681.9	.	AC=86;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53311C>T||||||
1	602383	.	G	A	1792.2	.	AC=94;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+53029C>T||||||
1	602938	.	A	G	107.17	.	AC=5;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+52474T>C||||||
1	602964	.	C	T	81.72	.	AC=12;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+52448G>A||||||
1	603010	.	C	A	34.38	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+52402G>T||||||
1	603042	.	G	C	44.26	.	AC=7;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+52370C>G||||||
1	603331	.	T	C	75.92	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+52081A>G||||||
1	603354	rs115857668	G	T	1079.65	.	AC=54;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+52058C>A||||||
1	603454	.	G	A	57.49	.	AC=14;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51958C>T||||||
1	603484	.	T	C	112.46	.	AC=15;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51928A>G||||||
1	603505	.	A	C	260.08	.	AC=23;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51907T>G||||||
1	603515	.	C	A	3214.14	.	AC=79;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51897G>T||||||
1	603516	.	C	A	3218.91	.	AC=78;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51896G>T||||||
1	603569	.	C	T	102.85	.	AC=5;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51843G>A||||||
1	603589	.	A	C	63.11	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51823T>G||||||
1	603598	.	C	T	15.2	.	AC=5;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51814G>A||||||
1	603694	.	G	C	33.72	.	AC=2;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51718C>G||||||
1	603710	.	G	C	31.19	.	AC=1;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51702C>G||||||
1	603722	.	G	A	166.93	.	AC=16;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51690C>T||||||
1	603764	.	G	C	12.98	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51648C>G||||||
1	603783	.	C	A	208.95	.	AC=9;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51629G>T||||||
1	603874	.	A	G	446.03	.	AC=32;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51538T>C||||||
1	603900	.	C	T	161.23	.	AC=16;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51512G>A||||||
1	603938	rs61769313	C	T	8.03	.	AC=3;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51474G>A||||||
1	604031	.	A	G	96.12	.	AC=11;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51381T>C||||||
1	604060	.	A	G	61.41	.	AC=12;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51352T>C||||||
1	604070	.	G	A	529.9	.	AC=22;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51342C>T||||||
1	604223	.	G	C	93.34	.	AC=17;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51189C>G||||||
1	604266	.	T	C	1836.56	.	AC=104;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51146A>G||||||
1	604271	.	G	A	728.57	.	AC=60;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51141C>T||||||
1	604291	.	C	A	308.88	.	AC=35;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51121G>T||||||
1	604299	.	C	G	333.15	.	AC=24;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51113G>C||||||
1	604315	.	A	T	181.07	.	AC=28;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51097T>A||||||
1	604324	.	G	A	49.3	.	AC=4;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51088C>T||||||
1	604338	.	G	A	431.92	.	AC=34;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51074C>T||||||
1	604381	.	C	T	32.02	.	AC=1;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51031G>A||||||
1	604382	.	G	A	66.6	.	AC=9;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+51030C>T||||||
1	604459	.	G	A	59.69	.	AC=11;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50953C>T||||||
1	604478	.	G	A	30.97	.	AC=4;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50934C>T||||||
1	604492	.	G	A	275.86	.	AC=18;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50920C>T||||||
1	604521	.	G	A	26.14	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50891C>T||||||
1	604541	.	G	T	34.8	.	AC=1;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50871C>A||||||
1	604568	.	A	G	278.03	.	AC=20;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50844T>C||||||
1	604702	.	A	G	28.38	.	AC=1;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50710T>C||||||
1	604752	.	G	A	315.84	.	AC=21;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50660C>T||||||
1	604780	.	C	A	117.38	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50632G>T||||||
1	604799	.	A	G	436.09	.	AC=26;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50613T>C||||||
1	604844	.	G	A	418.27	.	AC=35;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50568C>T||||||
1	604954	.	A	G	42.08	.	AC=3;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50458T>C||||||
1	605060	.	G	A	271.06	.	AC=16;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50352C>T||||||
1	605185	.	G	A	69.22	.	AC=8;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50227C>T||||||
1	605223	.	G	C	8.46	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>C|||||4999|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50189C>G||||||
1	605229	.	G	A	287.95	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>A|||||4993|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50183C>T||||||
1	605260	.	G	T	138.02	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>T|||||4962|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50152C>A||||||
1	605291	.	G	A	63.66	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>A|||||4931|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50121C>T||||||
1	605382	.	C	G	35.21	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>G|||||4840|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50030G>C||||||
1	605399	.	C	G	69.15	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>G|||||4823|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+50013G>C||||||
1	605422	.	C	T	395.77	.	AC=33;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||4800|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49990G>A||||||
1	605483	.	A	G	18.88	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1A>G|||||4739|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49929T>C||||||
1	605612	.	C	A	19.73	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>A|||||4610|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49800G>T||||||
1	605650	.	C	T	386.48	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||4572|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49762G>A||||||
1	605680	.	A	G	250.25	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1A>G|||||4542|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49732T>C||||||
1	605876	.	C	T	202.34	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||4346|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49536G>A||||||
1	606036	.	C	T	28.58	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||4186|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49376G>A||||||
1	606053	.	T	G	729.93	.	AC=42;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>G|||||4169|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49359A>C||||||
1	606065	.	C	T	255.71	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||4157|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49347G>A||||||
1	606228	.	A	T	89.46	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1A>T|||||3994|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49184T>A||||||
1	606302	.	C	A	742.4	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>A|||||3920|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49110G>T||||||
1	606332	.	T	C	76.71	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>C|||||3890|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+49080A>G||||||
1	606518	.	C	A	351.57	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>A|||||3704|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+48894G>T||||||
1	606549	.	C	T	621.08	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||3673|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+48863G>A||||||
1	607043	.	T	A	468.56	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>A|||||3179|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+48369A>T||||||
1	607204	.	A	G	588.2	.	AC=40;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1A>G|||||3018|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+48208T>C||||||
1	607257	.	G	A	45.9	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>A|||||2965|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+48155C>T||||||
1	607446	.	A	G	89.1	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1A>G|||||2776|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+47966T>C||||||
1	607507	.	G	A	50.89	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>A|||||2715|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+47905C>T||||||
1	607605	.	A	G	154.2	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1A>G|||||2617|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+47807T>C||||||
1	607705	.	G	A	576.63	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>A|||||2517|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+47707C>T||||||
1	607730	.	C	G	69.65	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>G|||||2492|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+47682G>C||||||
1	607906	.	T	C	69.59	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>C|||||2316|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+47506A>G||||||
1	608130	.	C	T	89.89	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||2092|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+47282G>A||||||
1	608898	.	C	T	375.22	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||1324|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46514G>A||||||
1	609032	.	T	C	16.86	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>C|||||1190|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46380A>G||||||
1	609076	.	C	T	308.49	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||1146|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46336G>A||||||
1	609126	.	C	G	21.61	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>G|||||1096|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46286G>C||||||
1	609196	.	T	G	203.04	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>G|||||1026|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46216A>C||||||
1	609197	.	T	C	23.9	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>C|||||1025|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46215A>G||||||
1	609204	.	A	T	249.62	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1A>T|||||1018|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46208T>A||||||
1	609317	.	C	T	534.46	.	AC=39;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||905|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+46095G>A||||||
1	609668	.	G	A	168.24	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>A|||||554|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45744C>T||||||
1	609696	.	C	G	34.73	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>G|||||526|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45716G>C||||||
1	609942	.	T	C	95.4	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1T>C|||||280|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45470A>G||||||
1	609951	.	C	T	47.48	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||271|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45461G>A||||||
1	609972	.	C	T	10.36	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>T|||||250|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45440G>A||||||
1	610065	.	C	G	52.0	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1C>G|||||157|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45347G>C||||||
1	610194	.	G	A	6.22	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.-1G>A|||||28|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45218C>T||||||
1	610243	.	G	A	125.5	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+45169C>T||||||,A|non_coding_exon_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene|1/1|n.22G>A||||||
1	610489	.	C	T	181.0	.	AC=18;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44923G>A||||||,T|non_coding_exon_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene|1/1|n.268C>T||||||
1	610516	.	C	A	76.24	.	AC=9;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44896G>T||||||,A|non_coding_exon_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene|1/1|n.295C>A||||||
1	610535	.	G	A	49.51	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44877C>T||||||,A|non_coding_exon_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene|1/1|n.314G>A||||||
1	610607	.	C	T	68.27	.	AC=9;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44805G>A||||||,T|non_coding_exon_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene|1/1|n.386C>T||||||
1	610686	.	C	T	218.56	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>T|||||41|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44726G>A||||||
1	610881	.	T	C	238.4	.	AC=17;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||236|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44531A>G||||||
1	610918	.	A	G	64.46	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424A>G|||||273|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44494T>C||||||
1	610949	.	G	A	136.88	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||304|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44463C>T||||||
1	611003	.	C	T	162.11	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>T|||||358|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44409G>A||||||
1	611163	.	G	A	133.38	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||518|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44249C>T||||||
1	611258	.	T	C	229.76	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||613|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+44154A>G||||||
1	611459	.	T	C	25.43	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||814|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43953A>G||||||
1	611649	.	C	G	70.53	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>G|||||1004|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43763G>C||||||
1	611884	.	G	A	62.13	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||1239|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43528C>T||||||
1	612130	.	C	G	300.64	.	AC=22;ANN=G|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>G|||||1485|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43282G>C||||||
1	612135	.	T	A	92.78	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>A|||||1490|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43277A>T||||||
1	612148	.	G	A	28.86	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||1503|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43264C>T||||||
1	612225	.	T	A	21.72	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>A|||||1580|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43187A>T||||||
1	612286	.	G	A	49.05	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||1641|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+43126C>T||||||
1	612442	.	G	A	294.41	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||1797|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42970C>T||||||
1	612492	.	T	C	28.11	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||1847|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42920A>G||||||
1	612581	.	C	T	13.21	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>T|||||1936|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42831G>A||||||
1	612629	.	T	C	224.96	.	AC=23;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||1984|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42783A>G||||||
1	612670	.	A	G	169.52	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424A>G|||||2025|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42742T>C||||||
1	612742	.	T	C	262.48	.	AC=24;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||2097|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42670A>G||||||
1	612758	.	T	C	48.8	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||2113|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42654A>G||||||
1	612934	.	T	C	274.3	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||2289|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42478A>G||||||
1	612980	.	C	T	194.0	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>T|||||2335|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42432G>A||||||
1	613008	.	C	T	18.49	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>T|||||2363|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42404G>A||||||
1	613186	.	T	C	27.27	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||2541|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42226A>G||||||
1	613247	.	G	A	288.04	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||2602|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42165C>T||||||
1	613248	.	G	A	208.31	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||2603|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42164C>T||||||
1	613300	.	A	G	95.91	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424A>G|||||2655|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+42112T>C||||||
1	613415	.	T	C	20.97	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||2770|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+41997A>G||||||
1	613485	.	T	C	115.0	.	AC=15;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424T>C|||||2840|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+41927A>G||||||
1	613530	.	A	C	55.81	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424A>C|||||2885|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+41882T>G||||||
1	613666	.	A	C	71.19	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424A>C|||||3021|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+41746T>G||||||
1	614239	.	G	A	54.14	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||3594|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+41173C>T||||||
1	614262	.	G	T	63.81	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>T|||||3617|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+41150C>A||||||
1	614409	.	C	A	64.02	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>A|||||3764|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+41003G>T||||||
1	614535	.	A	C	34.99	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424A>C|||||3890|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+40877T>G||||||
1	614725	.	G	A	16.54	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||4080|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+40687C>T||||||
1	614769	.	G	A	75.29	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>A|||||4124|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+40643C>T||||||
1	614872	.	C	G	78.84	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424C>G|||||4227|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+40540G>C||||||
1	615262	.	G	T	20.8	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424G>T|||||4617|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+40150C>A||||||
1	615408	.	A	G	33.97	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|WBP1LP6|ENSG00000268663|transcript|ENST00000438434|processed_pseudogene||n.*424A>G|||||4763|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+40004T>C||||||
1	615650	.	A	C	82.47	.	AC=10;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+39762T>G||||||
1	615749	.	G	A	72.09	.	AC=11;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+39663C>T||||||
1	616156	.	A	G	763.81	.	AC=35;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>C|||||4903|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+39256T>C||||||
1	616462	.	T	C	84.25	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>G|||||4597|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38950A>G||||||
1	616483	.	T	A	53.5	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>T|||||4576|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38929A>T||||||
1	616512	.	A	G	80.29	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>C|||||4547|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38900T>C||||||
1	616526	.	C	T	139.9	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>A|||||4533|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38886G>A||||||
1	616530	.	T	C	50.05	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>G|||||4529|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38882A>G||||||
1	616559	.	G	A	617.65	.	AC=32;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>T|||||4500|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38853C>T||||||
1	616691	.	G	A	142.82	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>T|||||4368|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38721C>T||||||
1	616932	.	G	A	51.69	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>T|||||4127|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38480C>T||||||
1	617179	.	T	A	66.39	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>T|||||3880|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+38233A>T||||||
1	617489	.	A	G	249.87	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>C|||||3570|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+37923T>C||||||
1	617878	.	C	T	352.39	.	AC=26;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>A|||||3181|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+37534G>A||||||
1	617945	.	C	G	30.42	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>C|||||3114|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+37467G>C||||||
1	618086	.	A	G	189.81	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>C|||||2973|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+37326T>C||||||
1	618174	.	C	T	124.74	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>A|||||2885|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+37238G>A||||||
1	618386	.	T	C	1114.75	.	AC=82;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>G|||||2673|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+37026A>G||||||
1	618446	.	G	A	909.29	.	AC=40;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>T|||||2613|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36966C>T||||||
1	618454	.	C	G	78.3	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>C|||||2605|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36958G>C||||||
1	618463	rs114496243	G	A	14113.34	.	AC=206;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>T|||||2596|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36949C>T||||||
1	618467	.	G	A	1464.06	.	AC=52;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>T|||||2592|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36945C>T||||||
1	618496	.	T	C	387.47	.	AC=25;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>G|||||2563|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36916A>G||||||
1	618547	.	G	A	360.34	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>T|||||2512|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36865C>T||||||
1	618579	.	T	G	14.18	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>C|||||2480|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36833A>C||||||
1	618617	.	A	T	58.51	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>A|||||2442|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36795T>A||||||
1	618678	.	C	T	35.38	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>A|||||2381|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36734G>A||||||
1	619187	.	G	C	161.44	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958C>G|||||1872|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+36225C>G||||||
1	619485	.	T	A	12.77	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>T|||||1574|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35927A>T||||||
1	619570	.	C	T	145.72	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>A|||||1489|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35842G>A||||||
1	619593	.	C	T	336.31	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>A|||||1466|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35819G>A||||||
1	619924	.	A	C	50.59	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>G|||||1135|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35488T>G||||||
1	620046	.	T	C	83.09	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>G|||||1013|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35366A>G||||||
1	620068	.	C	A	110.63	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958G>T|||||991|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35344G>T||||||
1	620088	.	A	T	212.83	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>A|||||971|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35324T>A||||||
1	620222	.	A	G	77.61	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>C|||||837|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35190T>C||||||
1	620321	.	T	C	55.44	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>G|||||738|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+35091A>G||||||
1	620625	.	A	C	42.88	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>G|||||434|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+34787T>G||||||
1	620682	.	T	A	26.05	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958A>T|||||377|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+34730A>T||||||
1	620966	.	A	T	245.27	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.*958T>A|||||93|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+34446T>A||||||
1	621106	.	C	T	53.2	.	AC=8;ANN=T|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.929G>A|p.Arg310Lys|948/995|929/939|310/312||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+34306G>A||||||
1	621257	.	G	A	23.33	.	AC=4;ANN=A|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.778C>T|p.Arg260Trp|797/995|778/939|260/312||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+34155C>T||||||
1	621380	.	C	T	88.37	.	AC=9;ANN=T|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.655G>A|p.Val219Ile|674/995|655/939|219/312||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+34032G>A||||||
1	621442	.	A	G	72.13	.	AC=10;ANN=G|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.593T>C|p.Met198Thr|612/995|593/939|198/312||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+33970T>C||||||
1	621487	.	C	T	8.39	.	AC=2;ANN=T|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.548G>A|p.Arg183Gln|567/995|548/939|183/312||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+33925G>A||||||
1	621536	.	C	G	147.14	.	AC=11;ANN=G|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.499G>C|p.Ala167Pro|518/995|499/939|167/312||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+33876G>C||||||
1	621716	.	C	T	59.82	.	AC=5;ANN=T|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.319G>A|p.Val107Ile|338/995|319/939|107/312||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+33696G>A||||||
1	621793	.	A	G	132.08	.	AC=15;ANN=G|missense_variant|MODERATE|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding|1/1|c.242T>C|p.Met81Thr|261/995|242/939|81/312||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+33619T>C||||||
1	622709	.	C	T	47.63	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20G>A|||||656|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+32703G>A||||||
1	622710	.	G	A	40.85	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>T|||||657|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+32702C>T||||||
1	623533	.	A	C	22.38	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20T>G|||||1480|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+31879T>G||||||
1	623804	.	T	C	132.13	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||1751|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+31608A>G||||||
1	623847	.	A	G	53.23	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20T>C|||||1794|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+31565T>C||||||
1	624288	.	G	C	185.49	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>G|||||2235|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+31124C>G||||||
1	624328	.	G	T	163.4	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>A|||||2275|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+31084C>A||||||
1	624815	.	C	T	87.54	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20G>A|||||2762|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30597G>A||||||
1	624837	.	T	C	14.51	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||2784|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30575A>G||||||
1	625129	.	C	G	94.06	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20G>C|||||3076|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30283G>C||||||
1	625199	.	C	T	71.95	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20G>A|||||3146|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30213G>A||||||
1	625258	.	G	A	40.36	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>T|||||3205|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30154C>T||||||
1	625313	.	A	C	293.97	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20T>G|||||3260|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30099T>G||||||
1	625342	.	C	T	406.82	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20G>A|||||3289|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30070G>A||||||
1	625346	.	T	C	87.32	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||3293|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30066A>G||||||
1	625371	.	T	C	375.75	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||3318|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30041A>G||||||
1	625392	.	T	C	1623.27	.	AC=69;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||3339|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+30020A>G||||||
1	625414	.	G	A	966.02	.	AC=76;ANN=A|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>T|||||3361|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29998C>T||||||
1	625435	.	T	C	330.25	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||3382|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29977A>G||||||
1	625440	.	A	C	5489.76	.	AC=112;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20T>G|||||3387|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29972T>G||||||
1	625443	.	G	A	253.69	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>T|||||3390|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29969C>T||||||
1	625478	.	G	T	1088.61	.	AC=53;ANN=T|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>A|||||3425|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29934C>A||||||
1	625652	.	G	C	32.3	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20C>G|||||3599|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29760C>G||||||
1	625724	.	A	G	205.4	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20T>C|||||3671|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29688T>C||||||
1	625812	.	A	G	166.38	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20T>C|||||3759|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29600T>C||||||
1	626196	.	T	C	73.13	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||4143|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29216A>G||||||
1	626321	rs77242874	A	G	179.47	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20T>C|||||4268|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+29091T>C||||||
1	626510	.	T	C	315.32	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20A>G|||||4457|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+28902A>G||||||
1	627016	.	C	T	35.12	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|OR4F16|ENSG00000185097|transcript|ENST00000332831|protein_coding||c.-20G>A|||||4963|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+28396G>A||||||
1	627393	.	G	A	21.33	.	AC=1;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+28019C>T||||||
1	627544	.	C	T	15.32	.	AC=2;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+27868G>A||||||
1	627709	.	T	C	23.45	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+27703A>G||||||
1	627788	.	T	G	11.12	.	AC=3;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+27624A>C||||||
1	627982	.	C	T	59.91	.	AC=5;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+27430G>A||||||
1	628140	.	T	C	133.3	.	AC=15;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+27272A>G||||||
1	628192	.	A	C	65.71	.	AC=10;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+27220T>G||||||
1	628198	.	A	C	51.68	.	AC=8;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+27214T>G||||||
1	628466	.	A	C	32.19	.	AC=3;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+26946T>G||||||
1	628570	.	C	A	71.36	.	AC=8;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+26842G>T||||||
1	630967	.	T	A	60.97	.	AC=6;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+24445A>T||||||
1	631316	.	A	G	142.11	.	AC=9;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+24096T>C||||||
1	631402	.	G	A	37.57	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+24010C>T||||||
1	631598	.	C	T	35.98	.	AC=5;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+23814G>A||||||
1	631956	.	A	G	46.46	.	AC=4;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+23456T>C||||||
1	632086	.	G	C	78.19	.	AC=8;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+23326C>G||||||
1	632121	.	A	C	142.44	.	AC=13;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+23291T>G||||||
1	632159	.	G	A	13.68	.	AC=5;ANN=A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+23253C>T||||||
1	632450	.	A	G	69.38	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>C|||||4866|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+22962T>C||||||
1	632708	.	C	G	20.43	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>C|||||4608|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+22704G>C||||||
1	632966	.	T	C	327.53	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||4350|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+22446A>G||||||
1	633277	.	C	T	71.33	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||4039|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+22135G>A||||||
1	633528	.	T	C	130.76	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||3788|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+21884A>G||||||
1	633582	.	C	T	110.45	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||3734|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+21830G>A||||||
1	633788	.	T	A	543.95	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>T|||||3528|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+21624A>T||||||
1	634409	.	C	T	60.41	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||2907|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||4656|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+21003G>A||||||
1	634443	.	G	T	38.86	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>A|||||2873|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>A|||||4622|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20969C>A||||||
1	634602	.	G	C	26.31	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>G|||||2714|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>G|||||4463|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20810C>G||||||
1	634616	.	C	T	20.4	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||2700|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||4449|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20796G>A||||||
1	634918	.	C	T	308.1	.	AC=22;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||2398|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||4147|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20494G>A||||||
1	634934	.	C	G	22.04	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>C|||||2382|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>C|||||4131|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20478G>C||||||
1	635005	.	C	T	28.85	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||2311|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||4060|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20407G>A||||||
1	635107	.	A	G	58.65	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>C|||||2209|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>C|||||3958|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20305T>C||||||
1	635279	.	A	G	136.75	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>C|||||2037|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>C|||||3786|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20133T>C||||||
1	635284	.	A	G	19.78	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>C|||||2032|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>C|||||3781|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20128T>C||||||
1	635362	.	A	C	14.05	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>G|||||1954|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>G|||||3703|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20050T>G||||||
1	635388	.	C	A	18.86	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>T|||||1928|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>T|||||3677|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+20024G>T||||||
1	635452	.	G	C	12.96	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>G|||||1864|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>G|||||3613|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19960C>G||||||
1	635535	.	C	T	255.33	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||1781|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||3530|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19877G>A||||||
1	635660	.	C	G	87.93	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>C|||||1656|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>C|||||3405|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19752G>C||||||
1	635665	.	T	C	13.88	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||1651|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>G|||||3400|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19747A>G||||||
1	635801	.	G	A	134.45	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>T|||||1515|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>T|||||3264|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19611C>T||||||
1	635970	.	A	C	176.74	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>G|||||1346|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>G|||||3095|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19442T>G||||||
1	635976	.	C	T	154.52	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||1340|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||3089|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19436G>A||||||
1	635982	.	C	T	159.15	.	AC=17;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||1334|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||3083|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19430G>A||||||
1	635986	.	A	G	12.57	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>C|||||1330|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>C|||||3079|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19426T>C||||||
1	636021	rs75919195	G	A	1646.09	.	AC=104;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>T|||||1295|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>T|||||3044|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19391C>T||||||
1	636022	.	T	C	177.89	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||1294|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>G|||||3043|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19390A>G||||||
1	636044	.	G	A	4396.59	.	AC=184;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>T|||||1272|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>T|||||3021|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19368C>T||||||
1	636047	.	A	T	402.39	.	AC=25;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>A|||||1269|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>A|||||3018|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19365T>A||||||
1	636052	.	T	A	303.7	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>T|||||1264|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>T|||||3013|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19360A>T||||||
1	636110	.	T	C	94.96	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||1206|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>G|||||2955|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19302A>G||||||
1	636116	.	G	C	11245.35	.	AC=340;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>G|||||1200|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>G|||||2949|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19296C>G||||||
1	636136	.	A	G	114.98	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>C|||||1180|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>C|||||2929|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19276T>C||||||
1	636285	.	T	C	104.22	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||1031|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>G|||||2780|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19127A>G||||||
1	636298	.	T	C	384.86	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||1018|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>G|||||2767|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19114A>G||||||
1	636317	.	C	A	48.29	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>T|||||999|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>T|||||2748|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19095G>T||||||
1	636318	.	G	A	6663.46	.	AC=260;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>T|||||998|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>T|||||2747|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19094C>T||||||
1	636365	.	T	G	91.0	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>C|||||951|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>C|||||2700|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+19047A>C||||||
1	636470	.	C	T	25.96	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||846|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||2595|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+18942G>A||||||
1	636526	.	T	C	68.54	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629A>G|||||790|,C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480A>G|||||2539|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+18886A>G||||||
1	636673	.	C	T	71.18	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||643|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||2392|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+18739G>A||||||
1	636710	.	C	T	50.91	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>A|||||606|,T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>A|||||2355|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+18702G>A||||||
1	636945	.	C	G	28.14	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629G>C|||||371|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>C|||||2120|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+18467G>C||||||
1	636975	.	G	A	1700.34	.	AC=49;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629C>T|||||341|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480C>T|||||2090|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+18437C>T||||||
1	637038	.	A	G	5.8	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.*629T>C|||||278|,G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480T>C|||||2027|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+18374T>C||||||
1	637753	.	C	A	34.46	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.*480G>T|||||1312|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+17659G>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|2/2|n.225-33G>T||||||
1	643635	.	C	T	251.68	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.*750G>A|||||3087|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+11777G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.120-4466G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|2/2|n.375+3456G>A||||||
1	644420	.	T	C	373.95	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.*750A>G|||||2302|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+10992A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.120-5251A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|2/2|n.375+2671A>G||||||
1	645399	.	T	C	12.93	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.*750A>G|||||1323|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+10013A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.120-6230A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|2/2|n.375+1692A>G||||||
1	645605	.	T	A	693.39	.	AC=41;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.*750A>T|||||1117|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+9807A>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.120-6436A>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|2/2|n.375+1486A>T||||||
1	645944	.	G	A	8.42	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.*750C>T|||||778|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+9468C>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.120-6775C>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|2/2|n.375+1147C>T||||||
1	646583	.	A	G	47.88	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.*750T>C|||||139|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+8829T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.120-7414T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|2/2|n.375+508T>C||||||
1	647398	.	T	C	364.05	.	AC=28;ANN=C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-96A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+8014A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+8014A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-96A>G||||||
1	647443	.	C	T	85.7	.	AC=7;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-141G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+7969G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+7969G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-141G>A||||||
1	649113	.	C	T	2799.55	.	AC=118;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-1811G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+6299G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+6299G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-1811G>A||||||
1	649192	.	A	T	589.27	.	AC=33;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-1890T>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+6220T>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+6220T>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-1890T>A||||||
1	649377	.	C	T	67.38	.	AC=2;ANN=T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-2075G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+6035G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+6035G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-2075G>A||||||
1	649437	.	A	G	150.54	.	AC=8;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-2135T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+5975T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+5975T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-2135T>C||||||
1	650097	.	A	G	402.35	.	AC=32;ANN=G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-2795T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+5315T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+5315T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-2795T>C||||||
1	650469	.	A	G	5.73	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336T>C|||||4969|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-3167T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+4943T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+4943T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-3167T>C||||||
1	650823	.	A	G	7823.08	.	AC=177;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336T>C|||||4615|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-3521T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+4589T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+4589T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-3521T>C||||||
1	651054	.	A	G	2296.48	.	AC=105;ANN=G|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336T>C|||||4384|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-3752T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+4358T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+4358T>C||||||,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-3752T>C||||||
1	651077	.	T	C	2704.63	.	AC=111;ANN=C|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336A>G|||||4361|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-3775A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+4335A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+4335A>G||||||,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-3775A>G||||||
1	651149	.	C	T	7301.88	.	AC=207;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336G>A|||||4289|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-3847G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+4263G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+4263G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-3847G>A||||||
1	651203	.	C	T	81.32	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336G>A|||||4235|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-3901G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+4209G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+4209G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-3901G>A||||||
1	651352	.	C	T	1212.28	.	AC=62;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336G>A|||||4086|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.170-4050G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+4060G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+4060G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.164-4050G>A||||||
1	651615	.	C	T	1378.73	.	AC=72;ANN=T|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336G>A|||||3823|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.169+3797G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+3797G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+3797G>A||||||,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.163+3797G>A||||||
1	653356	.	T	A	19.78	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.-1T>A|||||4116|,A|downstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.*336A>T|||||2082|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA|1/1|n.169+2056A>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA|1/2|n.169+2056A>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA|1/2|n.119+2056A>T||||||,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA|1/2|n.163+2056A>T||||||
1	655641	.	C	T	16.96	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1G>A|||||61|,T|upstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.-1C>T|||||1831|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1G>A|||||61|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1G>A|||||111|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1G>A|||||67|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.194-61G>A||||||
1	655642	.	G	A	330.42	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1C>T|||||62|,A|upstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.-1G>A|||||1830|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1C>T|||||62|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1C>T|||||112|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1C>T|||||68|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.194-62C>T||||||
1	655972	.	A	T	17.3	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1T>A|||||392|,T|upstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.-1A>T|||||1500|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1T>A|||||392|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1T>A|||||442|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1T>A|||||398|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.194-392T>A||||||
1	656074	.	C	T	76.02	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1G>A|||||494|,T|upstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.-1C>T|||||1398|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1G>A|||||494|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1G>A|||||544|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1G>A|||||500|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.194-494G>A||||||
1	657242	.	T	C	49.82	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1A>G|||||1662|,C|upstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.-1T>C|||||230|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1A>G|||||1662|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1A>G|||||1712|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1A>G|||||1668|,C|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236A>G|||||4369|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.194-1662A>G||||||
1	657534	.	G	A	78.79	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1C>T|||||1954|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1C>T|||||1954|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1C>T|||||2004|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1C>T|||||1960|,A|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236C>T|||||4077|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.194-1954C>T||||||,A|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.63G>A||||||
1	657549	.	T	G	32.84	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1A>C|||||1969|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1A>C|||||1969|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1A>C|||||2019|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1A>C|||||1975|,G|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236A>C|||||4062|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.194-1969A>C||||||,G|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.78T>G||||||
1	657788	.	G	C	1091.71	.	AC=72;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1C>G|||||2208|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1C>G|||||2208|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1C>G|||||2258|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1C>G|||||2214|,C|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236C>G|||||3823|,C|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.193+1950C>G||||||,C|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.317G>C||||||
1	657918	.	C	T	46.15	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1G>A|||||2338|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1G>A|||||2338|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1G>A|||||2388|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1G>A|||||2344|,T|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236G>A|||||3693|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.193+1820G>A||||||,T|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.447C>T||||||
1	658026	.	A	G	89.13	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1T>C|||||2446|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1T>C|||||2446|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1T>C|||||2496|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1T>C|||||2452|,G|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236T>C|||||3585|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.193+1712T>C||||||,G|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.555A>G||||||
1	658377	.	G	A	72.72	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1C>T|||||2797|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1C>T|||||2797|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1C>T|||||2847|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1C>T|||||2803|,A|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236C>T|||||3234|,A|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.193+1361C>T||||||,A|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.906G>A||||||
1	658426	.	G	T	85.66	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1C>A|||||2846|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1C>A|||||2846|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1C>A|||||2896|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1C>A|||||2852|,T|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236C>A|||||3185|,T|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.193+1312C>A||||||,T|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.955G>T||||||
1	659174	.	A	G	53.17	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000414688|lincRNA||n.-1T>C|||||3594|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000440200|lincRNA||n.-1T>C|||||3594|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000441245|lincRNA||n.-1T>C|||||3644|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000419394|lincRNA||n.-1T>C|||||3600|,G|downstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.*1236T>C|||||2437|,G|intron_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA|1/1|n.193+564T>C||||||,G|non_coding_exon_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene|1/2|n.1703A>G||||||
1	662201	.	G	A	1578.36	.	AC=92;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||2271|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||1918|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|2/2|n.646C>T||||||
1	662335	.	G	C	107.67	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>G|||||2405|,C|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>C|||||2052|,C|non_coding_exon_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|2/2|n.512C>G||||||
1	662382	.	C	T	47.23	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>A|||||2452|,T|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>T|||||2099|,T|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-10G>A||||||
1	662414	.	C	T	247.15	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>A|||||2484|,T|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>T|||||2131|,T|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-42G>A||||||
1	662571	.	C	T	87.31	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>A|||||2641|,T|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>T|||||2288|,T|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-199G>A||||||
1	662613	.	G	A	199.1	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||2683|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||2330|,A|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-241C>T||||||
1	662622	rs61769339	G	A	1833.38	.	AC=61;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||2692|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||2339|,A|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-250C>T||||||
1	662654	.	G	A	118.49	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||2724|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||2371|,A|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-282C>T||||||
1	662666	.	A	G	40.76	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1T>C|||||2736|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455A>G|||||2383|,G|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-294T>C||||||
1	662679	.	G	A	218.61	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||2749|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||2396|,A|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-307C>T||||||
1	662703	.	G	A	91.69	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||2773|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||2420|,A|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.475-331C>T||||||
1	662857	.	G	A	465.47	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||2927|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||2574|,A|intron_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/1|n.474+197C>T||||||
1	663097	.	G	C	16839.63	.	AC=561;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>G|||||3167|,C|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>C|||||2814|,C|non_coding_exon_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/2|n.431C>G||||||
1	663409	.	A	G	17.44	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1T>C|||||3479|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455A>G|||||3126|,G|non_coding_exon_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/2|n.119T>C||||||
1	663506	.	T	C	85.22	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1A>G|||||3576|,C|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455T>C|||||3223|,C|non_coding_exon_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene|1/2|n.22A>G||||||
1	663815	.	G	A	19.4	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||288|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||3885|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||3532|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	663945	.	C	G	53.46	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>C|||||418|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>C|||||4015|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>G|||||3662|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664010	.	A	C	385.61	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>G|||||483|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1T>G|||||4080|,C|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455A>C|||||3727|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664020	.	A	G	61.77	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>C|||||493|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1T>C|||||4090|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455A>G|||||3737|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664224	.	G	A	14.35	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||697|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||4294|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||3941|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664271	.	C	A	229.37	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>T|||||744|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>T|||||4341|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>A|||||3988|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664363	.	G	A	154.83	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||836|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||4433|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||4080|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664412	.	G	A	7.82	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||885|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||4482|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||4129|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664435	.	C	A	124.66	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>T|||||908|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>T|||||4505|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>A|||||4152|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664468	.	G	T	486.66	.	AC=43;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>A|||||941|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>A|||||4538|,T|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>T|||||4185|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664469	.	G	C	285.87	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>G|||||942|,C|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>G|||||4539|,C|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>C|||||4186|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664526	.	C	T	21.95	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>A|||||999|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>A|||||4596|,T|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>T|||||4243|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664599	.	G	A	39.79	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||1072|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||4669|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||4316|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664702	.	T	G	24.4	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>C|||||1175|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1A>C|||||4772|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455T>G|||||4419|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664705	.	G	A	48.81	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||1178|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||4775|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||4422|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664724	.	C	G	29.21	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>C|||||1197|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1G>C|||||4794|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>G|||||4441|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664740	.	A	G	89.14	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>C|||||1213|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1T>C|||||4810|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455A>G|||||4457|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664828	.	G	A	33.43	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||1301|,A|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>T|||||4898|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||4545|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664834	.	T	G	155.3	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>C|||||1307|,G|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1A>C|||||4904|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455T>G|||||4551|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	664895	.	G	T	83.03	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>A|||||1368|,T|upstream_gene_variant|MODIFIER|RP5-857K21.4|ENSG00000230021|transcript|ENST00000447954|lincRNA||n.-1C>A|||||4965|,T|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>T|||||4612|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665058	.	C	G	137.78	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>C|||||1531|,G|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455C>G|||||4775|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665125	.	G	A	46.04	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||1598|,A|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455G>A|||||4842|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665266	.	T	C	185.11	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>G|||||1739|,C|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455T>C|||||4983|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665268	.	T	C	135.44	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>G|||||1741|,C|downstream_gene_variant|MODIFIER|CICP3|ENSG00000229376|transcript|ENST00000440782|processed_pseudogene||n.*2455T>C|||||4985|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665299	.	G	A	39.81	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||1772|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665301	.	G	C	100.96	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>G|||||1774|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665325	.	A	G	26.21	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>C|||||1798|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665401	.	C	T	964.81	.	AC=41;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>A|||||1874|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665488	.	T	C	297.57	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>G|||||1961|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665506	.	G	C	136.77	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>G|||||1979|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665665	.	A	C	14.3	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>G|||||2138|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665763	.	C	T	585.58	.	AC=38;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>A|||||2236|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665848	.	T	G	153.39	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>C|||||2321|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665857	.	C	T	241.29	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>A|||||2330|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	665962	.	A	G	61.64	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>C|||||2435|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666008	.	G	C	150.57	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>G|||||2481|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666039	.	G	C	65.34	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>G|||||2512|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666249	.	C	T	1626.07	.	AC=65;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>A|||||2722|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666402	.	T	C	58.44	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>G|||||2875|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666449	.	C	T	277.1	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>A|||||2922|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666512	.	G	A	56.44	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||2985|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666771	.	G	A	229.3	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||3244|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	666775	.	A	C	39.94	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>G|||||3248|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	667260	.	A	G	8.36	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>C|||||3733|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	667296	.	T	C	608.38	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>G|||||3769|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	667326	.	G	C	96.53	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>G|||||3799|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	667493	.	T	C	126.2	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>G|||||3966|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	667546	.	A	C	18.58	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>G|||||4019|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	667622	.	A	G	22.97	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>C|||||4095|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	667666	rs116279247	T	A	728.73	.	AC=51;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1A>T|||||4139|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668073	.	A	G	812.82	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1T>C|||||4546|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668083	.	C	T	34.08	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1G>A|||||4556|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668329	.	G	A	44.17	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||4802|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668340	.	G	C	80.37	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>G|||||4813|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668346	rs115048193	G	A	360.38	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||4819|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668374	.	G	A	5919.32	.	AC=115;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.1|ENSG00000224956|transcript|ENST00000506640|unprocessed_pseudogene||n.-1C>T|||||4847|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668564	rs61769342	G	C	14.25	.	AC=5;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668605	.	G	A	102.74	.	AC=3;ANN=A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668843	.	C	T	63.37	.	AC=9;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668921	.	G	A	146.87	.	AC=10;ANN=A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	668922	.	C	G	376.71	.	AC=9;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669225	.	C	T	121.36	.	AC=11;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669228	.	G	A	45.11	.	AC=1;ANN=A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669265	.	G	T	75.48	.	AC=7;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669533	rs61769343	G	C	824.14	.	AC=50;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669540	rs61769344	C	T	735.05	.	AC=43;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669590	rs78732431	G	T	2112.28	.	AC=95;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669597	.	A	G	43.1	.	AC=3;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669618	.	C	G	32.66	.	AC=7;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669731	.	A	C	60.81	.	AC=8;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669746	.	C	T	569.98	.	AC=28;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669767	.	T	C	64.83	.	AC=8;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669816	.	T	G	68.49	.	AC=7;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669821	.	T	C	60.62	.	AC=1;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	669948	.	C	A	48.05	.	AC=7;ANN=A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670179	.	G	A	309.81	.	AC=22;ANN=A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670183	.	A	C	12.69	.	AC=4;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670557	.	A	G	29.42	.	AC=5;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670668	.	A	G	83.47	.	AC=14;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670675	.	T	C	239.83	.	AC=25;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670694	.	G	C	22.2	.	AC=4;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670710	.	A	G	1748.42	.	AC=81;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670712	.	A	C	1741.89	.	AC=74;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670794	.	C	T	38.7	.	AC=5;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670807	.	C	T	155.8	.	AC=11;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670822	.	G	A	27.25	.	AC=7;ANN=A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	670916	.	C	T	47.19	.	AC=4;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671364	.	T	C	11.06	.	AC=3;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671570	.	T	C	22.01	.	AC=4;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671598	.	C	T	674.07	.	AC=49;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671669	.	A	G	120.99	.	AC=12;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671734	.	T	C	6.85	.	AC=1;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671740	.	C	T	737.17	.	AC=59;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671782	.	C	A	344.04	.	AC=25;ANN=A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671810	.	T	C	185.57	.	AC=19;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671873	.	G	C	107.57	.	AC=20;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	671916	.	T	C	63.95	.	AC=3;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672048	.	C	G	7.15	.	AC=1;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672109	.	T	G	166.1	.	AC=14;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672132	.	T	C	70.34	.	AC=11;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672139	.	G	C	54.29	.	AC=6;ANN=C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672144	.	T	G	93.63	.	AC=11;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672156	.	C	T	195.24	.	AC=6;ANN=T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672172	.	A	G	129.46	.	AC=13;ANN=G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672209	rs79279787	G	A	26422.59	.	AC=386;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||4984|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672232	.	C	T	1377.38	.	AC=42;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||4961|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672263	.	A	C	495.88	.	AC=23;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>G|||||4930|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672594	.	T	C	812.09	.	AC=37;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>G|||||4599|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672663	.	T	G	459.45	.	AC=45;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>C|||||4530|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672798	.	G	A	222.31	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||4395|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672823	rs4951925	C	G	509.46	.	AC=38;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>C|||||4370|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672841	.	G	A	620.91	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||4352|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672854	.	G	C	109.73	.	AC=15;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>G|||||4339|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672885	.	A	C	54.01	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>G|||||4308|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672910	.	G	A	34.96	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||4283|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672940	.	G	C	1105.16	.	AC=39;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>G|||||4253|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	672961	.	C	T	81.51	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||4232|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673031	.	G	A	249.08	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||4162|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673117	.	T	C	5229.39	.	AC=99;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>G|||||4076|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673131	.	C	A	10.11	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>T|||||4062|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673143	.	C	T	460.39	.	AC=17;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||4050|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673174	.	T	C	106.14	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>G|||||4019|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673223	.	T	G	2122.63	.	AC=111;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>C|||||3970|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673231	.	T	A	27.22	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>T|||||3962|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673236	rs9768594	G	T	1992.42	.	AC=109;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>A|||||3957|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673327	rs71221966	G	A	6030.0	.	AC=161;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||3866|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673392	.	A	C	250.47	.	AC=23;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>G|||||3801|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	673723	.	G	A	164.22	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||3470|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674109	.	A	G	76.04	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>C|||||3084|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674211	.	C	T	761.4	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||2982|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674247	.	C	T	144.13	.	AC=17;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||2946|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674265	.	G	A	7.47	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||2928|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674306	.	G	C	83.55	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>G|||||2887|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674325	.	C	T	244.93	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||2868|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674326	.	G	T	24.28	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>A|||||2867|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674421	.	A	T	2101.94	.	AC=120;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>A|||||2772|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674434	.	A	T	8063.19	.	AC=184;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>A|||||2759|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674437	.	A	G	349.34	.	AC=33;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>C|||||2756|,G|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674452	.	T	C	115.98	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>G|||||2741|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674456	.	G	A	10362.1	.	AC=215;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||2737|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674498	.	A	T	136.54	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860T>A|||||2695|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	674745	.	G	A	50.39	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||2448|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675110	.	G	A	30.43	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||2083|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675136	.	G	T	654.82	.	AC=34;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>A|||||2057|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675146	.	G	A	804.87	.	AC=58;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||2047|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675160	.	C	T	114.72	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||2033|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675548	.	T	C	413.25	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>G|||||1645|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675665	.	C	T	24.28	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||1528|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675666	.	G	A	404.63	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860C>T|||||1527|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	675719	.	T	C	465.55	.	AC=29;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860A>G|||||1474|,C|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	676118	.	C	T	2509.57	.	AC=66;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||1075|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	676127	.	C	T	852.56	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||1066|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	676751	.	C	A	22.55	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>T|||||442|,A|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	677118	.	C	T	38.44	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.*4860G>A|||||75|,T|intergenic_region|MODIFIER|RP11-206L10.1-RP11-206L10.3|ENSG00000224956-ENSG00000235373|intergenic_region|ENSG00000224956-ENSG00000235373|||||||||
1	677836	.	T	A	7.8	.	AC=1;ANN=A|non_coding_exon_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|2/2|n.4217A>T||||||
1	678914	.	C	T	7.1	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-184G>A||||||
1	679094	.	G	A	9.49	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-364C>T||||||
1	679159	.	A	G	36.92	.	AC=5;ANN=G|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-429T>C||||||
1	679520	.	G	A	74.8	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-790C>T||||||
1	679604	.	C	A	3233.06	.	AC=173;ANN=A|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-874G>T||||||
1	679774	.	G	A	21.71	.	AC=4;ANN=A|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1044C>T||||||
1	679931	.	C	T	1629.58	.	AC=81;ANN=T|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1201G>A||||||
1	679984	.	A	C	491.06	.	AC=26;ANN=C|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1254T>G||||||
1	680053	.	T	C	666.03	.	AC=31;ANN=C|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1323A>G||||||
1	680061	.	C	T	13.95	.	AC=4;ANN=T|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1331G>A||||||
1	680144	.	A	C	1203.77	.	AC=56;ANN=C|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1414T>G||||||
1	680246	.	G	A	17473.29	.	AC=391;ANN=A|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1516C>T||||||
1	680264	.	G	A	356.87	.	AC=31;ANN=A|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1534C>T||||||
1	680375	.	A	G	366.13	.	AC=19;ANN=G|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3323-1645T>C||||||
1	680903	.	C	T	77.18	.	AC=6;ANN=T|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3322+1172G>A||||||
1	681467	.	A	C	105.01	.	AC=8;ANN=C|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3322+608T>G||||||
1	681698	.	T	C	31.01	.	AC=4;ANN=C|intron_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/1|n.3322+377A>G||||||
1	684760	.	C	T	5.0	.	AC=2;ANN=T|non_coding_exon_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/2|n.637G>A||||||
1	684862	.	G	A	345.63	.	AC=38;ANN=A|non_coding_exon_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA|1/2|n.535C>T||||||
1	685644	.	G	A	24.79	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||248|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	685776	.	G	A	12.9	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||380|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	686632	.	G	A	81.49	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||1236|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	686690	.	T	C	19.87	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1A>G|||||1294|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	686767	.	A	T	18.31	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1T>A|||||1371|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	686976	.	C	T	27.21	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>A|||||1580|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	688038	.	T	C	52.13	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1A>G|||||2642|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	688060	.	A	T	20.45	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1T>A|||||2664|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	688319	.	C	T	28.07	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>A|||||2923|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	688468	.	C	T	1313.82	.	AC=87;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>A|||||3072|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	688798	.	C	T	67.03	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>A|||||3402|,T|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104G>A|||||4815|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689010	.	G	A	4.8	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||3614|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||4603|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689327	.	T	C	36.91	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1A>G|||||3931|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||4286|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689409	.	A	T	24.09	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1T>A|||||4013|,T|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104T>A|||||4204|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689416	.	G	A	444.97	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||4020|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||4197|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||4996|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689427	.	T	C	57.13	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1A>G|||||4031|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||4186|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||4985|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689434	.	T	C	62.97	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1A>G|||||4038|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||4179|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||4978|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689572	.	G	A	90.98	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||4176|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||4041|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||4840|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689642	.	C	T	103.8	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>A|||||4246|,T|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104G>A|||||3971|,T|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295G>A|||||4770|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689670	.	C	T	95.17	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>A|||||4274|,T|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104G>A|||||3943|,T|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295G>A|||||4742|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689685	.	T	C	57.07	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1A>G|||||4289|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||3928|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||4727|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	689965	.	G	C	12.79	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>G|||||4569|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>G|||||3648|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>G|||||4447|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	690060	.	C	G	12.57	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>C|||||4664|,G|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104G>C|||||3553|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295G>C|||||4352|,G|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	690329	.	C	T	777.5	.	AC=65;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1G>A|||||4933|,T|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104G>A|||||3284|,T|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295G>A|||||4083|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	690346	.	G	A	133.78	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||4950|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||3267|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||4066|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	690362	.	G	A	125.01	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.3|ENSG00000235373|transcript|ENST00000416385|lincRNA||n.-1C>T|||||4966|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||3251|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||4050|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	690741	.	A	G	10.29	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104T>C|||||2872|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295T>C|||||3671|,G|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	690872	.	T	C	34.06	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||2741|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||3540|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	690934	.	G	A	18.55	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||2679|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||3478|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	691036	.	T	C	50.82	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||2577|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||3376|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	691115	.	G	A	46.66	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||2498|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||3297|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	691544	.	T	A	15007.34	.	AC=398;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>A|||||4747|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>T|||||2069|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>T|||||2868|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	691726	.	A	G	151.19	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>G|||||4565|,G|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104T>C|||||1887|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295T>C|||||2686|,G|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	691919	.	G	C	201.13	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>C|||||4372|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>G|||||1694|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>G|||||2493|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	691961	.	T	G	139.12	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>G|||||4330|,G|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>C|||||1652|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>C|||||2451|,G|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	691967	.	A	T	88.44	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>T|||||4324|,T|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104T>A|||||1646|,T|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295T>A|||||2445|,T|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	692064	.	C	G	323.79	.	AC=27;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1C>G|||||4227|,G|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104G>C|||||1549|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295G>C|||||2348|,G|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	692090	.	G	A	193.26	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>A|||||4201|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||1523|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||2322|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	692201	.	T	C	11.61	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>C|||||4090|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||1412|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||2211|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	693183	.	G	C	42.86	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>C|||||3108|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>G|||||430|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>G|||||1229|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	693206	.	G	A	5.93	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>A|||||3085|,A|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104C>T|||||407|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>T|||||1206|,A|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	693562	.	T	C	70.9	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>C|||||2729|,C|downstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.*104A>G|||||51|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||850|,C|intergenic_region|MODIFIER|RP11-206L10.3-RNU6-1199P|ENSG00000235373-ENSG00000223181|intergenic_region|ENSG00000235373-ENSG00000223181|||||||||
1	693625	.	T	C	776.85	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>C|||||2666|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||787|,C|non_coding_exon_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA|1/1|n.92A>G||||||
1	693689	.	A	T	87.59	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>T|||||2602|,T|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295T>A|||||723|,T|non_coding_exon_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA|1/1|n.28T>A||||||
1	693731	rs61769350	A	G	5954.01	.	AC=99;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1T>C|||||15|,G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>G|||||2560|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295T>C|||||681|,G|intergenic_region|MODIFIER|RNU6-1199P-RP11-206L10.5|ENSG00000223181-ENSG00000240618|intergenic_region|ENSG00000223181-ENSG00000240618|||||||||
1	693823	.	G	C	905.14	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>G|||||107|,C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>C|||||2468|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295C>G|||||589|,C|intergenic_region|MODIFIER|RNU6-1199P-RP11-206L10.5|ENSG00000223181-ENSG00000240618|intergenic_region|ENSG00000223181-ENSG00000240618|||||||||
1	693890	.	T	A	12.44	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1A>T|||||174|,A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>A|||||2401|,A|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>T|||||522|,A|intergenic_region|MODIFIER|RNU6-1199P-RP11-206L10.5|ENSG00000223181-ENSG00000240618|intergenic_region|ENSG00000223181-ENSG00000240618|||||||||
1	694191	.	C	G	67.4	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1G>C|||||475|,G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1C>G|||||2100|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295G>C|||||221|,G|intergenic_region|MODIFIER|RNU6-1199P-RP11-206L10.5|ENSG00000223181-ENSG00000240618|intergenic_region|ENSG00000223181-ENSG00000240618|||||||||
1	694345	.	A	G	9.81	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1T>C|||||629|,G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>G|||||1946|,G|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295T>C|||||67|,G|intergenic_region|MODIFIER|RNU6-1199P-RP11-206L10.5|ENSG00000223181-ENSG00000240618|intergenic_region|ENSG00000223181-ENSG00000240618|||||||||
1	694390	.	T	C	116.15	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1A>G|||||674|,C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>C|||||1901|,C|downstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.*295A>G|||||22|,C|intergenic_region|MODIFIER|RNU6-1199P-RP11-206L10.5|ENSG00000223181-ENSG00000240618|intergenic_region|ENSG00000223181-ENSG00000240618|||||||||
1	694514	.	G	C	377.8	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>G|||||798|,C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>C|||||1777|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-11C>G||||||
1	694524	.	C	G	327.07	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1G>C|||||808|,G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1C>G|||||1767|,G|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-21G>C||||||
1	694805	.	C	A	142.14	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1G>T|||||1089|,A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1C>A|||||1486|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-302G>T||||||
1	694836	.	A	C	124.05	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1T>G|||||1120|,C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>C|||||1455|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-333T>G||||||
1	694877	.	A	C	1456.33	.	AC=94;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1T>G|||||1161|,C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>C|||||1414|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-374T>G||||||
1	694879	.	C	A	295.7	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1G>T|||||1163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1C>A|||||1412|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-376G>T||||||
1	694888	.	C	G	249.75	.	AC=27;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1G>C|||||1172|,G|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1C>G|||||1403|,G|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-385G>C||||||
1	695007	.	T	C	67.14	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1A>G|||||1291|,C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>C|||||1284|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-504A>G||||||
1	695088	.	C	T	19.9	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1G>A|||||1372|,T|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1C>T|||||1203|,T|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-585G>A||||||
1	695115	.	A	T	605.15	.	AC=41;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1T>A|||||1399|,T|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>T|||||1176|,T|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-612T>A||||||
1	695209	.	G	A	11.08	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>T|||||1493|,A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>A|||||1082|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-706C>T||||||
1	695413	.	G	A	219.26	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>T|||||1697|,A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>A|||||878|,A|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317C>T|||||4824|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-910C>T||||||
1	695516	.	T	C	21.27	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1A>G|||||1800|,C|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1T>C|||||775|,C|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317A>G|||||4721|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-1013A>G||||||
1	695785	.	A	T	78.72	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1T>A|||||2069|,T|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1A>T|||||506|,T|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317T>A|||||4452|,T|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-1282T>A||||||
1	696122	.	G	A	50.23	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>T|||||2406|,A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>A|||||169|,A|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317C>T|||||4115|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-1619C>T||||||
1	696283	.	G	A	78.3	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>T|||||2567|,A|upstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.-1G>A|||||8|,A|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317C>T|||||3954|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-1780C>T||||||
1	696655	.	A	G	2008.26	.	AC=63;ANN=G|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1T>C|||||2939|,G|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317T>C|||||3582|,G|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-2152T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense|1/1|n.244+121A>G||||||
1	697270	.	G	T	32.45	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>A|||||3554|,T|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317C>A|||||2967|,T|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.204-2767C>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense|2/2|n.357G>T||||||
1	697497	.	T	C	9.14	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1A>G|||||3781|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>C|||||128|,C|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317A>G|||||2740|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+2606A>G||||||
1	697887	.	G	C	425.94	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1C>G|||||4171|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>C|||||518|,C|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317C>G|||||2350|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+2216C>G||||||
1	697956	.	T	C	81.86	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1A>G|||||4240|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>C|||||587|,C|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317A>G|||||2281|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+2147A>G||||||
1	698477	.	C	T	353.09	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1G>A|||||4761|,T|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456C>T|||||1108|,T|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317G>A|||||1760|,T|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+1626G>A||||||
1	698547	.	T	C	30.94	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RNU6-1199P|ENSG00000223181|transcript|ENST00000411249|snRNA||n.-1A>G|||||4831|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>C|||||1178|,C|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317A>G|||||1690|,C|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+1556A>G||||||
1	699361	.	C	A	28.28	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456C>A|||||1992|,A|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317G>T|||||876|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+742G>T||||||
1	699581	.	T	A	22.51	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>A|||||2212|,A|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317A>T|||||656|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+522A>T||||||
1	699868	.	G	A	30.66	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>A|||||2499|,A|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317C>T|||||369|,A|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+235C>T||||||
1	700028	.	A	G	387.76	.	AC=16;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456A>G|||||2659|,G|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317T>C|||||209|,G|intron_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/1|n.203+75T>C||||||
1	700217	.	G	A	16.09	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>A|||||2848|,A|downstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.*1317C>T|||||20|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA|1/2|n.89C>T||||||
1	700371	.	G	A	436.16	.	AC=43;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>T|||||66|,A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>A|||||3002|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|7/7|n.1183C>T||||||
1	700532	.	T	A	612.87	.	AC=51;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>T|||||227|,A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>A|||||3163|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|7/7|n.1022A>T||||||
1	700601	.	C	T	102.59	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1G>A|||||296|,T|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456C>T|||||3232|,T|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|7/7|n.953G>A||||||
1	700625	.	G	A	327.72	.	AC=26;ANN=A|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|7/7|n.929C>T||||||,A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>T|||||320|,A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>A|||||3256|
1	700828	.	T	A	1180.62	.	AC=60;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>T|||||523|,A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>A|||||3459|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/6|n.927-201A>T||||||
1	700941	.	G	A	245.5	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>T|||||636|,A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>A|||||3572|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/6|n.927-314C>T||||||
1	701131	.	A	C	352.63	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1T>G|||||826|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456A>C|||||3762|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/6|n.927-504T>G||||||
1	701193	.	C	T	6059.8	.	AC=152;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1G>A|||||888|,T|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456C>T|||||3824|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/6|n.926+516G>A||||||
1	701403	.	G	C	35.97	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>G|||||1098|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>C|||||4034|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/6|n.926+306C>G||||||
1	701503	.	T	C	35.64	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>G|||||1198|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>C|||||4134|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/6|n.926+206A>G||||||
1	701625	.	T	C	32.08	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>G|||||1320|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>C|||||4256|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/6|n.926+84A>G||||||
1	701747	.	G	A	443.86	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>T|||||1442|,A|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456G>A|||||4378|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|6/7|n.888C>T||||||
1	701835	.	T	C	635.2	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>G|||||1530|,C|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456T>C|||||4466|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.868-68A>G||||||
1	701946	.	A	G	9655.62	.	AC=302;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1T>C|||||1641|,G|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456A>G|||||4577|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.868-179T>C||||||
1	702083	.	C	G	67.28	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1G>C|||||1778|,G|downstream_gene_variant|MODIFIER|RP11-206L10.4|ENSG00000229905|transcript|ENST00000422528|antisense||n.*456C>G|||||4714|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.868-316G>C||||||
1	702650	.	T	C	496.26	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>G|||||2345|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.868-883A>G||||||
1	702922	.	C	T	2032.94	.	AC=107;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1G>A|||||2617|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.867+1006G>A||||||
1	702958	.	T	C	1431.65	.	AC=50;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>G|||||2653|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.867+970A>G||||||
1	702971	.	C	T	8594.69	.	AC=183;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1G>A|||||2666|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.867+957G>A||||||
1	703015	.	G	C	1103.59	.	AC=75;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>G|||||2710|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.867+913C>G||||||
1	703464	.	G	A	5.73	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>T|||||3159|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/6|n.867+464C>T||||||
1	703942	.	G	C	453.24	.	AC=21;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>G|||||3637|,C|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|5/7|n.853C>G||||||
1	704367	rs71507456	T	C	5312.74	.	AC=259;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1A>G|||||4062|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|4/6|n.802-374A>G||||||
1	704637	.	G	A	2630.99	.	AC=71;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>T|||||4332|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|4/6|n.801+240C>T||||||
1	704663	.	G	A	185.54	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.5|ENSG00000240618|transcript|ENST00000417659|lincRNA||n.-1C>T|||||4358|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|4/6|n.801+214C>T||||||
1	705452	.	T	A	1438.3	.	AC=52;ANN=A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-360A>T||||||
1	705747	.	G	A	13.94	.	AC=5;ANN=A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-655C>T||||||
1	705853	.	T	C	11.88	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-761A>G||||||
1	705881	rs116763968	C	T	958.27	.	AC=27;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-789G>A||||||
1	705882	rs72631875	G	A	5474.48	.	AC=72;ANN=A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-790C>T||||||
1	705896	.	T	C	18.81	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-804A>G||||||
1	705931	.	T	C	16.94	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-839A>G||||||
1	705974	.	C	T	34.88	.	AC=8;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-882G>A||||||
1	706108	.	A	T	145.92	.	AC=7;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-1016T>A||||||
1	706233	.	G	A	28.08	.	AC=2;ANN=A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-1141C>T||||||
1	706332	rs116771340	G	C	105.63	.	AC=3;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-1240C>G||||||
1	706354	.	T	G	109.86	.	AC=5;ANN=G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-1262A>C||||||
1	706368	rs55727773	A	G	13971.34	.	AC=319;ANN=G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-1276T>C||||||
1	706425	.	C	T	336.94	.	AC=13;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-1333G>A||||||
1	706645	.	A	C	2560.68	.	AC=92;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.586-1553T>G||||||
1	706778	.	G	A	7316.63	.	AC=232;ANN=A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+1578C>T||||||
1	706992	.	C	T	498.74	.	AC=16;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+1364G>A||||||
1	707014	.	A	C	781.3	.	AC=17;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+1342T>G||||||
1	707097	.	C	T	115.82	.	AC=4;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+1259G>A||||||
1	707522	.	G	C	174.86	.	AC=19;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+834C>G||||||
1	707748	.	T	G	23.17	.	AC=7;ANN=G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+608A>C||||||
1	707861	.	T	G	39.34	.	AC=1;ANN=G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+495A>C||||||
1	707886	rs115229562	G	C	2209.89	.	AC=67;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+470C>G||||||
1	707967	.	C	T	54.12	.	AC=2;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+389G>A||||||
1	708058	.	G	A	109.52	.	AC=5;ANN=A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+298C>T||||||
1	708075	.	A	G	395.03	.	AC=38;ANN=G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+281T>C||||||
1	708091	.	A	G	165.72	.	AC=16;ANN=G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/6|n.585+265T>C||||||
1	708432	.	G	A	54.27	.	AC=4;ANN=A|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/7|n.509C>T||||||
1	708461	.	G	T	424.17	.	AC=31;ANN=T|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|3/7|n.480C>A||||||
1	708673	.	C	T	15.84	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|2/6|n.454-186G>A||||||
1	708824	.	T	C	146.92	.	AC=22;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|2/6|n.454-337A>G||||||
1	708934	.	G	A	118.76	.	AC=18;ANN=A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|2/6|n.454-447C>T||||||
1	709135	.	T	C	170.02	.	AC=9;ANN=C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|2/6|n.453+416A>G||||||
1	709242	.	T	C	42.11	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||4908|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||4920|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|2/6|n.453+309A>G||||||
1	709575	.	G	A	46.46	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||4575|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||4587|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||4735|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||4742|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||4861|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|2/7|n.429C>T||||||
1	710088	.	C	A	1480.07	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>A|||||4062|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>A|||||4074|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>A|||||4222|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>A|||||4229|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>A|||||4348|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-428G>T||||||
1	710195	.	A	G	762.99	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||3955|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||3967|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||4115|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||4122|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||4241|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-535T>C||||||
1	710332	.	T	G	127.62	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>G|||||3818|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>G|||||3830|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>G|||||3978|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>G|||||3985|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>G|||||4104|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-672A>C||||||
1	710418	.	G	A	495.46	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||3732|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||3744|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||3892|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||3899|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||4018|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-758C>T||||||
1	710445	.	A	G	127.49	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||3705|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||3717|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||3865|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||3872|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||3991|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-785T>C||||||
1	710575	.	C	T	173.02	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>T|||||3575|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>T|||||3587|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>T|||||3735|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>T|||||3742|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>T|||||3861|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-915G>A||||||
1	710863	.	A	G	29.53	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||3287|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||3299|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||3447|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||3454|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||3573|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1203T>C||||||
1	710871	.	C	G	237.94	.	AC=37;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>G|||||3279|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>G|||||3291|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>G|||||3439|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>G|||||3446|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>G|||||3565|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1211G>C||||||
1	710880	.	T	C	183.5	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||3270|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||3282|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>C|||||3430|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>C|||||3437|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>C|||||3556|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1220A>G||||||
1	710925	.	A	C	397.19	.	AC=49;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>C|||||3225|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>C|||||3237|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>C|||||3385|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>C|||||3392|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>C|||||3511|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1265T>G||||||
1	710959	.	C	T	144.64	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>T|||||3191|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>T|||||3203|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>T|||||3351|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>T|||||3358|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>T|||||3477|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1299G>A||||||
1	710998	.	G	C	49.92	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>C|||||3152|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>C|||||3164|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>C|||||3312|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>C|||||3319|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>C|||||3438|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1338C>G||||||
1	711047	.	T	C	47.96	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||3103|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||3115|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>C|||||3263|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>C|||||3270|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>C|||||3389|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1387A>G||||||
1	711050	.	T	C	74.85	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||3100|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||3112|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>C|||||3260|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>C|||||3267|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>C|||||3386|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1390A>G||||||
1	711096	.	G	A	163.9	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||3054|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||3066|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||3214|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||3221|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||3340|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1436C>T||||||
1	711201	.	G	T	13.7	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>T|||||2949|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>T|||||2961|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>T|||||3109|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>T|||||3116|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>T|||||3235|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1541C>A||||||
1	711276	.	T	C	65.5	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||2874|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||2886|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>C|||||3034|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>C|||||3041|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>C|||||3160|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1616A>G||||||
1	711281	.	C	G	245.43	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>G|||||2869|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>G|||||2881|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>G|||||3029|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>G|||||3036|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>G|||||3155|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1621G>C||||||
1	711310	.	G	A	347.05	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||2840|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||2852|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||3000|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||3007|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||3126|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1650C>T||||||
1	711342	.	A	G	155.82	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||2808|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||2820|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||2968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||2975|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||3094|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1682T>C||||||
1	711538	.	C	T	61.01	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>T|||||2612|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>T|||||2624|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>T|||||2772|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>T|||||2779|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>T|||||2898|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1878G>A||||||
1	711615	.	C	G	39.6	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>G|||||2535|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>G|||||2547|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>G|||||2695|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>G|||||2702|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>G|||||2821|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1955G>C||||||
1	711654	.	G	A	53.72	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||2496|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||2508|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||2656|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||2663|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||2782|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.344-1994C>T||||||
1	711740	.	A	G	20.4	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||2410|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||2422|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||2570|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||2577|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||2696|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+1924T>C||||||
1	712228	.	G	A	140.1	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||1922|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||1934|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||2082|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||2089|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||2208|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+1436C>T||||||
1	712547	.	G	C	80.96	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>C|||||1603|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>C|||||1615|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>C|||||1763|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>C|||||1770|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>C|||||1889|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+1117C>G||||||
1	712583	.	T	C	50.8	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||1567|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||1579|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>C|||||1727|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>C|||||1734|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>C|||||1853|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+1081A>G||||||
1	712684	.	A	G	21.67	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||1466|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||1478|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||1626|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||1633|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||1752|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+980T>C||||||
1	712762	rs12071806	T	G	9120.63	.	AC=131;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>G|||||1388|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>G|||||1400|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>G|||||1548|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>G|||||1555|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>G|||||1674|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+902A>C||||||
1	712871	rs4311830	T	C	821.01	.	AC=35;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||1279|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||1291|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>C|||||1439|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>C|||||1446|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>C|||||1565|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+793A>G||||||
1	712930	rs28457007	T	C	491.79	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>C|||||1220|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>C|||||1232|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>C|||||1380|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>C|||||1387|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>C|||||1506|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+734A>G||||||
1	712991	.	G	C	16.25	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>C|||||1159|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>C|||||1171|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>C|||||1319|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>C|||||1326|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>C|||||1445|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+673C>G||||||
1	713090	.	G	A	4.96	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||1060|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||1072|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||1220|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||1227|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||1346|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+574C>T||||||
1	713092	rs4565649	G	A	1812.37	.	AC=46;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||1058|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||1070|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||1218|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||1225|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||1344|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+572C>T||||||
1	713111	.	C	T	105.21	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>T|||||1039|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>T|||||1051|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>T|||||1199|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>T|||||1206|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>T|||||1325|,T|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+553G>A||||||
1	713158	.	T	A	286.27	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1T>A|||||992|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1T>A|||||1004|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1T>A|||||1152|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1T>A|||||1159|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1T>A|||||1278|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+506A>T||||||
1	713189	.	G	A	76.37	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||961|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||973|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||1121|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||1128|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||1247|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+475C>T||||||
1	713190	.	G	A	72.11	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||960|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||972|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||1120|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||1127|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||1246|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+474C>T||||||
1	713250	.	G	C	431.35	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>C|||||900|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>C|||||912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>C|||||1060|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>C|||||1067|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>C|||||1186|,C|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+414C>G||||||
1	713337	.	G	A	58.74	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||813|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||973|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||980|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||1099|,A|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+327C>T||||||
1	713563	rs4301583	C	G	161.39	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>G|||||587|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>G|||||599|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>G|||||747|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>G|||||754|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>G|||||873|,G|intron_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/6|n.343+101G>C||||||
1	713698	.	C	T	177.66	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>T|||||452|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>T|||||464|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>T|||||612|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>T|||||619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>T|||||738|,T|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/7|n.309G>A||||||
1	713749	.	G	C	44.53	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>C|||||401|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>C|||||413|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>C|||||561|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>C|||||568|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>C|||||687|,C|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/7|n.258C>G||||||
1	713914	rs114212987	A	G	313.66	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||236|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||248|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||396|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||403|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||522|,G|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/7|n.93T>C||||||
1	713977	rs74512038	C	T	5716.11	.	AC=123;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>T|||||173|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>T|||||185|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>T|||||333|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>T|||||340|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>T|||||459|,T|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/7|n.30G>A||||||
1	713979	rs117217250	C	G	157.97	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>G|||||171|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>G|||||183|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>G|||||331|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>G|||||338|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>G|||||457|,G|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/7|n.28G>C||||||
1	714002	.	C	G	175.81	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1C>G|||||148|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1C>G|||||160|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>G|||||308|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>G|||||315|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>G|||||434|,G|non_coding_exon_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA|1/7|n.5G>C||||||
1	714019	rs114983708	A	G	5682.82	.	AC=129;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||13|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||131|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||143|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||291|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||298|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||417|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:714006_714155|||||||||,G|intergenic_region|MODIFIER|RP11-206L10.2-RP11-206L10.9|ENSG00000228327-ENSG00000237491|intergenic_region|ENSG00000228327-ENSG00000237491|||||||||
1	714031	.	G	A	290.96	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||25|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||119|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||131|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||279|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||286|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||405|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:714006_714155|||||||||,A|intergenic_region|MODIFIER|RP11-206L10.2-RP11-206L10.9|ENSG00000228327-ENSG00000237491|intergenic_region|ENSG00000228327-ENSG00000237491|||||||||
1	714077	.	G	A	5.42	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||71|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1G>A|||||73|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1G>A|||||85|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1G>A|||||233|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1G>A|||||240|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||359|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:714006_714155|||||||||,A|intergenic_region|MODIFIER|RP11-206L10.2-RP11-206L10.9|ENSG00000228327-ENSG00000237491|intergenic_region|ENSG00000228327-ENSG00000237491|||||||||
1	714086	.	A	G	43.39	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||80|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.-1A>G|||||64|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.-1A>G|||||76|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||224|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||231|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||350|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:714006_714155|||||||||,G|intergenic_region|MODIFIER|RP11-206L10.2-RP11-206L10.9|ENSG00000228327-ENSG00000237491|intergenic_region|ENSG00000228327-ENSG00000237491|||||||||
1	714189	.	A	G	70.01	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||183|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1A>G|||||121|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1A>G|||||128|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1A>G|||||247|,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/3|n.40A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/2|n.28A>G||||||
1	714277	.	C	A	42.95	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>T|||||271|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.-1C>A|||||33|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>A|||||40|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>A|||||159|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/3|n.128C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/2|n.116C>A||||||
1	714310	.	C	G	168.39	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>C|||||304|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.-1C>G|||||7|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1C>G|||||126|,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/3|n.161C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/2|n.149C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/4|n.1C>G||||||
1	714427	rs12028261	G	A	14035.43	.	AC=463;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||421|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.-1G>A|||||9|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/3|n.278G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/2|n.266G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/4|n.118G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/4|n.111G>A||||||
1	714439	.	G	A	502.76	.	AC=43;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||433|,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/3|n.290G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/2|n.278G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/4|n.130G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/4|n.123G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/3|n.4G>A||||||
1	714596	.	T	C	252.96	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||590|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+124T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+124T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+124T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+124T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+124T>C||||||
1	714622	rs117741916	G	C	98.94	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>G|||||616|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+150G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+150G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+150G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+150G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+150G>C||||||
1	714760	.	G	C	53.21	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>G|||||754|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>C|||||4990|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>C|||||4990|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+288G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+288G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+288G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+288G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+288G>C||||||
1	714832	.	T	C	38.28	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||826|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||4918|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||4944|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+360T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+360T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+360T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+360T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+360T>C||||||
1	715027	.	T	C	7.45	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||1021|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||4749|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+555T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+555T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+555T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+555T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+555T>C||||||
1	715036	.	G	C	24.19	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>G|||||1030|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>C|||||4740|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+564G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+564G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+564G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+564G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+564G>C||||||
1	715074	rs11804379	A	G	1387.95	.	AC=37;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||1068|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||4676|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||4702|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+602A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+602A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+602A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+602A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+602A>G||||||
1	715106	.	A	C	59.37	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>G|||||1100|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>C|||||4644|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>C|||||4670|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+634A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+634A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+634A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+634A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+634A>C||||||
1	715107	rs12184275	A	G	39.39	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||1101|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||4643|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||4669|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+635A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+635A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+635A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+635A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+635A>G||||||
1	715140	.	G	C	291.09	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>G|||||1134|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>C|||||4610|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>C|||||4636|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+668G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+668G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+668G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+668G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+668G>C||||||
1	715142	.	G	T	300.99	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>A|||||1136|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>T|||||4634|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+670G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+670G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+670G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+670G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+670G>T||||||
1	715205	.	C	G	2833.28	.	AC=56;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>C|||||1199|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>G|||||4545|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>G|||||4571|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+733C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+733C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+733C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+733C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+733C>G||||||
1	715211	.	C	G	46.51	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>C|||||1205|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>G|||||4539|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>G|||||4565|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+739C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+739C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+739C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+739C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+739C>G||||||
1	715265	rs12184267	C	T	793.01	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>A|||||1259|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>T|||||4485|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>T|||||4511|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+793C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+793C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+793C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+793C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+793C>T||||||
1	715271	rs78390460	G	C	408.11	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>G|||||1265|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>C|||||4479|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>C|||||4505|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+799G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+799G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+799G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+799G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+799G>C||||||
1	715348	rs3131984	T	G	37421.64	.	AC=838;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>C|||||1342|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>G|||||4402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>G|||||4428|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+876T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+876T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+876T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+876T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+876T>G||||||
1	715367	rs12184277	A	G	657.7	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||1361|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||4383|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||4409|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+895A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+895A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+895A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+895A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+895A>G||||||
1	715517	.	G	C	627.83	.	AC=22;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>G|||||1511|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>C|||||4233|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>C|||||4259|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+1045G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+1045G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+1045G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+1045G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1045G>C||||||
1	715537	rs12184271	C	T	75.4	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>A|||||1531|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>T|||||4239|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+1065C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+1065C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+1065C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+1065C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1065C>T||||||
1	715722	.	G	A	21.25	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||1716|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||4054|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+1250G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+1250G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+1250G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+1250G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1250G>A||||||
1	715767	.	T	C	72.03	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||1761|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||3983|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||4009|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+1295T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+1295T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+1295T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+1295T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1295T>C||||||
1	715771	.	G	A	189.78	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||1765|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||3979|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||4005|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+1299G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+1299G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+1299G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+1299G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1299G>A||||||
1	715846	.	G	A	92.9	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||1840|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||3930|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.323+1374G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.311+1374G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.163+1374G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.156+1374G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1374G>A||||||
1	715925	.	G	A	250.9	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||1919|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||3825|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||3851|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-1392G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-1392G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-1392G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-1392G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1453G>A||||||
1	715996	rs71507457	A	T	8641.47	.	AC=344;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>A|||||1990|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>T|||||3754|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>T|||||3780|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-1321A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-1321A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-1321A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-1321A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1524A>T||||||
1	716041	.	G	A	896.87	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||2035|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||3709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||3735|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-1276G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-1276G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-1276G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-1276G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1569G>A||||||
1	716131	.	C	T	405.28	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>A|||||2125|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>T|||||3619|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>T|||||3645|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-1186C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-1186C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-1186C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-1186C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1659C>T||||||
1	716241	rs116632831	T	C	380.13	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||2235|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||4939|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||3509|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||3535|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1769T>C||||||
1	716363	.	G	A	36.0	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||2357|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||4817|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||3413|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||4957|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-954G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-954G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-954G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-954G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1891G>A||||||
1	716420	.	A	C	5.01	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>G|||||2414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>C|||||4760|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>C|||||3330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>C|||||3356|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>C|||||4900|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-897A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-897A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-897A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-897A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+1948A>C||||||
1	716513	.	C	A	110.01	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>T|||||2507|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>A|||||4667|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>A|||||3237|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>A|||||3263|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>A|||||4807|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-804C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-804C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-804C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-804C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2041C>A||||||
1	716629	.	T	C	196.63	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||2623|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||4551|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||3121|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||3147|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||4691|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-688T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-688T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-688T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-688T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2157T>C||||||
1	716808	.	C	T	59.24	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>A|||||2802|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>T|||||4372|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>T|||||2942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>T|||||2968|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>T|||||4512|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-509C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-509C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-509C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-509C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2336C>T||||||
1	716838	.	T	C	95.77	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||2832|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||4342|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||2912|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||2938|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||4482|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-479T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-479T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-479T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-479T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2366T>C||||||
1	716839	.	A	T	28.49	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>A|||||2833|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>T|||||4341|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>T|||||2911|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>T|||||2937|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>T|||||4481|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-478A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-478A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-478A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-478A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2367A>T||||||
1	716855	.	A	G	11.28	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||2849|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||4325|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||2895|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||2921|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||4465|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-462A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-462A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-462A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-462A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2383A>G||||||
1	717069	.	C	A	64.42	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>T|||||3063|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>A|||||4111|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>A|||||2681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>A|||||2707|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>A|||||4251|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-248C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-248C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-248C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-248C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2597C>A||||||
1	717128	.	G	A	31.81	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||3122|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||4052|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||2622|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||2648|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||4192|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-189G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-189G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-189G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-189G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2656G>A||||||
1	717183	.	A	G	29.61	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||3177|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||3997|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||2567|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||2593|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||4137|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|1/2|n.324-134A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|1/1|n.312-134A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|1/3|n.164-134A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|1/3|n.157-134A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+2711A>G||||||
1	717474	.	C	T	2285.66	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>A|||||3468|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>T|||||3706|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>T|||||2276|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>T|||||2302|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>T|||||3846|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+51C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3002C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/3|n.481C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|2/2|n.469C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/4|n.314C>T||||||
1	717485	rs12184279	C	A	429.25	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>T|||||3479|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>A|||||3695|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>A|||||2265|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>A|||||2291|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>A|||||3835|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+62C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3013C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/3|n.492C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|2/2|n.480C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/4|n.325C>A||||||
1	717486	.	G	A	132.71	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||3480|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||3694|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||2264|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||2290|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||3834|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+63G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3014G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/3|n.493G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA|2/2|n.481G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/4|n.326G>A||||||
1	717587	.	G	A	519.11	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||3581|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||3593|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||2163|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||2189|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||3733|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||16|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+71G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+164G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.356+71G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3115G>A||||||
1	717627	.	C	G	1087.1	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>C|||||3621|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>G|||||3553|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>G|||||2123|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>G|||||2149|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>G|||||3693|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566C>G|||||56|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+111C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+204C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.356+111C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3155C>G||||||
1	717805	.	A	C	94.85	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>G|||||3799|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>C|||||3375|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>C|||||1945|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>C|||||1971|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>C|||||3515|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>C|||||234|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+289A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+382A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.356+289A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3333A>C||||||
1	717900	.	T	C	64.8	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||3894|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||3280|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||1850|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||1876|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||3420|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||329|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+384T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+477T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.356+384T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3428T>C||||||
1	717933	.	T	C	42.59	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||3927|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||3247|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||1817|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||1843|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||3387|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||362|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+417T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.270+510T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.356+417T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3461T>C||||||
1	718012	.	C	T	78.39	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>A|||||4006|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>T|||||3168|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>T|||||1738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>T|||||1764|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>T|||||3308|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566C>T|||||441|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+496C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.271-479C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.357-479C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3540C>T||||||
1	718284	.	C	T	172.31	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1G>A|||||4278|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>T|||||2896|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1C>T|||||1466|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1C>T|||||1492|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>T|||||3036|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566C>T|||||713|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+768C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.271-207C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.357-207C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3812C>T||||||
1	718310	.	A	G	5.71	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||4304|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||2870|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||1440|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||1466|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||3010|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||739|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+794A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.271-181A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.357-181A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3838A>G||||||
1	718335	.	A	G	299.03	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||4329|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||2845|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||1415|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||1441|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||2985|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||764|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+819A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.271-156A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.357-156A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3863A>G||||||
1	718336	.	T	C	79.83	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||4330|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||2844|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||1414|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||1440|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||2984|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||765|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+820T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.271-155T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.357-155T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3864T>C||||||
1	718386	rs10900602	A	G	22220.07	.	AC=672;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||4380|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||2794|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||1364|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||1390|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||2934|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||815|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+870A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.271-105A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.357-105A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3914A>G||||||
1	718455	.	T	C	12.33	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||4449|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||2725|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||1295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||1321|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||2865|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||884|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+939T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|2/3|n.271-36T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|2/3|n.357-36T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+3983T>C||||||
1	718492	.	G	A	39.75	.	AC=3;ANN=A|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/4|n.272G>A||||||,A|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/4|n.358G>A||||||,A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||4486|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||2688|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||1258|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||1284|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||2828|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||921|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+976G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+4020G>A||||||
1	718505	.	G	A	300.33	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||4499|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||2675|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||1245|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||1271|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||2815|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||934|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+4033G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/4|n.285G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/4|n.371G>A||||||
1	718555	rs10751453	T	C	45655.62	.	AC=986;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1A>G|||||4549|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||2625|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||1195|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||1221|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||2765|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||984|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.523+1039T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+4083T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/4|n.335T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/4|n.421T>C||||||
1	718638	.	G	A	289.91	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1C>T|||||4632|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||2542|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1G>A|||||1112|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1G>A|||||1138|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||2682|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||1067|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-1112G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+4166G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/4|n.418G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/4|n.504G>A||||||
1	718782	.	A	G	350.28	.	AC=31;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.2|ENSG00000228327|transcript|ENST00000428504|lincRNA||n.-1T>C|||||4776|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||2398|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||968|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||994|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||2538|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||1211|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-968A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/3|n.523+39A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/3|n.609+39A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+4310A>G||||||
1	719097	rs4498745	A	C	286.13	.	AC=33;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>C|||||2083|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>C|||||653|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>C|||||679|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>C|||||2223|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>C|||||1526|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-653A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/3|n.523+354A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/3|n.609+354A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+4625A>C||||||
1	719371	.	A	G	31.11	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||1809|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||379|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||405|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||1949|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||1800|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-379A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/3|n.524-379A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/3|n.610-379A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+4899A>G||||||
1	719484	.	A	G	115.03	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||1696|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||292|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||1836|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||1913|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-266A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/3|n.524-266A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/3|n.610-266A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5012A>G||||||
1	719511	.	A	G	69.08	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||1669|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||239|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||265|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||1809|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||1940|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-239A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/3|n.524-239A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/3|n.610-239A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5039A>G||||||
1	719604	.	T	C	104.93	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||1576|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1T>C|||||146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1T>C|||||172|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||1716|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||2033|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-146T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/3|n.524-146T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/3|n.610-146T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5132T>C||||||
1	719643	.	A	G	38.38	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||1537|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.-1A>G|||||107|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.-1A>G|||||133|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||1677|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||2072|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|2/2|n.524-107A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|3/3|n.524-107A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|3/3|n.610-107A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5171A>G||||||
1	719809	.	T	C	9.24	.	AC=1;ANN=C|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA|4/4|n.669T>C||||||,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||1371|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||1511|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||2238|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5337T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|3/3|n.583T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|4/4|n.583T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA|1/1|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA|1/1|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/2|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/2|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/2|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/5|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/4|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/3|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/4|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/4|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/4|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/7|n.34T>C||||||
1	719873	rs114149602	G	T	13.69	.	AC=1;ANN=T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/2|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/2|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/2|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/5|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/4|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/3|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/4|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/4|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/4|n.124G>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/7|n.98G>T||||||,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>T|||||1307|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>T|||||1447|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>T|||||2302|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>T|||||64|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5401G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|3/3|n.647G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|4/4|n.647G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA|1/1|n.124G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA|1/1|n.124G>T||||||
1	719914	.	C	G	470.42	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>G|||||1266|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>G|||||1406|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566C>G|||||2343|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>G|||||105|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5442C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+41C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+41C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA|3/3|n.688C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA|4/4|n.688C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA|1/1|n.165C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA|1/1|n.165C>G||||||
1	720134	.	G	A	118.27	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||1046|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||1186|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||64|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||2563|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||99|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||325|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5662G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+261G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA|1/1|n.385G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA|1/1|n.385G>A||||||
1	720223	.	G	A	563.59	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||957|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||1097|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||153|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||2652|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||188|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||414|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||84|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5751G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+350G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA|1/1|n.474G>A||||||
1	720240	rs3121393	T	C	31525.87	.	AC=813;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||940|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||1080|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||170|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||2669|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||205|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||431|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||101|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5768T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+367T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+367T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA|1/1|n.491T>C||||||
1	720381	rs116801199	G	T	1109.51	.	AC=37;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>T|||||799|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>T|||||939|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>T|||||311|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>T|||||2810|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>T|||||346|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>T|||||572|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>T|||||242|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>T|||||24|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5909G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+508G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+508G>T||||||
1	720416	.	A	T	31.95	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>T|||||764|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>T|||||904|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>T|||||346|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>T|||||2845|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>T|||||381|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>T|||||607|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>T|||||277|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>T|||||59|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5944A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+543A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+543A>T||||||
1	720468	.	G	A	131.41	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||712|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||852|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||398|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||2897|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||433|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||659|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||329|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||111|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+5996G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+595G>A||||||
1	720583	.	G	A	1079.01	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||597|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||737|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||513|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||3012|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||548|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||774|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||444|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||226|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6111G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+710G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+710G>A||||||
1	720605	.	G	A	411.59	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||575|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||715|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||535|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||3034|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||570|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||796|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||466|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||248|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6133G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+732G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+732G>A||||||
1	720681	.	T	C	77.94	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||499|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||639|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||611|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||3110|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||646|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||872|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||542|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||324|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6209T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+808T>C||||||
1	720797	rs75530702	G	A	30550.08	.	AC=785;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>A|||||383|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>A|||||523|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||727|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||3226|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||762|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||988|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||658|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||440|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6325G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+924G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+924G>A||||||
1	720865	rs79676503	C	T	36.35	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>T|||||315|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>T|||||455|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||795|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566C>T|||||3294|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||830|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||1056|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||726|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||508|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6393C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-908C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+992C>T||||||
1	720968	.	G	C	49.62	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1G>C|||||212|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>C|||||352|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>C|||||898|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>C|||||3397|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>C|||||933|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>C|||||1159|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>C|||||829|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>C|||||611|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6496G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-805G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1095G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1095G>C||||||
1	721006	.	A	G	211.91	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||174|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||314|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||936|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||3435|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||971|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||1197|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||867|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||649|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6534A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-767A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1133A>G||||||
1	721054	.	T	C	36.38	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1T>C|||||126|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>C|||||266|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||984|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||3483|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||1019|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||1245|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||915|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||697|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6582T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-719T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1181T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1181T>C||||||
1	721119	rs115019173	C	T	1100.48	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1C>T|||||61|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1C>T|||||201|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||1049|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566C>T|||||3548|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||1084|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||1310|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||980|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||762|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6647C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-654C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1246C>T||||||
1	721124	rs3131983	A	G	14025.67	.	AC=227;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||56|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||196|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||1054|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||3553|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||1089|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||1315|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||985|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||767|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6652A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-649A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1251A>G||||||
1	721168	.	A	G	1345.65	.	AC=90;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.-1A>G|||||12|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||152|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||1098|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||3597|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||1133|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||1359|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||1029|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||811|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6696A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-605A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1295A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1295A>G||||||
1	721237	.	T	A	72.75	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1T>A|||||83|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||1167|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>A|||||3666|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||1202|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||1428|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||1098|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||880|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6765T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-536T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1364T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1364T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.58T>A||||||
1	721243	.	A	G	36.66	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1A>G|||||77|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||1173|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||3672|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||1208|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||1434|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||1104|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||886|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6771A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-530A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1370A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.64A>G||||||
1	721290	rs12565286	G	C	1332.28	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.-1G>C|||||30|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>C|||||1220|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>C|||||3719|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>C|||||1255|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>C|||||1481|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>C|||||1151|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>C|||||933|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6818G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-483G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1417G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.111G>C||||||
1	721450	rs2977675	G	A	362.52	.	AC=32;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||1380|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||3879|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||1415|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||1641|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||1311|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||1093|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+6978G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1577G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1577G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.271G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA|1/1|n.131G>A||||||
1	721705	.	A	G	1393.92	.	AC=28;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||1635|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||4134|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||1670|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||1896|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||1566|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||1348|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+7233A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-68A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1832A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.526A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA|1/1|n.386A>G||||||
1	721735	.	T	A	6.79	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||1665|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>A|||||4164|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||1700|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||1926|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||1596|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||1378|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+7263T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-38T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1862T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1862T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.556T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA|1/1|n.416T>A||||||
1	721757	.	T	A	409.17	.	AC=22;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||1687|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>A|||||4186|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||1722|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||1948|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||1618|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||1400|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+7285T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|1/1|n.125-16T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+1884T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+1884T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.578T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA|1/1|n.438T>A||||||
1	721996	.	G	A	80.43	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||1926|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566G>A|||||4425|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||1961|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||2187|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||1857|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||1639|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+7524G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2123G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2123G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.817G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA|2/2|n.348G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA|1/1|n.677G>A||||||
1	722361	.	A	G	14.72	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||2291|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||4790|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||2326|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||2552|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||2222|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||2004|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||115|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+7889A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2488A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1182A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA|1/1|n.1042A>G||||||
1	722519	.	A	G	113.34	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||2449|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566A>G|||||4948|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||2484|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||2710|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||2380|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||2162|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||273|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||6|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8047A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2646A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2646A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1340A>G||||||
1	722559	.	T	C	2576.52	.	AC=69;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||2489|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000457084|lincRNA||n.*566T>C|||||4988|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||2524|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||2750|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||2420|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||2202|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||313|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||46|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8087T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2686T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2686T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1380T>C||||||
1	722603	.	T	C	857.45	.	AC=35;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||2533|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||2568|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||2794|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||2464|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||2246|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||357|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||90|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8131T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2730T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1424T>C||||||
1	722670	rs116030099	T	C	7538.74	.	AC=117;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||2600|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||2635|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||2861|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||2531|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||2313|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||424|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||157|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8198T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2797T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2797T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1491T>C||||||
1	722672	.	C	T	319.47	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||2602|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||2637|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||2863|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||2533|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||2315|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||426|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||159|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8200C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2799C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2799C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1493C>T||||||
1	722711	.	A	C	81.79	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>C|||||2641|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>C|||||2676|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>C|||||2902|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>C|||||2572|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>C|||||2354|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||465|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||198|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8239A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+2838A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+2838A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1532A>C||||||
1	722980	rs114222710	C	T	1885.36	.	AC=56;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||2910|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||2945|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||3171|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||2841|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||2623|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||734|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||467|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8508C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3107C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1801C>T||||||
1	722981	.	G	A	386.12	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||2911|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||2946|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||3172|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||2842|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||2624|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||735|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||468|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8509G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3108G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3108G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA|1/1|n.1802G>A||||||
1	723183	.	G	A	105.41	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||131|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||3113|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||3148|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||3374|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||3044|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||2826|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||937|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||670|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8711G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3310G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3310G>A||||||
1	723227	.	A	G	170.24	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||175|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||3157|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||3192|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||3418|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||3088|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||2870|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||981|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||714|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8755A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3354A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3354A>G||||||
1	723307	rs28659788	C	G	674.82	.	AC=22;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||255|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||3237|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>G|||||3272|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>G|||||3498|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||3168|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||2950|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||1061|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||794|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8835C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3434C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3434C>G||||||
1	723329	.	A	T	131.86	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||277|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>T|||||3259|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>T|||||3294|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>T|||||3520|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>T|||||3190|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>T|||||2972|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||1083|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||816|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8857A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3456A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3456A>T||||||
1	723379	.	T	A	55.01	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||327|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||3309|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||3344|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||3570|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||3240|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||3022|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||1133|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||866|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+8907T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3506T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3506T>A||||||
1	723608	.	G	A	81.08	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||556|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||3538|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||3573|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||3799|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||3469|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3251|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||1362|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1095|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3735G>A||||||
1	723742	rs28375378	T	C	464.59	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||690|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||3672|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||3707|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||3933|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||3603|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||3385|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||1496|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||1229|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9270T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3869T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3869T>C||||||
1	723789	.	G	A	42.28	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||737|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||3719|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||3754|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||3980|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||3650|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3432|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||1543|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1276|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9317G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3916G>A||||||
1	723819	rs11804171	T	A	14458.79	.	AC=172;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||767|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||3749|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||3784|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||4010|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||3680|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||3462|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||1573|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||1306|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9347T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+3946T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+3946T>A||||||
1	723891	rs2977670	G	C	73915.94	.	AC=954;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||839|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>C|||||3821|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>C|||||3856|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>C|||||4082|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>C|||||3752|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>C|||||3534|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||1645|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||1378|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9419G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+4018G>C||||||
1	723918	.	G	A	2954.92	.	AC=51;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||866|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||3848|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||3883|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||4109|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||3779|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3561|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||1672|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1405|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9446G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4045G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.98+4045G>A||||||
1	724103	rs111533735	A	G	5342.75	.	AC=56;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1051|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4033|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4068|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4294|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||3964|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||3746|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||1857|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||1590|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9631A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4159A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4159A>G||||||
1	724145	.	T	A	43.79	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||1093|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||4075|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||4110|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||4336|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||4006|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||3788|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||1899|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||1632|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9673T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4272T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4272T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4117T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4272T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4272T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4272T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4272T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4272T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4117T>A||||||
1	724159	.	A	G	39.66	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1107|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4089|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4124|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4350|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4020|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||3802|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||1913|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||1646|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9687A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4286A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4286A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4103A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4286A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4286A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4286A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4286A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4286A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4103A>G||||||
1	724164	.	A	G	147.92	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1112|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4094|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4129|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4355|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4025|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||3807|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||1918|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||1651|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9692A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4098A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4098A>G||||||
1	724184	.	A	G	730.53	.	AC=24;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1132|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4114|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4149|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4375|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4045|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||3827|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||1938|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||1671|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9712A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4078A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4078A>G||||||
1	724188	.	A	G	336.91	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1136|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4118|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4153|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4379|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4049|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||3831|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||1942|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||1675|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9716A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4315A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4315A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4074A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4315A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4315A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4315A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4315A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4315A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4074A>G||||||
1	724189	rs75912128	G	A	12771.32	.	AC=168;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1137|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4119|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4154|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||4380|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4050|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3832|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||1943|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1676|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9717G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4316G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4316G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4073G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4316G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4316G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4316G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4316G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4316G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4073G>A||||||
1	724194	rs12065699	G	A	16480.82	.	AC=168;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1142|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4124|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4159|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||4385|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4055|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3837|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||1948|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1681|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9722G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4321G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4321G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4068G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4321G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4321G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4321G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4321G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4321G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4068G>A||||||
1	724199	.	A	G	223.63	.	AC=35;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1147|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4129|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4164|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4390|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4060|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||3842|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||1953|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||1686|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9727A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4063A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4063A>G||||||
1	724205	rs111638339	C	A	14070.35	.	AC=132;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1153|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4135|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4170|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>A|||||4396|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4066|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||3848|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||1959|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||1692|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9733C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4057C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4057C>A||||||
1	724207	.	G	A	43.67	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1155|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4137|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4172|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||4398|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4068|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3850|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||1961|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1694|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9735G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4055G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4055G>A||||||
1	724214	.	A	G	38.06	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1162|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4144|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4179|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4405|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4075|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||3857|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||1968|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||1701|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9742A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4341A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4341A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4048A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4341A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4341A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4341A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4341A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4341A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4048A>G||||||
1	724225	rs61769357	C	T	1800.73	.	AC=39;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||1173|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||4155|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||4190|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||4416|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||4086|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||3868|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||1979|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||1712|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9753C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4352C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4352C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4037C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4352C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4352C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4352C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4352C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4352C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4037C>T||||||
1	724240	.	C	T	517.31	.	AC=25;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||1188|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||4170|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||4205|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||4431|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||4101|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||3883|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||1994|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||1727|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9768C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4367C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4367C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4022C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4367C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4367C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4367C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4367C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4367C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4022C>T||||||
1	724244	.	C	A	382.43	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1192|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4174|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4209|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>A|||||4435|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4105|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||3887|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||1998|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||1731|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9772C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4371C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4371C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4018C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4371C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4371C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4371C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4371C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4371C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4018C>A||||||
1	724246	.	C	G	206.67	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||1194|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||4176|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>G|||||4211|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>G|||||4437|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4107|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||3889|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2000|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||1733|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9774C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4373C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4373C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4016C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4373C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4373C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4373C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4373C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4373C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4016C>G||||||
1	724260	.	C	T	239.27	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||1208|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||4190|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||4225|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||4451|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||4121|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||3903|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||2014|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||1747|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9788C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4387C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4387C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-4002C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4387C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4387C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4387C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4387C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4387C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-4002C>T||||||
1	724285	.	C	T	2135.62	.	AC=87;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||1233|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||4215|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||4250|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||4476|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||4146|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||3928|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||2039|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||1772|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9813C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3977C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3977C>T||||||
1	724286	.	G	A	121.51	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1234|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4216|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4251|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||4477|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4147|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3929|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2040|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1773|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9814G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3976G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3976G>A||||||
1	724300	rs12069907	C	T	12989.2	.	AC=126;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||1248|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||4230|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||4265|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>T|||||4491|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||4161|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||3943|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||2054|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||1787|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9828C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4427C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4427C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3962C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4427C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4427C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4427C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4427C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4427C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3962C>T||||||
1	724319	.	C	G	69.19	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||1267|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||4249|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>G|||||4284|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>G|||||4510|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4180|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||3962|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2073|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||1806|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9847C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4446C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4446C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3943C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4446C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4446C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4446C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4446C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4446C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3943C>G||||||
1	724324	rs28692873	G	A	6324.79	.	AC=45;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1272|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4254|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4289|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>A|||||4515|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4185|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||3967|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2078|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||1811|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9852G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3938G>A||||||
1	724401	.	T	C	49.45	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||1349|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||4331|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||4366|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||4592|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||4262|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||4044|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||2155|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||1888|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9929T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3861T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3861T>C||||||
1	724457	.	G	C	35.8	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||1405|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>C|||||4387|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>C|||||4422|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669G>C|||||4648|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>C|||||4318|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>C|||||4100|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||2211|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||1944|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+9985G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4584G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4584G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3805G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4584G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4584G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4584G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4584G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4584G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3805G>C||||||
1	724475	.	T	A	1459.56	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||1423|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||4405|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||4440|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||4666|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||4336|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||4118|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||2229|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||1962|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10003T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4602T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4602T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3787T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4602T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4602T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4602T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4602T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4602T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3787T>A||||||
1	724491	.	C	G	288.5	.	AC=39;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||1439|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||4421|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>G|||||4456|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>G|||||4682|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4352|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4134|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2245|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||1978|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10019C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4618C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4618C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3771C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4618C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4618C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4618C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4618C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4618C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3771C>G||||||
1	724516	.	C	A	586.69	.	AC=46;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1464|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4446|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4481|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>A|||||4707|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4377|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4159|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2270|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2003|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10044C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4643C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4643C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3746C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4643C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4643C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4643C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4643C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4643C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3746C>A||||||
1	724534	.	C	A	1300.35	.	AC=71;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1482|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4464|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4499|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>A|||||4725|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4395|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4177|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2288|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2021|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10062C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4661C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4661C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3728C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4661C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4661C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4661C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4661C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4661C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3728C>A||||||
1	724545	.	T	C	325.79	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||1493|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||4475|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||4510|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>C|||||4736|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||4406|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||4188|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||2299|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||2032|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10073T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4672T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4672T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3717T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4672T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4672T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4672T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4672T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4672T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3717T>C||||||
1	724546	.	A	G	1634.35	.	AC=90;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1494|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4476|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4511|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4737|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4407|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4189|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2300|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2033|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10074A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4673A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4673A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3716A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4673A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4673A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4673A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4673A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4673A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3716A>G||||||
1	724572	.	A	G	492.37	.	AC=44;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1520|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4502|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4537|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4763|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4433|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4215|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2326|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2059|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10100A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3690A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3690A>G||||||
1	724588	.	A	T	1047.36	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||1536|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>T|||||4518|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>T|||||4553|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>T|||||4779|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>T|||||4449|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>T|||||4231|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||2342|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||2075|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10116A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4715A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4715A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3674A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4715A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4715A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4715A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4715A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4715A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3674A>T||||||
1	724640	.	T	A	45.3	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||1588|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||4570|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||4605|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||4831|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||4501|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||4283|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||2394|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||2127|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10168T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4767T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4767T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3622T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4767T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4767T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4767T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4767T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4767T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3622T>A||||||
1	724695	.	T	G	880.94	.	AC=61;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||1643|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>G|||||4625|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>G|||||4660|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>G|||||4886|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>G|||||4556|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>G|||||4338|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||2449|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||2182|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10223T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4822T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4822T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3567T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4822T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4822T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4822T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4822T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4822T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3567T>G||||||
1	724714	rs117867596	A	T	2001.2	.	AC=86;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||1662|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>T|||||4644|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>T|||||4679|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>T|||||4905|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>T|||||4575|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>T|||||4357|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||2468|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||2201|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10242A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4841A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4841A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3548A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4841A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4841A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4841A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4841A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4841A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3548A>T||||||
1	724728	.	T	A	2288.79	.	AC=106;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||1676|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||4658|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||4693|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669T>A|||||4919|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||4589|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||4371|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||2482|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||2215|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10256T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4855T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4855T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3534T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4855T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4855T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4855T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4855T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4855T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3534T>A||||||
1	724761	.	A	G	100.72	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1709|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4691|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4726|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669A>G|||||4952|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4622|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4404|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2515|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2248|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10289A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3501A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3501A>G||||||
1	724804	.	C	A	599.52	.	AC=40;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1752|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4734|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4769|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>A|||||4995|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4665|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4447|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2558|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2291|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10332C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4931C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4931C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3458C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4931C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4931C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4931C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4931C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4931C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3458C>A||||||
1	724806	.	C	G	298.98	.	AC=22;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||1754|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||4736|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>G|||||4771|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000609830|lincRNA||n.*669C>G|||||4997|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4667|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4449|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2560|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2293|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10334C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4933C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4933C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3456C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4933C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4933C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4933C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4933C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4933C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3456C>G||||||
1	724815	.	C	T	9322.37	.	AC=99;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||1763|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>T|||||4745|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>T|||||4780|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>T|||||4676|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4458|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||2569|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2302|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10343C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3447C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3447C>T||||||
1	724849	rs12126395	C	A	2954.74	.	AC=142;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1797|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4779|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4814|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4710|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4492|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2603|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2336|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10377C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4976C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4976C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3413C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4976C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4976C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4976C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4976C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4976C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3413C>A||||||
1	724861	rs12123401	G	A	9985.74	.	AC=240;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1809|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4791|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4826|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4722|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4504|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2615|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2348|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10389G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4988G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4988G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3401G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4988G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4988G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4988G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4988G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4988G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3401G>A||||||
1	724862	.	G	A	153.58	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1810|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4792|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4827|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4723|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4505|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2616|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2349|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10390G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3400G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4989G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3400G>A||||||
1	724864	.	A	G	514.14	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1812|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4794|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4829|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4725|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4507|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2618|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2351|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10392A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3398A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3398A>G||||||
1	724869	rs12735556	C	A	23389.53	.	AC=401;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1817|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4799|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4834|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4730|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4512|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2623|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2356|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10397C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4996C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4996C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3393C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4996C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4996C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4996C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4996C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4996C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3393C>A||||||
1	724871	rs12735557	C	G	21285.57	.	AC=353;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||1819|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||4801|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>G|||||4836|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4732|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4514|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2625|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2358|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10399C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+4998C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+4998C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3391C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+4998C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+4998C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+4998C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+4998C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+4998C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3391C>G||||||
1	724916	.	T	G	627.77	.	AC=65;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||1864|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>G|||||4846|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>G|||||4881|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>G|||||4777|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>G|||||4559|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||2670|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||2403|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10444T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5043T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5043T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3346T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5043T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5043T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5043T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5043T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5043T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3346T>G||||||
1	724919	.	G	A	2010.11	.	AC=137;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1867|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4849|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4884|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4780|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4562|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2673|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2406|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10447G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5046G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5046G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3343G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5046G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5046G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5046G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5046G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5046G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3343G>A||||||
1	724924	.	T	A	1847.54	.	AC=141;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||1872|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||4854|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||4889|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||4785|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||4567|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||2678|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||2411|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10452T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5051T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5051T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3338T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5051T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5051T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5051T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5051T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5051T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3338T>A||||||
1	724926	.	T	G	1341.73	.	AC=112;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||1874|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>G|||||4856|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>G|||||4891|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>G|||||4787|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>G|||||4569|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||2680|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||2413|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10454T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5053T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5053T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3336T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5053T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5053T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5053T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5053T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5053T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3336T>G||||||
1	724931	.	T	G	10187.0	.	AC=106;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||1879|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>G|||||4861|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>G|||||4896|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>G|||||4792|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>G|||||4574|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||2685|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||2418|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10459T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5058T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5058T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3331T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5058T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5058T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5058T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5058T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5058T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3331T>G||||||
1	724933	.	A	G	172.08	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1881|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4863|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4898|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4794|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4576|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2687|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2420|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10461A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5060A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5060A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3329A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5060A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5060A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5060A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5060A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5060A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3329A>G||||||
1	724943	.	A	T	520.56	.	AC=22;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||1891|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>T|||||4873|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>T|||||4908|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>T|||||4804|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>T|||||4586|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||2697|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||2430|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10471A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3319A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3319A>T||||||
1	724948	.	T	A	29255.42	.	AC=333;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||1896|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>A|||||4878|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>A|||||4913|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>A|||||4809|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>A|||||4591|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||2702|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||2435|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10476T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5075T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5075T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3314T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5075T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5075T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5075T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5075T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5075T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3314T>A||||||
1	724950	.	T	C	14968.1	.	AC=106;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||1898|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||4880|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||4915|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||4811|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||4593|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||2704|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||2437|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10478T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5077T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5077T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3312T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5077T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5077T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5077T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5077T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5077T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3312T>C||||||
1	724953	.	A	T	17733.62	.	AC=219;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||1901|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>T|||||4883|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>T|||||4918|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>T|||||4814|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>T|||||4596|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||2707|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||2440|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10481A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5080A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5080A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3309A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5080A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5080A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5080A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5080A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5080A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3309A>T||||||
1	724956	.	G	A	53421.12	.	AC=291;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||1904|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>A|||||4886|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>A|||||4921|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4817|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4599|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2710|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2443|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10484G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3306G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3306G>A||||||
1	724959	.	A	G	40.11	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1907|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4889|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4924|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4820|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4602|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2713|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2446|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10487A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5086A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5086A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3303A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5086A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5086A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5086A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5086A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5086A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3303A>G||||||
1	724972	.	A	G	2885.49	.	AC=65;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1920|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4902|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4937|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4833|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4615|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2726|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2459|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10500A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5099A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5099A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3290A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5099A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5099A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5099A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5099A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5099A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3290A>G||||||
1	724979	.	C	A	44831.77	.	AC=234;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||1927|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4909|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>A|||||4944|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4840|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4622|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2733|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2466|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10507C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5106C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5106C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3283C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5106C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5106C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5106C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5106C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5106C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3283C>A||||||
1	724981	rs62636326	A	G	435.66	.	AC=44;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||1929|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>G|||||4911|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809A>G|||||4946|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4842|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4624|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2735|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2468|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10509A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5108A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5108A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3281A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5108A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5108A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5108A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5108A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5108A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3281A>G||||||
1	724997	.	G	T	35.54	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||1945|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844G>T|||||4927|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809G>T|||||4962|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>T|||||4858|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>T|||||4640|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||2751|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||2484|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10525G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5124G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5124G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3265G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5124G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5124G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5124G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5124G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5124G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3265G>T||||||
1	725001	rs62636328	C	G	34.26	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||1949|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||4931|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809C>G|||||4966|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4862|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4644|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2755|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2488|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10529C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5128C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5128C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3261C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5128C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5128C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5128C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5128C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5128C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3261C>G||||||
1	725026	.	T	C	1180.07	.	AC=93;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||1974|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||4956|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||4991|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||4887|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||4669|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||2780|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||2513|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10554T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5153T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5153T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3236T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5153T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5153T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5153T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5153T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5153T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3236T>C||||||
1	725031	.	T	C	171.1	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||1979|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844T>C|||||4961|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589899|lincRNA||n.*809T>C|||||4996|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390T>C|||||4892|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||4674|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||2785|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||2518|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10559T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3231T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3231T>C||||||
1	725054	.	C	A	364.35	.	AC=45;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2002|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>A|||||4984|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4915|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4697|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2808|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2541|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10582C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3208C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3208C>A||||||
1	725056	.	C	G	338.4	.	AC=43;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2004|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844C>G|||||4986|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4917|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4699|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2810|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2543|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10584C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5183C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5183C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3206C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5183C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5183C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5183C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5183C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5183C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3206C>G||||||
1	725060	.	A	T	2179.36	.	AC=125;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||2008|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000434264|lincRNA||n.*844A>T|||||4990|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>T|||||4921|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>T|||||4703|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||2814|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||2547|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10588A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5187A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5187A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3202A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5187A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5187A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5187A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5187A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5187A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3202A>T||||||
1	725091	.	G	C	100.27	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2039|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>C|||||4952|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>C|||||4734|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||2845|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||2578|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10619G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5218G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5218G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3171G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5218G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5218G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5218G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5218G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5218G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3171G>C||||||
1	725104	.	C	A	18753.19	.	AC=245;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2052|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>A|||||4965|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>A|||||4747|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||2858|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||2591|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10632C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5231C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5231C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3158C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5231C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5231C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5231C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5231C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5231C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3158C>A||||||
1	725106	.	C	G	17295.11	.	AC=221;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2054|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4967|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4749|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2860|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2593|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10634C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5233C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5233C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3156C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5233C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5233C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5233C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5233C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5233C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3156C>G||||||
1	725107	.	G	A	716.89	.	AC=47;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2055|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390G>A|||||4968|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4750|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2861|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2594|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10635G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5234G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5234G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3155G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5234G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5234G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5234G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5234G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5234G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3155G>A||||||
1	725127	.	A	G	13313.24	.	AC=193;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2075|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390A>G|||||4988|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4770|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2881|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2614|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10655A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5254A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5254A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3135A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5254A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5254A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5254A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5254A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5254A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3135A>G||||||
1	725132	.	C	G	14557.55	.	AC=186;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2080|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585826|lincRNA||n.*390C>G|||||4993|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4775|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||2886|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2619|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10660C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5259C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5259C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3130C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5259C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5259C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5259C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5259C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5259C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3130C>G||||||
1	725181	.	C	T	1856.19	.	AC=25;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2129|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4824|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||2935|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2668|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10709C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5308C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5308C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3081C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5308C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5308C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5308C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5308C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5308C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3081C>T||||||
1	725184	.	G	C	190.66	.	AC=25;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2132|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>C|||||4827|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||2938|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||2671|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10712G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3078G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3078G>C||||||
1	725196	.	G	A	2000.65	.	AC=33;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2144|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4839|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2950|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2683|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10724G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3066G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3066G>A||||||
1	725199	.	G	A	475.05	.	AC=54;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2147|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4842|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||2953|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2686|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10727G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5326G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5326G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3063G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5326G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5326G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5326G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5326G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5326G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3063G>A||||||
1	725211	.	C	T	825.68	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2159|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4854|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||2965|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2698|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10739C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5338C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5338C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3051C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5338C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5338C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5338C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5338C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5338C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3051C>T||||||
1	725234	.	A	G	56.78	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2182|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4877|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||2988|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2721|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10762A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5361A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5361A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3028A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5361A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5361A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5361A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5361A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5361A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3028A>G||||||
1	725239	.	C	T	689.7	.	AC=53;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2187|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4882|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||2993|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2726|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10767C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5366C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5366C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3023C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5366C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5366C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5366C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5366C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5366C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3023C>T||||||
1	725245	.	T	C	1255.95	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||2193|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608T>C|||||4888|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||2999|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||2732|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10773T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5372T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5372T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3017T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5372T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5372T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5372T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5372T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5372T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3017T>C||||||
1	725249	.	A	G	661.62	.	AC=24;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2197|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4892|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3003|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2736|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10777A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5376A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5376A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3013A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5376A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5376A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5376A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5376A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5376A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3013A>G||||||
1	725252	.	G	A	789.46	.	AC=26;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2200|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4895|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3006|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2739|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10780G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5379G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5379G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3010G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5379G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5379G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5379G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5379G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5379G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3010G>A||||||
1	725256	.	C	T	2339.57	.	AC=36;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2204|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4899|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3010|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2743|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10784C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3006C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3006C>T||||||
1	725257	.	G	T	529.31	.	AC=29;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2205|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>T|||||4900|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3011|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||2744|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10785G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5384G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5384G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3005G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5384G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5384G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5384G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5384G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5384G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3005G>T||||||
1	725267	.	G	T	1213.49	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2215|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>T|||||4910|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3021|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||2754|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10795G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5394G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5394G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2995G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5394G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5394G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5394G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5394G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5394G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2995G>T||||||
1	725270	.	C	T	622.19	.	AC=56;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2218|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4913|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3024|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2757|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10798C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2992C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2992C>T||||||
1	725275	.	C	T	1767.6	.	AC=50;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2223|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4918|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3029|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2762|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10803C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5402C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5402C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2987C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5402C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5402C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5402C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5402C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5402C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2987C>T||||||
1	725280	.	C	T	328.3	.	AC=38;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2228|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4923|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3034|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2767|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10808C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5407C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5407C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2982C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5407C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5407C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5407C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5407C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5407C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2982C>T||||||
1	725285	.	C	T	127.7	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2233|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4928|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3039|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2772|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10813C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2977C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5412C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2977C>T||||||
1	725286	.	G	A	413.06	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2234|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4929|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3040|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2773|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10814G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2976G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5413G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2976G>A||||||
1	725287	.	C	G	48.56	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2235|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4930|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3041|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2774|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10815C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5414C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5414C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2975C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5414C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5414C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5414C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5414C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5414C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2975C>G||||||
1	725296	.	C	T	118.28	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2244|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>T|||||4939|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3050|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2783|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10824C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2966C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2966C>T||||||
1	725297	.	G	A	748.58	.	AC=43;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2245|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4940|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3051|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2784|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10825G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5424G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5424G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2965G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5424G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5424G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5424G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5424G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5424G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2965G>A||||||
1	725301	.	C	G	13113.33	.	AC=74;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2249|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4944|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3055|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2788|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10829C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5428C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5428C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2961C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5428C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5428C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5428C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5428C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5428C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2961C>G||||||
1	725302	.	G	A	47.95	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2250|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4945|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3056|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2789|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10830G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5429G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5429G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2960G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5429G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5429G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5429G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5429G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5429G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2960G>A||||||
1	725304	.	A	G	10.09	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2252|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4947|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3058|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2791|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10832A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5431A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5431A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2958A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5431A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5431A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5431A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5431A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5431A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2958A>G||||||
1	725316	.	G	A	467.29	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2264|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4959|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3070|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2803|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10844G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5443G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5443G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2946G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5443G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5443G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5443G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5443G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5443G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2946G>A||||||
1	725326	.	G	T	854.83	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2274|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>T|||||4969|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3080|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||2813|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10854G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5453G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5453G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2936G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5453G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5453G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5453G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5453G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5453G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2936G>T||||||
1	725327	.	G	C	87.72	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2275|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>C|||||4970|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3081|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||2814|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10855G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5454G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5454G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2935G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5454G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5454G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5454G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5454G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5454G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2935G>C||||||
1	725332	.	G	A	762.07	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2280|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4975|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3086|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2819|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10860G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2930G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2930G>A||||||
1	725337	.	C	G	2583.03	.	AC=89;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2285|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4980|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3091|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2824|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10865C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5464C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5464C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2925C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5464C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5464C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5464C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5464C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5464C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2925C>G||||||
1	725343	.	A	G	185.05	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2291|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608A>G|||||4986|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3097|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||2830|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10871A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5470A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5470A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2919A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5470A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5470A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5470A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5470A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5470A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2919A>G||||||
1	725346	.	C	G	760.13	.	AC=43;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2294|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608C>G|||||4989|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3100|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2833|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10874C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5473C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5473C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2916C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5473C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5473C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5473C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5473C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5473C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2916C>G||||||
1	725347	.	G	A	147.03	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2295|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000592547|lincRNA||n.*608G>A|||||4990|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3101|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2834|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10875G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.124+5474G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5474G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2915G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5474G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5474G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5474G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5474G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5474G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2915G>A||||||
1	725389	rs115633993	C	T	2845.4	.	AC=61;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2337|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3143|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2876|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10917C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5461C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5516C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2873C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5516C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5516C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5516C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5516C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5516C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2873C>T||||||
1	725401	.	C	T	1219.82	.	AC=26;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2349|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3155|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||2888|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10929C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5449C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5528C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2861C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5528C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5528C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5528C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5528C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5528C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2861C>T||||||
1	725432	.	G	T	40.09	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2380|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3186|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||2919|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10960G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5418G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5559G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2830G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5559G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5559G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5559G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5559G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5559G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2830G>T||||||
1	725452	.	G	C	59.62	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2400|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3206|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||2939|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10980G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5398G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5579G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2810G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5579G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5579G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5579G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5579G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5579G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2810G>C||||||
1	725462	.	C	G	1867.55	.	AC=88;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2410|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3216|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||2949|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+10990C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5388C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5589C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2800C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5589C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5589C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5589C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5589C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5589C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2800C>G||||||
1	725472	.	G	C	942.24	.	AC=46;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2420|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3226|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||2959|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11000G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5378G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5599G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2790G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5599G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5599G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5599G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5599G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5599G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2790G>C||||||
1	725479	.	A	T	47.9	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||2427|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||3233|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||2966|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11007A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5371A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5606A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2783A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5606A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5606A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5606A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5606A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5606A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2783A>T||||||
1	725480	.	T	C	84.92	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||2428|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||3234|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||2967|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11008T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5370T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5607T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2782T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5607T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5607T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5607T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5607T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5607T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2782T>C||||||
1	725501	.	G	A	12.39	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2449|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3255|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||2988|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11029G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5349G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5628G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2761G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5628G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5628G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5628G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5628G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5628G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2761G>A||||||
1	725504	.	T	A	1030.77	.	AC=50;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||2452|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||3258|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||2991|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11032T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5346T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5631T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2758T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5631T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5631T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5631T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5631T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5631T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2758T>A||||||
1	725506	.	T	G	2066.49	.	AC=58;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||2454|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||3260|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||2993|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11034T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5344T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5633T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2756T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5633T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5633T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5633T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5633T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5633T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2756T>G||||||
1	725507	.	G	C	170.83	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2455|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3261|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||2994|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11035G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5343G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5634G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2755G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5634G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5634G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5634G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5634G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5634G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2755G>C||||||
1	725516	rs6696240	A	G	9825.88	.	AC=140;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2464|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3270|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3003|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11044A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5334A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5643A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2746A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5643A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5643A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5643A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5643A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5643A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2746A>G||||||
1	725536	.	G	A	594.32	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2484|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3290|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3023|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11064G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5314G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5663G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2726G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5663G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5663G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5663G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5663G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5663G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2726G>A||||||
1	725555	.	T	C	1775.89	.	AC=37;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||2503|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||3309|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3042|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11083T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5295T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5682T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2707T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5682T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5682T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5682T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5682T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5682T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2707T>C||||||
1	725556	.	A	G	20771.49	.	AC=247;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2504|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3310|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3043|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11084A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5294A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5683A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2706A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5683A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5683A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5683A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5683A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5683A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2706A>G||||||
1	725559	.	C	A	364.83	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2507|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3313|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3046|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11087C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5291C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5686C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2703C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5686C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5686C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5686C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5686C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5686C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2703C>A||||||
1	725561	.	C	G	303.31	.	AC=27;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2509|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3315|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||3048|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11089C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5289C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2701C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2701C>G||||||
1	725565	.	A	T	525.55	.	AC=36;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||2513|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||3319|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||3052|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11093A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5285A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5692A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2697A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5692A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5692A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5692A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5692A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5692A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2697A>T||||||
1	725569	.	T	A	17271.25	.	AC=191;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||2517|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||3323|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||3056|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11097T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5281T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5696T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2693T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5696T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5696T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5696T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5696T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5696T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2693T>A||||||
1	725586	.	C	T	1796.73	.	AC=44;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2534|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3340|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3073|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11114C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5264C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5713C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2676C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5713C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5713C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5713C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5713C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5713C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2676C>T||||||
1	725591	.	G	A	3027.79	.	AC=123;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2539|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3345|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3078|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11119G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5259G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5718G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2671G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5718G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5718G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5718G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5718G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5718G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2671G>A||||||
1	725601	.	G	C	15380.35	.	AC=221;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2549|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3355|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3088|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11129G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5249G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5728G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2661G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5728G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5728G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5728G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5728G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5728G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2661G>C||||||
1	725610	.	T	G	2434.72	.	AC=111;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||2558|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||3364|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||3097|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11138T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5240T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5737T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2652T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5737T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5737T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5737T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5737T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5737T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2652T>G||||||
1	725615	.	C	T	526.83	.	AC=34;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2563|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3369|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3102|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11143C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5235C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5742C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2647C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5742C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5742C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5742C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5742C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5742C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2647C>T||||||
1	725630	.	T	A	2603.53	.	AC=146;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||2578|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||3384|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||3117|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11158T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5220T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5757T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2632T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5757T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5757T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5757T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5757T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5757T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2632T>A||||||
1	725640	.	T	C	1506.9	.	AC=83;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||2588|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||3394|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3127|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11168T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5210T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5767T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2622T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5767T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5767T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5767T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5767T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5767T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2622T>C||||||
1	725654	.	A	G	160.9	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2602|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3408|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3141|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11182A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5196A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5781A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2608A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5781A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5781A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5781A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5781A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5781A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2608A>G||||||
1	725667	.	G	T	32.24	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2615|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3421|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3154|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11195G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5183G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5794G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2595G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5794G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5794G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5794G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5794G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5794G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2595G>T||||||
1	725672	.	T	A	91.93	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||2620|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||3426|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||3159|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11200T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5178T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5799T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2590T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5799T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5799T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5799T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5799T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5799T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2590T>A||||||
1	725684	.	C	A	436.49	.	AC=46;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2632|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3438|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3171|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11212C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5166C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5811C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2578C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5811C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5811C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5811C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5811C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5811C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2578C>A||||||
1	725699	.	A	G	414.87	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2647|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3453|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3186|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11227A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5151A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5826A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2563A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5826A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5826A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5826A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5826A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5826A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2563A>G||||||
1	725705	.	G	A	503.67	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2653|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3459|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3192|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11233G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5145G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5832G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2557G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5832G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5832G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5832G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5832G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5832G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2557G>A||||||
1	725764	.	C	A	121.22	.	AC=16;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2712|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3518|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3251|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11292C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5086C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5891C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2498C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5891C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5891C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5891C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5891C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5891C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2498C>A||||||
1	725776	.	A	G	229.49	.	AC=28;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2724|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3530|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3263|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11304A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5074A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5903A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2486A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5903A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5903A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5903A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5903A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5903A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2486A>G||||||
1	725784	.	A	T	1497.62	.	AC=94;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||2732|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||3538|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||3271|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11312A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5066A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5911A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2478A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5911A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5911A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5911A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5911A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5911A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2478A>T||||||
1	725785	.	G	T	187.09	.	AC=22;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2733|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3539|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3272|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11313G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5065G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5912G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2477G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5912G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5912G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5912G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5912G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5912G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2477G>T||||||
1	725792	.	G	T	1626.45	.	AC=95;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2740|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3546|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3279|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11320G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5058G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5919G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2470G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5919G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5919G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5919G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5919G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5919G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2470G>T||||||
1	725797	.	G	C	89.99	.	AC=17;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2745|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3551|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3284|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11325G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5053G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5924G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2465G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5924G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5924G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5924G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5924G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5924G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2465G>C||||||
1	725801	.	G	A	8.61	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2749|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3555|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3288|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11329G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5049G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5928G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2461G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5928G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5928G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5928G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5928G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5928G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2461G>A||||||
1	725807	.	C	G	2169.64	.	AC=103;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2755|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3561|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||3294|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11335C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5043C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5934C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2455C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5934C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5934C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5934C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5934C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5934C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2455C>G||||||
1	725810	.	T	G	1753.24	.	AC=90;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||2758|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||3564|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||3297|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11338T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5040T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5937T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2452T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5937T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5937T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5937T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5937T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5937T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2452T>G||||||
1	725811	.	G	A	203.94	.	AC=22;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2759|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3565|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3298|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5039G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2451G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2451G>A||||||
1	725819	.	C	A	1345.92	.	AC=67;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2767|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3573|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3306|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11347C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5031C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5946C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2443C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5946C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5946C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5946C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5946C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5946C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2443C>A||||||
1	725821	.	C	G	94.25	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2769|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3575|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||3308|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11349C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5029C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5948C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2441C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5948C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5948C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5948C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5948C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5948C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2441C>G||||||
1	725822	.	G	A	8497.72	.	AC=147;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2770|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3576|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3309|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11350G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5028G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5949G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2440G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5949G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5949G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5949G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5949G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5949G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2440G>A||||||
1	725825	.	T	C	15.29	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||2773|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||3579|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3312|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11353T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5025T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2437T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2437T>C||||||
1	725848	.	G	A	370.29	.	AC=48;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2796|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3602|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3335|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11376G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-5002G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+5975G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2414G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+5975G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+5975G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+5975G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+5975G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+5975G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2414G>A||||||
1	725891	.	A	G	84.54	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2839|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3645|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3378|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11419A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4959A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6018A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2371A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6018A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6018A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6018A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6018A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6018A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2371A>G||||||
1	725895	.	T	G	1167.38	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||2843|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||3649|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||3382|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11423T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4955T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6022T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2367T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6022T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6022T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6022T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6022T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6022T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2367T>G||||||
1	725903	.	T	A	12328.76	.	AC=163;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||2851|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||3657|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||3390|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11431T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4947T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6030T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2359T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6030T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6030T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6030T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6030T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6030T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2359T>A||||||
1	725904	.	C	A	356.78	.	AC=43;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2852|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3658|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3391|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11432C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4946C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6031C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2358C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6031C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6031C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6031C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6031C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6031C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2358C>A||||||
1	725914	.	A	C	422.09	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>C|||||2862|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||3668|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||3401|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11442A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4936A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6041A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2348A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6041A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6041A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6041A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6041A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6041A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2348A>C||||||
1	725926	.	G	T	14073.37	.	AC=65;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2874|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3680|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3413|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11454G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4924G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6053G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2336G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6053G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6053G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6053G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6053G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6053G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2336G>T||||||
1	725929	.	C	A	102.75	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2877|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3683|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3416|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11457C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4921C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6056C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2333C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6056C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6056C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6056C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6056C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6056C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2333C>A||||||
1	725931	.	C	T	5.73	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2879|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3685|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3418|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11459C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4919C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6058C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2331C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6058C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6058C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6058C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6058C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6058C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2331C>T||||||
1	725932	.	G	A	238.73	.	AC=27;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2880|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3686|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3419|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11460G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4918G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6059G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2330G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6059G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6059G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6059G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6059G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6059G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2330G>A||||||
1	725941	.	G	T	55.39	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2889|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3695|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3428|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11469G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4909G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6068G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2321G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6068G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6068G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6068G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6068G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6068G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2321G>T||||||
1	725942	.	G	T	635.11	.	AC=37;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||2890|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3696|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3429|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11470G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4908G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6069G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2320G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6069G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6069G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6069G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6069G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6069G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2320G>T||||||
1	725943	.	A	T	34.62	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||2891|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||3697|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||3430|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11471A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4907A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2319A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6070A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2319A>T||||||
1	725944	.	C	A	33985.43	.	AC=282;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2892|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3698|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3431|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11472C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4906C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6071C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2318C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6071C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6071C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6071C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6071C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6071C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2318C>A||||||
1	725946	.	G	C	225.39	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2894|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3700|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3433|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11474G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4904G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6073G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2316G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6073G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6073G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6073G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6073G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6073G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2316G>C||||||
1	725947	.	C	G	473.98	.	AC=46;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||2895|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3701|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||3434|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11475C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4903C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6074C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2315C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6074C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6074C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6074C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6074C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6074C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2315C>G||||||
1	725951	.	G	C	720.48	.	AC=27;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||2899|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3705|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3438|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11479G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4899G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6078G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2311G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6078G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6078G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6078G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6078G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6078G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2311G>C||||||
1	725955	.	T	C	2908.83	.	AC=68;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||2903|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||3709|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3442|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11483T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4895T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6082T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2307T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6082T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6082T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6082T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6082T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6082T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2307T>C||||||
1	725962	.	A	G	15005.96	.	AC=112;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||2910|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3716|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3449|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11490A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6089A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2300A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6089A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6089A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6089A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6089A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6089A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2300A>G||||||
1	725974	.	A	C	70.82	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>C|||||2922|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||3728|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||3461|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11502A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4876A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6101A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2288A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6101A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6101A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6101A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6101A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6101A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2288A>C||||||
1	725976	.	G	A	473.11	.	AC=33;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2924|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3730|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3463|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11504G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4874G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6103G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2286G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6103G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6103G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6103G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6103G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6103G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2286G>A||||||
1	725980	.	C	T	15140.08	.	AC=238;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||2928|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3734|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3467|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11508C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4870C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2282C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6107C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2282C>T||||||
1	726001	.	G	A	17.18	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2949|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3755|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3488|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11529G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4849G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2261G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2261G>A||||||
1	726010	.	C	A	9.18	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2958|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3764|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3497|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11538C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4840C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6137C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2252C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6137C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6137C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6137C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6137C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6137C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2252C>A||||||
1	726021	.	G	A	10.31	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||2969|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3775|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3508|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11549G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4829G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2241G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2241G>A||||||
1	726029	.	C	A	791.54	.	AC=58;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||2977|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3783|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3516|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11557C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4821C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6156C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2233C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6156C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6156C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6156C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6156C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6156C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2233C>A||||||
1	726057	.	G	T	14417.97	.	AC=172;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3005|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3811|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3544|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11585G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4793G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6184G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2205G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6184G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6184G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6184G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6184G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6184G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2205G>T||||||
1	726060	.	T	C	2055.76	.	AC=27;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3008|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||3814|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3547|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11588T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4790T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6187T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2202T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6187T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6187T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6187T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6187T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6187T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2202T>C||||||
1	726064	.	A	G	1220.72	.	AC=93;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3012|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||3818|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3551|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11592A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4786A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6191A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2198A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6191A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6191A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6191A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6191A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6191A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2198A>G||||||
1	726076	.	G	T	375.99	.	AC=29;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3024|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3830|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3563|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11604G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4774G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6203G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2186G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6203G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6203G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6203G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6203G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6203G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2186G>T||||||
1	726079	.	C	A	61.19	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3027|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||3833|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3566|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11607C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4771C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2183C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2183C>A||||||
1	726080	.	T	A	1204.3	.	AC=85;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||3028|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||3834|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||3567|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11608T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4770T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6207T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2182T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6207T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6207T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6207T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6207T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6207T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2182T>A||||||
1	726082	.	G	C	2551.24	.	AC=146;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3030|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3836|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3569|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11610G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4768G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6209G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2180G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6209G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6209G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6209G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6209G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6209G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2180G>C||||||
1	726097	.	G	C	814.99	.	AC=59;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3045|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3851|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3584|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11625G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4753G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6224G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2165G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6224G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6224G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6224G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6224G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6224G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2165G>C||||||
1	726107	rs6699876	T	G	15114.33	.	AC=186;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||3055|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||3861|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||3594|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11635T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4743T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6234T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2155T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6234T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6234T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6234T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6234T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6234T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2155T>G||||||
1	726113	rs6692093	C	G	15493.28	.	AC=184;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3061|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3867|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||3600|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11641C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4737C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6240C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2149C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6240C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6240C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6240C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6240C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6240C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2149C>G||||||
1	726122	.	G	T	43.48	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3070|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3876|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3609|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11650G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4728G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6249G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2140G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6249G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6249G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6249G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6249G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6249G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2140G>T||||||
1	726127	.	G	C	18.35	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3075|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||3881|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3614|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11655G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4723G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6254G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2135G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6254G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6254G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6254G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6254G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6254G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2135G>C||||||
1	726145	.	C	T	146.86	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||3093|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||3899|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3632|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11673C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4705C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6272C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2117C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6272C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6272C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6272C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6272C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6272C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2117C>T||||||
1	726147	.	C	G	268.11	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3095|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||3901|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||3634|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11675C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4703C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6274C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2115C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6274C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6274C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6274C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6274C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6274C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2115C>G||||||
1	726172	.	G	T	561.43	.	AC=49;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3120|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3926|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3659|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11700G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4678G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6299G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2090G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6299G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6299G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6299G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6299G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6299G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2090G>T||||||
1	726185	.	T	A	35703.27	.	AC=376;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||3133|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||3939|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||3672|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11713T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4665T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6312T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2077T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6312T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6312T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6312T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6312T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6312T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2077T>A||||||
1	726227	.	G	A	689.79	.	AC=63;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3175|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3981|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3714|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11755G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4623G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6354G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2035G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6354G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6354G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6354G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6354G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6354G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2035G>A||||||
1	726232	.	G	A	87.87	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3180|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||3986|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3719|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11760G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4618G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6359G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2030G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6359G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6359G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6359G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6359G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6359G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2030G>A||||||
1	726235	.	G	T	24619.69	.	AC=334;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3183|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3989|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3722|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11763G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4615G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6362G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2027G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6362G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6362G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6362G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6362G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6362G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2027G>T||||||
1	726238	.	G	T	236.83	.	AC=27;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3186|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||3992|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3725|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11766G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4612G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6365G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2024G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6365G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6365G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6365G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6365G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6365G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2024G>T||||||
1	726248	.	A	G	19732.25	.	AC=287;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3196|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4002|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3735|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11776A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4602A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6375A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-2014A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6375A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6375A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6375A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6375A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6375A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-2014A>G||||||
1	726264	.	C	A	218.16	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3212|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||4018|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3751|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11792C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4586C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6391C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1998C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6391C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6391C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6391C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6391C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6391C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1998C>A||||||
1	726272	.	G	T	100.08	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3220|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||4026|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||3759|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11800G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4578G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6399G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1990G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6399G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6399G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6399G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6399G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6399G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1990G>T||||||
1	726275	.	C	A	573.87	.	AC=56;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3223|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||4029|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||3762|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11803C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4575C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6402C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1987C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6402C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6402C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6402C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6402C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6402C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1987C>A||||||
1	726277	.	C	G	446.16	.	AC=51;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3225|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||4031|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||3764|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11805C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4573C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6404C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1985C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6404C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6404C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6404C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6404C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6404C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1985C>G||||||
1	726278	.	G	A	265.02	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3226|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4032|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3765|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11806G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4572G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6405G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1984G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6405G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6405G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6405G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6405G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6405G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1984G>A||||||
1	726282	.	G	A	68.37	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3230|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4036|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3769|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11810G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4568G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6409G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1980G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6409G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6409G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6409G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6409G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6409G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1980G>A||||||
1	726287	.	A	G	65.76	.	AC=16;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3235|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4041|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3774|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11815A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4563A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6414A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1975A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6414A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6414A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6414A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6414A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6414A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1975A>G||||||
1	726294	.	T	C	11893.83	.	AC=127;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3242|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4048|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3781|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11822T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4556T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6421T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1968T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6421T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6421T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6421T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6421T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6421T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1968T>C||||||
1	726308	.	G	C	19.14	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3256|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4062|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3795|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11836G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4542G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6435G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1954G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6435G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6435G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6435G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6435G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6435G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1954G>C||||||
1	726311	.	C	T	17.71	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||3259|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||4065|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3798|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11839C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4539C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6438C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1951C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6438C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6438C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6438C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6438C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6438C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1951C>T||||||
1	726312	.	C	T	161.06	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||3260|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||4066|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3799|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11840C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4538C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6439C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1950C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6439C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6439C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6439C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6439C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6439C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1950C>T||||||
1	726313	.	C	T	95.47	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||3261|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>T|||||4067|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>T|||||3800|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11841C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4537C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6440C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1949C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6440C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6440C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6440C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6440C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6440C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1949C>T||||||
1	726316	.	A	G	16713.38	.	AC=152;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3264|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4070|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3803|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11844A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4534A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6443A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1946A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6443A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6443A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6443A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6443A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6443A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1946A>G||||||
1	726318	.	G	A	16937.59	.	AC=214;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3266|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4072|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||3805|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11846G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4532G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6445G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1944G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6445G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6445G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6445G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6445G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6445G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1944G>A||||||
1	726331	.	A	T	555.94	.	AC=42;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||3279|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||4085|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||3818|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11859A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4519A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6458A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1931A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6458A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6458A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6458A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6458A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6458A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1931A>T||||||
1	726341	.	A	G	30.78	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3289|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4095|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3828|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11869A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4509A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6468A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1921A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6468A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6468A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6468A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6468A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6468A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1921A>G||||||
1	726342	.	T	C	356.3	.	AC=41;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3290|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4096|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3829|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11870T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4508T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6469T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1920T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6469T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6469T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6469T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6469T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6469T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1920T>C||||||
1	726368	.	G	C	733.78	.	AC=51;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3316|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4122|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||3855|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11896G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4482G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6495G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1894G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6495G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6495G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6495G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6495G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6495G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1894G>C||||||
1	726383	.	A	G	207.97	.	AC=31;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3331|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4137|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3870|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11911A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4467A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6510A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1879A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6510A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6510A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6510A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6510A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6510A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1879A>G||||||
1	726397	.	T	A	170.13	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||3345|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||4151|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||3884|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11925T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4453T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6524T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1865T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6524T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6524T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6524T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6524T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6524T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1865T>A||||||
1	726403	.	A	G	459.2	.	AC=46;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3351|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4157|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||3890|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11931A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4447A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6530A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1859A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6530A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6530A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6530A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6530A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6530A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1859A>G||||||
1	726449	.	T	C	2500.6	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3397|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4203|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||3936|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+11977T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4401T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6576T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1813T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6576T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6576T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6576T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6576T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6576T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1813T>C||||||
1	726481	rs3131980	T	G	84769.28	.	AC=919;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||3429|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||4235|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||3968|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12009T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4369T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6608T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1781T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6608T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6608T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6608T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6608T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6608T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1781T>G||||||
1	726498	.	A	T	86.16	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||3446|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||4252|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||3985|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12026A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4352A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6625A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1764A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6625A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6625A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6625A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6625A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6625A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1764A>T||||||
1	726519	.	T	C	90.6	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3467|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4273|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||4006|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12047T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4331T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6646T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1743T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6646T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6646T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6646T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6646T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6646T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1743T>C||||||
1	726561	.	C	G	1606.68	.	AC=90;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3509|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||4315|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||4048|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12089C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4289C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1701C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6688C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1701C>G||||||
1	726566	.	T	G	1100.7	.	AC=68;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||3514|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||4320|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||4053|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12094T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4284T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6693T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1696T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6693T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6693T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6693T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6693T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6693T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1696T>G||||||
1	726585	.	C	G	15312.61	.	AC=145;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3533|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||4339|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||4072|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12113C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4265C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6712C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1677C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6712C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6712C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6712C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6712C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6712C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1677C>G||||||
1	726586	.	G	A	925.06	.	AC=41;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3534|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4340|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4073|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12114G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4264G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6713G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1676G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6713G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6713G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6713G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6713G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6713G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1676G>A||||||
1	726611	.	G	C	121.0	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3559|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4365|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4098|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12139G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4239G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6738G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1651G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6738G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6738G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6738G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6738G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6738G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1651G>C||||||
1	726613	.	A	C	15.59	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>C|||||3561|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||4367|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||4100|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12141A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4237A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6740A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1649A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6740A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6740A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6740A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6740A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6740A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1649A>C||||||
1	726626	.	G	A	45.35	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3574|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4380|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4113|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12154G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4224G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6753G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1636G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6753G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6753G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6753G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6753G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6753G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1636G>A||||||
1	726653	.	C	A	59.18	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3601|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||4407|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||4140|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12181C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4197C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6780C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1609C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6780C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6780C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6780C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6780C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6780C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1609C>A||||||
1	726685	rs28666865	T	C	955.03	.	AC=44;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3633|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4439|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||4172|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12213T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4165T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6812T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1577T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6812T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6812T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6812T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6812T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6812T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1577T>C||||||
1	726707	.	C	A	169.84	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3655|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||4461|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||4194|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12235C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4143C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6834C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1555C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6834C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6834C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6834C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6834C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6834C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1555C>A||||||
1	726709	.	C	G	68.47	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3657|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||4463|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||4196|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12237C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4141C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6836C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1553C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6836C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6836C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6836C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6836C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6836C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1553C>G||||||
1	726719	.	G	C	77.92	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3667|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4473|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4206|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12247G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4131G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6846G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1543G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6846G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6846G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6846G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6846G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6846G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1543G>C||||||
1	726724	.	G	C	389.66	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3672|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4478|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4211|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12252G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4126G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6851G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1538G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6851G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6851G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6851G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6851G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6851G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1538G>C||||||
1	726754	.	G	A	1605.13	.	AC=42;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3702|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4508|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4241|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12282G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4096G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6881G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1508G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6881G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6881G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6881G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6881G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6881G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1508G>A||||||
1	726770	rs28715113	G	A	2250.59	.	AC=47;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3718|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4524|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4257|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12298G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4080G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6897G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1492G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6897G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6897G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6897G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6897G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6897G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1492G>A||||||
1	726778	.	A	T	1335.7	.	AC=95;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||3726|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||4532|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||4265|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12306A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4072A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6905A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1484A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6905A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6905A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6905A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6905A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6905A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1484A>T||||||
1	726794	rs28454925	C	G	1945.92	.	AC=39;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3742|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||4548|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||4281|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12322C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4056C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6921C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1468C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6921C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6921C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6921C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6921C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6921C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1468C>G||||||
1	726795	.	G	A	59.29	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3743|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4549|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4282|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12323G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4055G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6922G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1467G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6922G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6922G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6922G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6922G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6922G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1467G>A||||||
1	726797	.	T	C	102.75	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3745|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4551|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||4284|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12325T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4053T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6924T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1465T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6924T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6924T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6924T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6924T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6924T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1465T>C||||||
1	726802	.	A	G	446.9	.	AC=16;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3750|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4556|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||4289|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12330A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4048A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6929A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1460A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6929A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6929A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6929A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6929A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6929A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1460A>G||||||
1	726820	.	A	G	186.96	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3768|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4574|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||4307|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12348A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4030A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6947A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1442A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6947A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6947A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6947A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6947A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6947A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1442A>G||||||
1	726830	.	T	G	585.48	.	AC=52;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||3778|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||4584|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||4317|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12358T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4020T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6957T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1432T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6957T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6957T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6957T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6957T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6957T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1432T>G||||||
1	726835	.	G	T	411.64	.	AC=34;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||3783|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>T|||||4589|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>T|||||4322|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12363G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4015G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6962G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1427G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6962G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6962G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6962G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6962G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6962G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1427G>T||||||
1	726848	.	T	C	7.53	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3796|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4602|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||4335|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12376T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-4002T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6975T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1414T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6975T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6975T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6975T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6975T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6975T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1414T>C||||||
1	726859	.	A	G	11318.14	.	AC=155;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3807|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4613|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||4346|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.37+12387A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3991A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+6986A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1403A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+6986A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+6986A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+6986A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+6986A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+6986A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1403A>G||||||
1	726897	.	A	T	819.11	.	AC=49;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||3845|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||4651|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||4384|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12402A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3953A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7024A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1365A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7024A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7024A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7024A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7024A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7024A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1365A>T||||||
1	726922	rs113477110	C	A	27770.07	.	AC=244;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3870|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||4676|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||4409|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12377C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3928C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7049C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1340C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7049C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7049C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7049C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7049C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7049C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1340C>A||||||
1	726927	.	A	G	132.87	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3875|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4681|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||4414|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12372A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3923A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7054A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1335A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7054A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7054A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7054A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7054A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7054A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1335A>G||||||
1	726928	.	T	A	24851.17	.	AC=207;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||3876|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>A|||||4682|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>A|||||4415|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12371T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3922T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7055T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1334T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7055T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7055T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7055T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7055T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7055T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1334T>A||||||
1	726930	.	G	C	38.76	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3878|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4684|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4417|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12369G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3920G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7057G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1332G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7057G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7057G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7057G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7057G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7057G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1332G>C||||||
1	726939	rs4520358	G	C	27213.14	.	AC=282;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3887|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4693|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4426|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12360G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3911G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7066G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1323G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7066G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7066G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7066G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7066G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7066G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1323G>C||||||
1	726943	.	T	C	209.83	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||3891|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4697|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||4430|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12356T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3907T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7070T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1319T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7070T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7070T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7070T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7070T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7070T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1319T>C||||||
1	726944	rs3131979	C	G	63329.55	.	AC=441;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3892|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||4698|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||4431|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12355C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3906C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7071C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1318C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7071C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7071C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7071C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7071C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7071C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1318C>G||||||
1	726945	.	G	A	2607.7	.	AC=67;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3893|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4699|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4432|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12354G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3905G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7072G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1317G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7072G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7072G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7072G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7072G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7072G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1317G>A||||||
1	726957	rs12075980	A	C	27303.32	.	AC=279;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>C|||||3905|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||4711|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||4444|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12342A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3893A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7084A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1305A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7084A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7084A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7084A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7084A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7084A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1305A>C||||||
1	726959	.	G	C	2913.99	.	AC=95;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3907|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4713|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4446|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12340G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3891G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7086G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1303G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7086G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7086G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7086G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7086G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7086G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1303G>C||||||
1	726969	.	G	A	80.25	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3917|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4723|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4456|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12330G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3881G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7096G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1293G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7096G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7096G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7096G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7096G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7096G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1293G>A||||||
1	726977	.	A	C	404.3	.	AC=29;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>C|||||3925|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||4731|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||4464|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12322A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3873A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7104A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1285A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7104A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7104A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7104A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7104A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7104A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1285A>C||||||
1	726982	.	A	C	1268.48	.	AC=27;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>C|||||3930|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||4736|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||4469|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12317A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3868A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7109A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1280A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7109A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7109A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7109A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7109A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7109A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1280A>C||||||
1	726984	.	G	C	1272.98	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||3932|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4738|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4471|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12315G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3866G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7111G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1278G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7111G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7111G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7111G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7111G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7111G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1278G>C||||||
1	726987	.	A	C	636.22	.	AC=28;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>C|||||3935|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>C|||||4741|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>C|||||4474|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12312A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3863A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7114A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1275A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7114A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7114A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7114A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7114A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7114A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1275A>C||||||
1	726996	.	A	G	220.32	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3944|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4750|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||4483|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12303A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3854A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7123A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1266A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7123A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7123A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7123A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7123A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7123A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1266A>G||||||
1	727000	.	G	A	23737.63	.	AC=209;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3948|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4754|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4487|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12299G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3850G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7127G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1262G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7127G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7127G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7127G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7127G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7127G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1262G>A||||||
1	727002	rs75075910	C	A	1588.17	.	AC=83;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3950|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||4756|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||4489|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12297C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3848C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7129C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1260C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7129C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7129C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7129C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7129C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7129C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1260C>A||||||
1	727004	.	C	G	1427.35	.	AC=68;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>G|||||3952|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>G|||||4758|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>G|||||4491|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12295C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3846C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7131C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1258C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7131C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7131C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7131C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7131C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7131C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1258C>G||||||
1	727009	.	G	A	5.81	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||3957|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4763|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4496|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12290G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3841G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1253G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1253G>A||||||
1	727018	rs78317200	A	T	2237.6	.	AC=107;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||3966|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>T|||||4772|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||4505|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12281A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3832A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7145A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1244A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7145A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7145A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7145A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7145A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7145A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1244A>T||||||
1	727027	.	C	A	1836.53	.	AC=109;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||3975|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598C>A|||||4781|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194C>A|||||4514|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12272C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3823C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7154C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1235C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7154C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7154C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7154C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7154C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7154C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1235C>A||||||
1	727039	.	A	G	320.74	.	AC=34;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||3987|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598A>G|||||4793|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||4526|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12260A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3811A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7166A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1223A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7166A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7166A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7166A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7166A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7166A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1223A>G||||||
1	727045	.	T	G	442.34	.	AC=29;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>G|||||3993|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>G|||||4799|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>G|||||4532|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12254T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3805T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7172T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1217T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7172T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7172T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7172T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7172T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7172T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1217T>G||||||
1	727142	rs28641938	T	C	488.19	.	AC=25;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||4090|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4896|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||4629|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12157T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3708T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7269T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1120T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7269T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7269T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7269T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7269T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7269T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1120T>C||||||
1	727174	.	G	C	10.98	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>C|||||4122|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>C|||||4928|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>C|||||4661|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12125G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3676G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7301G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1088G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7301G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7301G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7301G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7301G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7301G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1088G>C||||||
1	727212	.	G	A	129.56	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||4160|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598G>A|||||4966|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4699|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12087G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3638G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1050G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1050G>A||||||
1	727244	.	T	C	95.09	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||4192|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586928|lincRNA||n.*598T>C|||||4998|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194T>C|||||4731|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12055T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3606T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7371T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1018T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7371T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7371T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7371T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7371T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7371T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1018T>C||||||
1	727256	.	A	T	10.47	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>T|||||4204|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>T|||||4743|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-12043A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3594A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7383A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-1006A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7383A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7383A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7383A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7383A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7383A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-1006A>T||||||
1	727361	.	G	A	44.07	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||4309|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194G>A|||||4848|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11938G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3489G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7488G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-901G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7488G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7488G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7488G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7488G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7488G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-901G>A||||||
1	727377	.	A	G	191.57	.	AC=21;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||4325|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000358533|lincRNA||n.*1194A>G|||||4864|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11922A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3473A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7504A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-885A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7504A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7504A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7504A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7504A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7504A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-885A>G||||||
1	727516	.	C	T	420.56	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||4464|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11783C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3334C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-746C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-746C>T||||||
1	727590	.	C	A	214.5	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||4538|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11709C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3260C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7717C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-672C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7717C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7717C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7717C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7717C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7717C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-672C>A||||||
1	727628	.	T	C	328.02	.	AC=32;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||4576|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11671T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3222T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-634T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-634T>C||||||
1	727655	rs12565110	C	T	1653.98	.	AC=66;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||4603|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11644C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3195C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7782C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-607C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7782C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7782C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7782C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7782C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7782C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-607C>T||||||
1	727674	.	C	A	221.52	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||4622|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11625C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3176C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7801C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-588C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7801C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7801C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7801C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7801C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7801C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-588C>A||||||
1	727699	.	G	A	275.18	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||4647|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11600G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3151G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7826G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-563G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7826G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7826G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7826G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7826G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7826G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-563G>A||||||
1	727815	rs77874774	T	C	173.76	.	AC=28;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||4763|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11484T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3035T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7942T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-447T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7942T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7942T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7942T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7942T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7942T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-447T>C||||||
1	727841	rs116587930	G	A	1953.46	.	AC=45;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>A|||||4789|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11458G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3009G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7968G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-421G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7968G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7968G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7968G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7968G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7968G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-421G>A||||||
1	727844	.	G	T	239.95	.	AC=24;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873G>T|||||4792|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11455G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-3006G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7971G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-418G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7971G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7971G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7971G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7971G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7971G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-418G>T||||||
1	727853	rs74436512	C	T	1783.25	.	AC=110;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>T|||||4801|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11446C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2997C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+7980C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-409C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+7980C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+7980C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+7980C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+7980C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+7980C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-409C>T||||||
1	727913	rs76984760	A	G	19145.6	.	AC=291;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873A>G|||||4861|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11386A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2937A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8040A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-349A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8040A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8040A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8040A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8040A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8040A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-349A>G||||||
1	727962	rs74514030	T	C	12345.42	.	AC=208;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||4910|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11337T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2888T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8089T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-300T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8089T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8089T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8089T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8089T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8089T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-300T>C||||||
1	727974	.	C	A	212.13	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873C>A|||||4922|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11325C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2876C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8101C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-288C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8101C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8101C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8101C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8101C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8101C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-288C>A||||||
1	728011	.	T	A	8.71	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>A|||||4959|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11288T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2839T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8138T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-251T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8138T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8138T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8138T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8138T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8138T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-251T>A||||||
1	728013	.	T	C	69.32	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591702|lincRNA||n.*1873T>C|||||4961|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11286T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2837T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8140T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-249T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8140T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8140T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8140T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8140T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8140T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-249T>C||||||
1	728094	.	T	C	1010.62	.	AC=42;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11205T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2756T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8221T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-168T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8221T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8221T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8221T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8221T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8221T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-168T>C||||||
1	728159	rs3131978	C	T	25742.32	.	AC=614;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11140C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2691C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8286C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-103C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8286C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8286C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8286C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8286C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8286C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-103C>T||||||
1	728242	rs3131977	C	G	22680.87	.	AC=633;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11057C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2608C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8369C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-20C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8369C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8369C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8369C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8369C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8369C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-20C>G||||||
1	728259	.	T	C	18.58	.	AC=5;ANN=C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|1/4|n.125-3T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|1/6|n.99-3T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-11040T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2591T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.124+8386T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8386T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8386T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8386T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8386T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8386T>C||||||
1	728455	.	G	C	47.89	.	AC=5;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10844G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2395G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8532G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+34G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8582G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8582G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8582G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8582G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8582G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+34G>C||||||
1	728511	.	G	A	350.7	.	AC=15;ANN=A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10788G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2339G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8476G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+90G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8638G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8638G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8638G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8638G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8638G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+90G>A||||||
1	728516	.	C	T	28.46	.	AC=6;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10783C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2334C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8471C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+95C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8643C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+95C>T||||||
1	728605	.	C	A	2051.71	.	AC=98;ANN=A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10694C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2245C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8382C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+184C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8732C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8732C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8732C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8732C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8732C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+184C>A||||||
1	728606	.	G	A	565.38	.	AC=7;ANN=A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10693G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2244G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8381G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+185G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+185G>A||||||
1	728647	.	C	T	353.85	.	AC=12;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10652C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2203C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8340C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+226C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8774C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8774C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8774C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8774C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8774C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+226C>T||||||
1	728681	.	A	G	307.28	.	AC=16;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10618A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-2169A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8306A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+260A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8808A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8808A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8808A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8808A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8808A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+260A>G||||||
1	728853	.	A	G	23.41	.	AC=1;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10446A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1997A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8134A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+432A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+8980A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+8980A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+8980A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+8980A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+8980A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+432A>G||||||
1	728951	rs55744711	C	T	3192.81	.	AC=59;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10348C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1899C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-8036C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+530C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+9078C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9078C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9078C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9078C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9078C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+530C>T||||||
1	729151	.	C	T	123.46	.	AC=12;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10148C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1699C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7836C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+730C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+9278C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9278C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9278C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9278C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9278C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+730C>T||||||
1	729152	.	G	A	29.26	.	AC=5;ANN=A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10147G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1698G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7835G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+731G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+9279G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9279G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9279G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9279G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9279G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+731G>A||||||
1	729290	.	C	T	25.08	.	AC=5;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-10009C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1560C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7697C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+869C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.124+9417C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9417C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9417C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9417C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9417C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+869C>T||||||
1	729446	.	G	C	196.28	.	AC=18;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9853G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1404G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7541G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+1025G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9501G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9573G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9573G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9573G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9573G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+1025G>C||||||
1	729452	.	C	T	78.17	.	AC=8;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9847C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1398C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7535C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+1031C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9495C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9579C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9579C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9579C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9579C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+1031C>T||||||
1	729467	.	T	C	84.45	.	AC=13;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9832T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1383T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7520T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+1046T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9480T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9594T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9594T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9594T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9594T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+1046T>C||||||
1	729481	.	G	C	94.17	.	AC=13;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9818G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1369G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7506G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+1060G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9466G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9608G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9608G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9608G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9608G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+1060G>C||||||
1	729525	.	G	C	77.25	.	AC=11;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9774G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1325G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7462G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+1104G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9422G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.124+9652G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.124+9652G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.124+9652G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.124+9652G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+1104G>C||||||
1	729632	rs116720794	C	T	1468.22	.	AC=41;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9667C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1218C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7355C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.284+1211C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9315C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9667C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9667C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9670C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9667C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.258+1211C>T||||||
1	729679	rs4951859	C	G	31884.54	.	AC=682;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9620C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1171C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7308C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-1171C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9268C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9620C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9620C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9623C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9620C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-1171C>G||||||
1	729739	.	C	T	150.38	.	AC=4;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9560C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-1111C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7248C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-1111C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9208C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9560C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9560C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9563C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9560C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-1111C>T||||||
1	729929	.	G	A	51.35	.	AC=12;ANN=A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9370G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-921G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7058G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-921G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9018G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9370G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9370G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9373G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9370G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-921G>A||||||
1	729940	.	C	G	1459.65	.	AC=34;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9359C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-910C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7047C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-910C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-9007C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9359C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9359C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9362C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9359C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-910C>G||||||
1	729957	rs116982056	T	C	897.54	.	AC=20;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9342T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-893T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7030T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-893T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8990T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9342T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9342T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9345T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9342T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-893T>C||||||
1	729969	.	G	C	76.94	.	AC=13;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9330G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-881G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-7018G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-881G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8978G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9330G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9330G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9333G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9330G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-881G>C||||||
1	730087	.	T	C	809.99	.	AC=30;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9212T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-763T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6900T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-763T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8860T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9212T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9212T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9215T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9212T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-763T>C||||||
1	730094	.	T	G	13.78	.	AC=1;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9205T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-756T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6893T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-756T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8853T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9205T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9205T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9208T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9205T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-756T>G||||||
1	730120	.	T	C	142.82	.	AC=12;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6867T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-730T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8827T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9182T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-730T>C||||||
1	730166	.	A	G	72.35	.	AC=1;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-684A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6821A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-684A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8781A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9136A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-684A>G||||||
1	730183	.	A	G	131.53	.	AC=5;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9116A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-667A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6804A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-667A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8764A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9116A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9116A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9119A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9116A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-667A>G||||||
1	730232	.	C	T	624.18	.	AC=14;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9067C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-618C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6755C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-618C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8715C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9067C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9067C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9070C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9067C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-618C>T||||||
1	730249	.	G	A	678.1	.	AC=13;ANN=A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-9050G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-601G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6738G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-601G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8698G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-9050G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-9050G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-9053G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-9050G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-601G>A||||||
1	730315	.	G	C	45.7	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8984G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-535G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6672G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-535G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8632G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8984G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8984G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8987G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8984G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-535G>C||||||
1	730323	.	A	G	477.57	.	AC=12;ANN=G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8976A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-527A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6664A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-527A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8624A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8976A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8976A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8979A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8976A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-527A>G||||||
1	730554	.	T	C	37.54	.	AC=8;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8745T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-296T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6433T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-296T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8393T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8745T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8745T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8748T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8745T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-296T>C||||||
1	730672	.	C	T	136.98	.	AC=17;ANN=T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8627C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-178C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6315C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-178C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8275C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8627C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8627C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8630C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8627C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-178C>T||||||
1	730804	.	G	A	16.51	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8495G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|1/1|n.125-46G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6183G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|2/4|n.285-46G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8143G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8495G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8495G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8498G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8495G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|2/6|n.259-46G>A||||||
1	730882	.	G	C	45.17	.	AC=2;ANN=C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6105G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8065G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8417G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8420G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8417G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA|2/2|n.157G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/5|n.317G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/7|n.291G>C||||||
1	730938	.	C	G	195.84	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||45|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8361C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-6049C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-8009C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8361C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8361C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8364C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8361C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/5|n.373C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/7|n.347C>G||||||
1	731048	.	C	T	588.78	.	AC=31;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||155|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8251C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5939C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+86C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7899C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8251C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8251C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8254C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8251C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+86C>T||||||
1	731062	.	C	T	84.06	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||169|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8237C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5925C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+100C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7885C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8237C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8237C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8240C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8237C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+100C>T||||||
1	731097	.	G	A	50.51	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||204|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8202G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5890G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+135G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7850G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8202G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8202G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8205G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8202G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+135G>A||||||
1	731181	.	G	A	229.22	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||288|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8118G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5806G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+219G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7766G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8118G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8118G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8121G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8118G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+219G>A||||||
1	731256	.	A	G	129.33	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||363|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8043A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5731A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+294A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7691A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8043A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8043A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8046A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8043A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+294A>G||||||
1	731265	.	G	A	149.02	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||4994|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||372|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||4994|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-8034G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5722G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+303G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7682G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-8034G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-8034G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-8037G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-8034G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+303G>A||||||
1	731372	.	G	T	106.59	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>A|||||4887|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>T|||||479|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>A|||||4887|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7927G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5615G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+410G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7575G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7927G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7927G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7930G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7927G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+410G>T||||||
1	731453	.	G	A	547.5	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||4806|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||560|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||4806|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7846G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5534G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+491G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7494G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7846G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7846G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7849G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7846G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+491G>A||||||
1	731499	.	T	C	507.01	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4760|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||606|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4760|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7800T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5488T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+537T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7448T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7800T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7800T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7803T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7800T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+537T>C||||||
1	731528	.	G	A	730.29	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||4731|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||635|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||4731|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7771G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5459G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+566G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7419G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7771G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7771G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7774G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7771G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+566G>A||||||
1	731537	.	C	T	151.68	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||4722|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||644|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||4722|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7762C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5450C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+575C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7410C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7762C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7762C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7765C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7762C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+575C>T||||||
1	731599	.	T	C	680.29	.	AC=22;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4660|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||706|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4660|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7700T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5388T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+637T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7348T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7700T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7700T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7703T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7700T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+637T>C||||||
1	731716	.	C	G	211.18	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>C|||||4543|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||823|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>C|||||4543|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7583C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5271C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+754C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7231C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7583C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7583C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7586C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7583C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+754C>G||||||
1	731717	.	A	G	179.71	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||4542|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||824|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||4542|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7582A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5270A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+755A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7230A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7582A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7582A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7585A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7582A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+755A>G||||||
1	731718	.	T	C	7088.26	.	AC=109;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4541|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||825|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4541|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7581T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5269T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+756T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7229T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7581T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7581T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7584T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7581T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+756T>C||||||
1	731784	.	C	T	40.54	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||4475|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||891|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||4475|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7515C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5203C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+822C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7163C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7515C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7515C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7518C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7515C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+822C>T||||||
1	731824	.	A	G	696.51	.	AC=38;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||4435|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||931|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||4435|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7475A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5163A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+862A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7123A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7475A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7475A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7478A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7475A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+862A>G||||||
1	731849	.	T	C	378.81	.	AC=28;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4410|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||956|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4410|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7450T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5138T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+887T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7098T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7450T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7450T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7453T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7450T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+887T>C||||||
1	731902	.	A	G	402.14	.	AC=28;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||4357|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||1009|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||4357|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7397A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5085A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+940A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-7045A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7397A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7397A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7400A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7397A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+940A>G||||||
1	731958	.	C	T	769.34	.	AC=40;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||4301|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||1065|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||4301|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7341C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5029C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+996C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6989C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7341C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7341C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7344C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7341C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+996C>T||||||
1	731965	.	T	C	435.81	.	AC=36;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4294|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1072|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4294|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7334T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-5022T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1003T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6982T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7334T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7334T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7337T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7334T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1003T>C||||||
1	731988	.	T	C	468.8	.	AC=35;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4271|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1095|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4271|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7311T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4999T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1026T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6959T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7311T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7311T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7314T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7311T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1026T>C||||||
1	732019	.	C	T	13.7	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||4240|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||1126|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||4240|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4968C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1057C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6928C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7283C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1057C>T||||||
1	732030	.	C	G	89.84	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>C|||||4229|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||1137|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>C|||||4229|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7269C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4957C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1068C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6917C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7269C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7269C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7272C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7269C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1068C>G||||||
1	732032	.	A	C	2480.6	.	AC=101;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>G|||||4227|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>C|||||1139|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>G|||||4227|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7267A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4955A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1070A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6915A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7267A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7267A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7270A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7267A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1070A>C||||||
1	732049	.	A	G	389.18	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||4210|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||1156|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||4210|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7250A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4938A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1087A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6898A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7250A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7250A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7253A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7250A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1087A>G||||||
1	732091	.	C	G	164.69	.	AC=24;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>C|||||4168|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||1198|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>C|||||4168|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7208C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4896C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1129C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6856C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7208C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7208C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7211C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7208C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1129C>G||||||
1	732120	rs114572157	T	C	855.56	.	AC=36;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4139|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1227|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4139|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4867T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1158T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6827T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7182T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7179T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1158T>C||||||
1	732147	.	C	T	200.63	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||4112|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||1254|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||4112|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7152C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4840C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1185C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6800C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7152C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7152C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7155C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7152C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1185C>T||||||
1	732155	.	T	C	50.54	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||4104|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1262|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||4104|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7144T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4832T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1193T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6792T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7144T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7144T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7147T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7144T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1193T>C||||||
1	732164	.	T	G	880.5	.	AC=44;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>C|||||4095|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>G|||||1271|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>C|||||4095|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7135T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4823T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1202T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6783T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7135T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7135T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7138T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7135T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1202T>G||||||
1	732212	.	T	A	18.32	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>T|||||4047|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>A|||||1319|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>T|||||4047|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7087T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4775T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1250T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6735T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7087T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7087T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7090T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7087T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1250T>A||||||
1	732215	.	C	T	708.95	.	AC=35;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||4044|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||1322|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||4044|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7084C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4772C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1253C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6732C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7084C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7084C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7087C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7084C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1253C>T||||||
1	732219	.	A	G	503.23	.	AC=37;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||4040|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||1326|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||4040|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7080A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4768A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1257A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6728A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7080A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7080A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7083A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7080A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1257A>G||||||
1	732276	.	C	G	571.5	.	AC=29;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>C|||||3983|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||1383|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>C|||||3983|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7023C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4711C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1314C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6671C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7023C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7023C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7026C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7023C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1314C>G||||||
1	732288	.	A	G	137.45	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||3971|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||1395|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||3971|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-7011A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4699A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1326A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6659A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-7011A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-7011A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7014A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-7011A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1326A>G||||||
1	732300	.	T	C	47.52	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||3959|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1407|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||3959|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6999T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4687T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1338T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6647T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6999T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6999T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-7002T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6999T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1338T>C||||||
1	732341	.	C	T	415.82	.	AC=30;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||3918|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||1448|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||3918|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6958C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4646C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1379C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6606C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6958C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6958C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6961C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6958C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1379C>T||||||
1	732446	.	T	C	168.52	.	AC=15;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||3813|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1553|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||3813|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6853T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4541T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1484T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6501T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6853T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6853T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6856T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6853T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1484T>C||||||
1	732486	.	A	G	81.63	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||3773|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||1593|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||3773|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6813A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4501A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1524A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6461A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6813A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6813A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6816A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6813A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1524A>G||||||
1	732543	.	G	T	87.87	.	AC=17;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>A|||||3716|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>T|||||1650|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>A|||||3716|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6756G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4444G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1581G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6404G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6756G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6756G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6759G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6756G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1581G>T||||||
1	732698	.	T	A	63.78	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>T|||||3561|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>A|||||1805|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>T|||||3561|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6601T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4289T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1736T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6249T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6601T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6601T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6604T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6601T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1736T>A||||||
1	732704	.	T	C	33.03	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||3555|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1811|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||3555|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6595T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4283T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1742T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6243T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6595T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6595T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6598T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6595T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1742T>C||||||
1	732707	rs2427940	G	A	28.76	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||3552|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||1814|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||3552|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6592G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4280G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1745G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6240G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6592G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6592G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6595G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6592G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1745G>A||||||
1	732720	.	T	G	116.67	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>C|||||3539|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>G|||||1827|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>C|||||3539|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6579T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4267T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1758T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6227T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6579T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6579T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6582T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6579T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1758T>G||||||
1	732746	.	T	C	507.46	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||3513|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1853|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||3513|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6553T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4241T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1784T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6201T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6553T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6553T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6556T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6553T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1784T>C||||||
1	732758	.	T	C	55.25	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||3501|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1865|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||3501|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6541T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4229T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1796T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6189T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6541T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6541T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6544T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6541T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1796T>C||||||
1	732772	.	G	A	82.35	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||3487|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||1879|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||3487|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6527G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4215G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1810G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6175G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6527G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6527G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6530G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6527G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1810G>A||||||
1	732801	.	A	G	1273.56	.	AC=49;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||3458|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||1908|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||3458|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6498A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4186A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1839A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6146A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6498A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6498A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6501A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6498A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1839A>G||||||
1	732809	rs12131618	T	C	1148.82	.	AC=54;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||3450|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||1916|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||3450|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1847T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6138T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6493T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1847T>C||||||
1	732814	.	A	G	45.53	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||3445|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||1921|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||3445|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6485A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4173A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1852A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6485A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6485A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6488A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6485A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1852A>G||||||
1	732882	.	C	G	71.15	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>C|||||3377|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||1989|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>C|||||3377|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6417C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4105C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1920C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6065C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6417C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6417C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6420C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6417C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1920C>G||||||
1	732935	.	G	C	52.92	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||3324|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>C|||||2042|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||3324|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6364G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4052G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+1973G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-6012G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6364G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6364G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6367G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6364G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+1973G>C||||||
1	732971	.	G	C	114.67	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||3288|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>C|||||2078|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||3288|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6328G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-4016G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2009G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5976G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6328G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6328G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6331G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6328G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2009G>C||||||
1	732989	.	C	T	234.48	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||3270|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||2096|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||3270|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6310C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3998C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2027C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5958C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6310C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6310C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6313C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6310C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2027C>T||||||
1	733013	rs4951860	T	C	468.29	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||3246|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||2120|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||3246|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6286T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3974T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2051T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5934T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6286T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6286T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6289T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6286T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2051T>C||||||
1	733171	.	G	A	114.98	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||3088|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||2278|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||3088|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3816G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2209G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5776G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6131G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6128G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2209G>A||||||
1	733235	.	T	G	127.49	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>C|||||3024|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>G|||||2342|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>C|||||3024|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-6064T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3752T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2273T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5712T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-6064T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-6064T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-6067T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-6064T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2273T>G||||||
1	733312	.	G	C	31.8	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||2947|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>C|||||2419|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||2947|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5987G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3675G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2350G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5635G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5987G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5987G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5990G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5987G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2350G>C||||||
1	733350	.	T	G	188.98	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>C|||||2909|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>G|||||2457|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>C|||||2909|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5949T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3637T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2388T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5597T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5949T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5949T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5952T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5949T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2388T>G||||||
1	733429	.	C	A	100.41	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>T|||||2830|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>A|||||2536|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>T|||||2830|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5870C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3558C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2467C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5518C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5870C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5870C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5873C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5870C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2467C>A||||||
1	733431	.	G	A	144.59	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||2828|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||2538|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||2828|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5868G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3556G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2469G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5516G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5868G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5868G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5871G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5868G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2469G>A||||||
1	733564	.	C	T	99.7	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||2695|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||4968|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||2671|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||2695|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5735C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3423C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2602C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5383C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5735C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5735C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5738C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5735C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2602C>T||||||
1	733568	.	T	G	198.94	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>C|||||2691|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>C|||||4964|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>G|||||2675|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>C|||||2691|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5731T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3419T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2606T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5379T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5731T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5731T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5734T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5731T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2606T>G||||||
1	733614	.	G	A	4.15	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||2645|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4918|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||2721|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||2645|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5685G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3373G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2652G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5333G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5685G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5685G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5688G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5685G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2652G>A||||||
1	733734	.	A	C	122.81	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>G|||||2525|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>G|||||4798|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>C|||||2841|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>G|||||2525|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5565A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3253A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2772A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5213A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5565A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5565A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5568A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5565A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2772A>C||||||
1	733736	.	G	T	133.77	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>A|||||2523|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>A|||||4796|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>T|||||2843|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>A|||||2523|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5563G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3251G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2774G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5211G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5563G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5563G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5566G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5563G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2774G>T||||||
1	733819	.	A	G	99.35	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||2440|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||4713|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||2926|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||2440|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5480A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3168A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2857A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5128A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5480A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5480A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5483A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5480A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2857A>G||||||
1	733865	.	A	G	58.7	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||2394|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||4667|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||2972|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||2394|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5434A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3122A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2903A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5082A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5434A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5434A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5437A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5434A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2903A>G||||||
1	733895	.	A	G	427.39	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||2364|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||4637|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||3002|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||2364|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5404A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3092A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2933A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5052A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5404A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5404A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5407A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5404A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2933A>G||||||
1	733899	.	A	G	24.59	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||2360|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||4633|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||3006|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||2360|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5400A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-3088A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+2937A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-5048A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5400A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5400A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5403A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5400A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+2937A>G||||||
1	733998	rs61770164	C	T	10339.03	.	AC=368;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||2261|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||4534|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||3105|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||2261|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5301C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2989C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3036C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4949C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5301C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5301C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5304C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5301C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3036C>T||||||
1	734031	.	T	C	76.76	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||2228|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||4501|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||3138|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||2228|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5268T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2956T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3069T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4916T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5268T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5268T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5271T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5268T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3069T>C||||||
1	734042	rs61770165	G	A	11284.55	.	AC=402;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||2217|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4490|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3149|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||2217|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5257G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2945G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3080G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4905G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5257G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5257G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5260G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5257G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3080G>A||||||
1	734162	.	G	A	453.79	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||2097|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4370|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3269|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||2097|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5137G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2825G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3200G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4785G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5137G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5137G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5140G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5137G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3200G>A||||||
1	734289	rs2427932	G	A	1135.17	.	AC=71;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||1970|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4243|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3396|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||1970|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-5010G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2698G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3327G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4658G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-5010G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-5010G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-5013G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-5010G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3327G>A||||||
1	734320	.	C	T	14.29	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||1939|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||4212|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||3427|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||1939|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4979C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2667C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3358C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4627C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4979C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4979C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4982C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4979C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3358C>T||||||
1	734332	rs112204126	A	G	45.74	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||1927|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||4200|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||3439|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||1927|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4967A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2655A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3370A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4615A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4967A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4967A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4970A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4967A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3370A>G||||||
1	734338	.	G	C	16.27	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||1921|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>G|||||4194|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>C|||||3445|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||1921|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4961G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2649G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3376G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4609G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4961G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4961G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4964G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4961G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3376G>C||||||
1	734340	.	G	A	1734.25	.	AC=47;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||1919|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4192|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3447|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||1919|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4959G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2647G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3378G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4607G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4959G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4959G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4962G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4959G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3378G>A||||||
1	734349	.	T	C	3103.14	.	AC=95;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||1910|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||4183|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||3456|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||1910|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4950T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2638T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3387T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4598T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4950T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4950T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4953T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4950T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3387T>C||||||
1	734360	.	C	T	15.8	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||1899|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||4172|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||3467|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||1899|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4939C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2627C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3398C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4587C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4939C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4939C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4942C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4939C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3398C>T||||||
1	734383	.	G	A	1862.63	.	AC=51;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||1876|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4149|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3490|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||1876|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2604G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3421G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4564G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4919G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3421G>A||||||
1	734422	.	G	A	540.81	.	AC=27;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||1837|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4110|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3529|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||1837|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4877G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2565G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3460G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4525G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4877G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4877G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4880G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4877G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3460G>A||||||
1	734458	.	C	G	92.67	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>C|||||1801|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>C|||||4074|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||3565|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>C|||||1801|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4841C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2529C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3496C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4489C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4841C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4841C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4844C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4841C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3496C>G||||||
1	734462	rs12564807	G	A	6059.63	.	AC=276;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||1797|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||4070|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3569|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||1797|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4837G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2525G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3500G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4485G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4837G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4837G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4840G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4837G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3500G>A||||||
1	734491	rs7518433	T	C	10839.48	.	AC=430;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||1768|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||4041|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||3598|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||1768|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2496T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3529T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4456T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4811T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3529T>C||||||
1	734508	.	C	A	251.73	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>T|||||1751|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>T|||||4024|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>A|||||3615|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>T|||||1751|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4791C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2479C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3546C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4439C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4791C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4791C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4794C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4791C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3546C>A||||||
1	734566	.	G	A	35970.0	.	AC=443;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||1693|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||3966|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||3673|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||1693|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2421G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3604G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4381G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4736G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4733G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3604G>A||||||
1	734620	rs114843608	A	G	25912.19	.	AC=370;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||1639|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||3912|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||3727|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||1639|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4679A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2367A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3658A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4327A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4679A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4679A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4682A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4679A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3658A>G||||||
1	734848	.	T	C	99.04	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||1411|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||3684|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||3955|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||1411|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4451T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2139T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3886T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4099T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4451T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4451T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4454T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4451T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3886T>C||||||
1	734882	.	A	G	151.17	.	AC=16;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||1377|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||3650|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||3989|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||1377|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4417A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2105A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3920A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4065A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4417A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4417A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4420A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4417A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3920A>G||||||
1	734907	.	T	C	43.25	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||1352|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||3625|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||4014|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||1352|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4392T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2080T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3945T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-4040T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4392T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4392T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4395T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4392T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3945T>C||||||
1	734951	rs61770166	A	G	8510.57	.	AC=166;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||1308|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||3581|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||4058|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||1308|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4348A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-2036A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+3989A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3996A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4348A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4348A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4351A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4348A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.371+3989A>G||||||
1	735058	.	G	C	13.35	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||1201|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>G|||||3474|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>C|||||4165|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||1201|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4241G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1929G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+4096G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3889G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4241G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4241G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4244G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4241G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3889G>C||||||
1	735068	rs2427928	A	G	851.17	.	AC=39;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||1191|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||3464|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||4175|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||1191|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4231A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1919A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+4106A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3879A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4231A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4231A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4234A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4231A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3879A>G||||||
1	735111	.	G	C	24.84	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||1148|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>G|||||3421|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>C|||||4218|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||1148|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4188G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1876G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+4149G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3836G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4188G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4188G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4191G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4188G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3836G>C||||||
1	735122	.	T	C	417.82	.	AC=27;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||1137|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||3410|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||4229|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||1137|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1865T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+4160T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3825T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4180T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3825T>C||||||
1	735138	.	T	G	73.66	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>C|||||1121|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>C|||||3394|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>G|||||4245|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>C|||||1121|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4161T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1849T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.397+4176T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3809T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4161T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4161T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4164T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4161T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3809T>G||||||
1	735152	.	C	G	261.97	.	AC=21;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>C|||||1107|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>C|||||3380|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>G|||||4259|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>C|||||1107|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-4147C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1835C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-4179C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3795C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-4147C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-4147C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-4150C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-4147C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3795C>G||||||
1	735347	.	T	C	961.28	.	AC=24;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||4809|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||4832|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||4965|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||912|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||3185|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||4454|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||912|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1640T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3984T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3600T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3955T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3952T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3600T>C||||||
1	735419	.	T	C	62.89	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||4737|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||4760|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||4893|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||840|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||3113|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||4526|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||840|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3880T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1568T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3912T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3528T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3880T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3880T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3883T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3880T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3528T>C||||||
1	735426	.	G	A	20655.2	.	AC=527;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||4730|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||4753|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||4886|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||833|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||3106|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||4533|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||833|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3873G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1561G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3905G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3521G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3873G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3873G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3876G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3873G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3521G>A||||||
1	735447	.	T	C	141.34	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||4709|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||4732|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||4865|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||812|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||3085|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||4554|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||812|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3852T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1540T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3884T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3500T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3852T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3852T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3855T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3852T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3500T>C||||||
1	735544	.	T	C	70.19	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||4612|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||4635|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||4768|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||715|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||2988|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168T>C|||||4651|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||715|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1443T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3787T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3403T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3758T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3755T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3403T>C||||||
1	735636	.	A	G	194.23	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||4520|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||4543|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||4676|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>C|||||623|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||2896|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168A>G|||||4743|,G|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>C|||||623|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3663A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1351A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3695A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3311A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3663A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3663A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3666A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3663A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3311A>G||||||
1	735663	.	G	A	40.9	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||4493|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||4516|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||4649|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||596|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||2869|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>A|||||4770|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||596|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3636G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1324G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3668G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3284G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3636G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3636G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3639G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3636G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3284G>A||||||
1	735682	.	G	C	5328.8	.	AC=79;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>C|||||4474|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>C|||||4497|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>C|||||4630|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||577|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>G|||||2850|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168G>C|||||4789|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||577|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3617G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1305G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3649G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3265G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3617G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3617G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3620G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3617G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3265G>C||||||
1	735830	.	C	T	228.29	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||4326|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||4349|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||4482|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>A|||||429|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||2702|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585745|lincRNA||n.*168C>T|||||4937|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>A|||||429|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3469C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1157C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3501C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3117C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3469C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3469C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3472C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3469C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3117C>T||||||
1	735899	.	G	C	110.32	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>C|||||4257|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>C|||||4280|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>C|||||4413|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>G|||||360|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>G|||||2633|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>G|||||360|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3400G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1088G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3432G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-3048G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3400G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3400G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3403G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3400G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-3048G>C||||||
1	735985	rs12405651	G	A	1376.85	.	AC=63;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||4171|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||4194|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||4327|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||274|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||2547|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||274|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3314G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-1002G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3346G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2962G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3314G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3314G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3317G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3314G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2962G>A||||||
1	736151	.	G	A	259.13	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||4005|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||4028|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||4161|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||108|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||2381|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||108|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-836G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3180G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2796G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3151G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3148G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2796G>A||||||
1	736186	.	G	A	289.77	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||3970|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||3993|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||4126|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523C>T|||||73|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||2346|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523C>T|||||73|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3113G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-801G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3145G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2761G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3113G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3113G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3116G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3113G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2761G>A||||||
1	736238	.	C	A	282.62	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>A|||||3918|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>A|||||3941|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>A|||||4074|,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523G>T|||||21|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>T|||||2294|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523G>T|||||21|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3061C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-749C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3093C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2709C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3061C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3061C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3064C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3061C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2709C>A||||||
1	736249	.	A	T	252.7	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>T|||||3907|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>T|||||3930|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>T|||||4063|,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523T>A|||||10|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>A|||||2283|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523T>A|||||10|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3050A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-738A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3082A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2698A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3050A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3050A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3053A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3050A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2698A>T||||||
1	736253	.	T	C	233.09	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||3903|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||3926|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||4059|,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.*523A>G|||||6|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||2279|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.*523A>G|||||6|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3046T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-734T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3078T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2694T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3046T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3046T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3049T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3046T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2694T>C||||||
1	736275	.	T	A	187.96	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>A|||||3881|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>A|||||3904|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>A|||||4037|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>T|||||2257|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3024T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-712T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3056T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2672T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3024T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3024T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3027T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3024T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2672T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.507A>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.507A>T||||||
1	736283	rs115403623	A	T	198.21	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>T|||||3873|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>T|||||3896|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>T|||||4029|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>A|||||2249|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3016A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-704A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3048A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2664A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3016A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3016A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3019A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3016A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2664A>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.499T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.499T>A||||||
1	736287	.	A	C	68.05	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>C|||||3869|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>C|||||3892|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>C|||||4025|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>G|||||2245|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3012A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-700A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3044A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2660A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3012A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3012A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3015A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3012A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2660A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.495T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.495T>G||||||
1	736289	rs79010578	T	A	6755.68	.	AC=103;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>A|||||3867|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>A|||||3890|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>A|||||4023|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>T|||||2243|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3010T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-698T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3042T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2658T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3010T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3010T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3013T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3010T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2658T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.493A>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.493A>T||||||
1	736295	rs114602330	A	T	475.91	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>T|||||3861|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>T|||||3884|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>T|||||4017|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>A|||||2237|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-3004A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-692A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3036A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2652A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-3004A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-3004A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-3007A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-3004A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2652A>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.487T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.487T>A||||||
1	736309	.	T	C	152.05	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||3847|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||3870|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||4003|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||2223|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2990T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-678T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-3022T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2638T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2990T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2990T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2993T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2990T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2638T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.473A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.473A>G||||||
1	736376	.	T	G	1236.36	.	AC=43;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>G|||||3780|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>G|||||3803|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>G|||||3936|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>C|||||2156|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2923T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-611T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2955T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2571T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2923T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2923T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2926T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2923T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2571T>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.406A>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.406A>C||||||
1	736386	rs115859535	G	A	294.32	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||3770|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||3793|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||3926|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||2146|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2913G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-601G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2945G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2561G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2913G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2913G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2916G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2913G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2561G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.396C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.396C>T||||||
1	736522	rs4951928	A	T	117.7	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>T|||||3634|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>T|||||3657|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>T|||||3790|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>A|||||2010|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2777A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-465A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2809A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2425A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2777A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2777A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2780A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2777A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2425A>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.260T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.260T>A||||||
1	736523	rs3131974	T	C	130.27	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||3633|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||3656|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||3789|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||2009|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2776T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-464T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2808T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2424T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2776T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2776T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2779T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2776T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2424T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|4/4|n.259A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|4/4|n.259A>G||||||
1	736626	rs4040690	A	C	312.88	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>C|||||3530|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>C|||||3553|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>C|||||3686|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>G|||||1906|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-83T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2673A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-361A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2705A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2321A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2673A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2673A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2676A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2673A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2321A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-83T>G||||||
1	736689	.	T	C	166.62	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||3467|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||3490|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||3623|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||1843|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-146A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2610T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-298T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2642T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2258T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2610T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2610T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2613T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2610T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2258T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-146A>G||||||
1	736736	rs10454457	A	G	316.33	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||3420|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||3443|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||3576|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||1796|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-193T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2563A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-251A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2595A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2211A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2563A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2563A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2566A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2563A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2211A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-193T>C||||||
1	736745	rs4040693	C	T	443.09	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||3411|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||3434|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||3567|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||1787|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-202G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2554C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-242C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2586C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2202C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2554C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2554C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2557C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2554C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2202C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-202G>A||||||
1	736792	.	C	A	94.5	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>A|||||3364|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>A|||||3387|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>A|||||3520|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>T|||||1740|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-249G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2507C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-195C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2539C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2155C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2507C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2507C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2510C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2507C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2155C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-249G>T||||||
1	736840	.	T	A	184.3	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>A|||||3316|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>A|||||3339|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>A|||||3472|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>T|||||1692|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-297A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2459T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-147T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2491T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2107T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2459T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2459T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2462T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2459T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2107T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-297A>T||||||
1	736871	.	T	C	77.36	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||3285|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||3308|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||3441|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||1661|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-328A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2428T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|1/1|n.125-116T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2460T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-2076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2428T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2428T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2431T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2428T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-2076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-328A>G||||||
1	737047	rs11240768	C	T	21.59	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||3109|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||3132|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||3265|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||1485|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-504G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2252C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2284C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1900C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2252C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2252C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2255C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2252C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1900C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-504G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.185C>T||||||
1	737059	rs4040696	A	G	319.93	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||3097|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||3120|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||3253|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||1473|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-516T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2240A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2272A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2240A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2240A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2243A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2240A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1888A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-516T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.197A>G||||||
1	737082	rs2427926	G	C	354.32	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>C|||||3074|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>C|||||3097|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>C|||||3230|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>G|||||1450|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-539C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2217G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2249G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1865G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2217G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2217G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2220G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2217G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1865G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-539C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.220G>C||||||
1	737083	rs114937396	A	G	658.45	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||3073|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||3096|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||3229|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||1449|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-540T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2216A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2248A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1864A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2216A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2216A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2219A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2216A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1864A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-540T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.221A>G||||||
1	737085	rs10454458	C	T	454.94	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||3071|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||3094|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||3227|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||1447|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-542G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2214C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2246C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1862C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2214C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2214C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2217C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2214C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1862C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-542G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.223C>T||||||
1	737125	.	T	A	493.85	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>A|||||3031|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>A|||||3054|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>A|||||3187|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>T|||||1407|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-582A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2174T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2206T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1822T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2174T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2174T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2177T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2174T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1822T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-582A>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.263T>A||||||
1	737130	rs4040699	C	A	521.64	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>A|||||3026|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>A|||||3049|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>A|||||3182|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>T|||||1402|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-587G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2169C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2201C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1817C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2169C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2169C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2172C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2169C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1817C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-587G>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.268C>A||||||
1	737165	rs2427925	G	A	81.94	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||2991|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||3014|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||3147|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||1367|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-622C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2134G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1782G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2134G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2134G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2137G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2134G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1782G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-622C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.303G>A||||||
1	737194	.	C	T	21.92	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||2962|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||2985|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||3118|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||1338|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-651G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2105C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2137C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1753C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2105C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2105C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2108C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2105C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1753C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-651G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.332C>T||||||
1	737244	.	C	T	107.38	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||2912|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||2935|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||3068|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||1288|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-701G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2055C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2087C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1703C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2055C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2055C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2058C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2055C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1703C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-701G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA|2/2|n.382C>T||||||
1	737263	.	G	A	1242.57	.	AC=45;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||2893|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||2916|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||3049|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||1269|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||7|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-720C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-2036G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-2068G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1684G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-2036G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-2036G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-2039G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-2036G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1684G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-720C>T||||||
1	737424	.	T	C	29.97	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||2732|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||2755|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||2888|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||1108|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||168|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-881A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1875T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1907T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1523T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1875T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1875T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1878T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1875T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1523T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-881A>G||||||
1	737494	.	C	G	29.8	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>G|||||2662|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>G|||||2685|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>G|||||2818|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>C|||||1038|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>G|||||238|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-951G>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1805C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1837C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1453C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1805C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1805C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1808C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1805C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1453C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-951G>C||||||
1	737643	.	G	A	913.47	.	AC=65;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||2513|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||2536|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||2669|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||889|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||387|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1100C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1656G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1688G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1304G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1656G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1656G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1659G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1656G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1304G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1100C>T||||||
1	737740	.	G	A	7414.17	.	AC=197;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||2416|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||2439|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||2572|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||792|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||484|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1197C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1559G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1591G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1207G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1559G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1559G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1562G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1559G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1207G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1197C>T||||||
1	737741	.	C	A	90.26	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>A|||||2415|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>A|||||2438|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>A|||||2571|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>T|||||791|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>A|||||485|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1198G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1558C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1590C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1558C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1558C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1561C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1558C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1206C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1198G>T||||||
1	737801	.	T	C	192.43	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||2355|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||2378|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||2511|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||731|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||545|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1258A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1498T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1530T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1146T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1498T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1498T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1501T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1498T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1146T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1258A>G||||||
1	737809	.	G	A	46.83	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||2347|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||2370|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||2503|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||723|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||553|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1266C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1490G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1522G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-1138G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1490G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1490G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1493G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1490G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-1138G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1266C>T||||||
1	737951	.	C	T	330.0	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||2205|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||2228|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||2361|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||581|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||695|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1408G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1348C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1380C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-996C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1348C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1348C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1351C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1348C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-996C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1408G>A||||||
1	737997	.	C	T	51.88	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||2159|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||2182|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||2315|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||535|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||741|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1454G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1302C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1334C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-950C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1302C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1302C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1305C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1302C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-950C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1454G>A||||||
1	738019	.	C	T	124.88	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||2137|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||2160|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||2293|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||513|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||763|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1476G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1312C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-928C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1283C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1280C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-928C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1476G>A||||||
1	738037	.	T	C	9.18	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||2119|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||2142|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||2275|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||495|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||781|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1494A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1262T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1294T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-910T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1262T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1262T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1265T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1262T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-910T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1494A>G||||||
1	738040	.	C	T	14.03	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||2116|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||2139|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||2272|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||492|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||784|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1497G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1259C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1291C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-907C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1259C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1259C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1262C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1259C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-907C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1497G>A||||||
1	738124	.	G	A	370.26	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||2032|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||2055|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||2188|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||408|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||868|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1581C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1175G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1207G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-823G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1175G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1175G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1178G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1175G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-823G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1581C>T||||||
1	738214	.	C	T	558.55	.	AC=37;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||1942|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||1965|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||2098|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||318|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||958|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1671G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1085C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1117C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-733C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1085C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1085C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1088C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1085C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-733C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1671G>A||||||
1	738223	.	T	C	199.32	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1933|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1956|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||2089|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||309|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||967|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1680A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1108T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-724T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-1079T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-1076T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-724T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1680A>G||||||
1	738305	.	A	G	233.52	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||1851|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||1874|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||2007|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129T>C|||||227|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||1049|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1762T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-994A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-1026A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-642A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-994A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-994A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-997A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-994A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-642A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1762T>C||||||
1	738372	.	T	A	259.68	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>A|||||1784|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>A|||||1807|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>A|||||1940|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>T|||||160|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>A|||||1116|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1829A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-927T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-959T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-575T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-927T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-927T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-930T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-927T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-575T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1829A>T||||||
1	738393	.	C	G	65.16	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>G|||||1763|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>G|||||1786|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>G|||||1919|,G|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>C|||||139|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>G|||||1137|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1850G>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-906C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-938C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-554C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-906C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-906C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-909C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-906C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-554C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1850G>C||||||
1	738410	.	C	T	246.34	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||1746|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||1769|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||1902|,T|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129G>A|||||122|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||1154|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1867G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-889C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-921C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-537C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-889C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-889C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-892C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-889C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-537C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1867G>A||||||
1	738420	.	T	C	185.25	.	AC=22;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1736|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1759|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1892|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||112|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1164|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1877A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-879T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-911T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-527T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-879T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-879T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-882T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-879T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-527T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1877A>G||||||
1	738463	.	T	C	86.11	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1693|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1716|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1849|,C|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129A>G|||||69|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1207|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1920A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-836T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-868T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-484T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-836T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-836T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-839T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-836T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-484T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1920A>G||||||
1	738475	.	G	A	790.2	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||1681|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||1704|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||1837|,A|downstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.*129C>T|||||57|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||1219|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1932C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-824G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-856G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-472G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-824G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-824G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-827G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-824G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-472G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1932C>T||||||
1	738539	.	T	C	1514.66	.	AC=49;ANN=C|missense_variant|MODERATE|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|3/3|c.122A>G|p.His41Arg|122/129|122/129|41/42||WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1617|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1640|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1773|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1283|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-1996A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-760T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-792T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-408T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-760T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-760T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-763T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-760T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-408T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-1996A>G||||||
1	738756	.	C	T	209.97	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||1400|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||1423|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||1556|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||1500|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-2213G>A||||||,T|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|2/2|c.42+32G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-543C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-575C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-191C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-543C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-543C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-546C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-543C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-191C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-2213G>A||||||
1	738857	.	T	C	65.0	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1299|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1322|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1455|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1601|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.239-2314A>G||||||,C|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.18-45A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-442T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-474T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|1/3|n.125-90T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-442T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-442T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-445T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-442T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|3/6|n.372-90T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.239-2314A>G||||||
1	738965	rs2905050	G	A	759.52	.	AC=42;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||1191|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||1214|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||1347|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||1709|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2214C>T||||||,A|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.18-153C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-366G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-337G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-334G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2214C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/4|n.143G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/7|n.390G>A||||||
1	739010	rs2488515	T	C	225.26	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1146|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1169|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1302|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1754|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2169A>G||||||,C|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.17+111A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-289T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-321T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-289T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-289T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-292T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-289T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2169A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/4|n.188T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/7|n.435T>C||||||
1	739021	.	T	C	70.04	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1135|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1158|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1291|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1765|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2158A>G||||||,C|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.17+100A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-278T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-310T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-278T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-278T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-281T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-278T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2158A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/4|n.199T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/7|n.446T>C||||||
1	739022	.	G	A	130.85	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||1134|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||1157|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||1290|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||1766|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2157C>T||||||,A|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.17+99C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-277G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-309G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-277G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-277G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-280G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-277G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2157C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/4|n.200G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/7|n.447G>A||||||
1	739059	.	T	C	236.65	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1097|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1120|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1253|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1803|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2120A>G||||||,C|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.17+62A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-240T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-272T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.225+12T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-240T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-240T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-243T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-240T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.472+12T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2120A>G||||||
1	739105	.	T	C	5.29	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1051|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1074|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1207|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1849|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2074A>G||||||,C|intron_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.17+16A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-194T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-226T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.225+58T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-194T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-194T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-197T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-194T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.472+58T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2074A>G||||||
1	739117	.	G	A	412.78	.	AC=16;ANN=A|splice_region_variant&intron_variant|LOW|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/2|c.17+4C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||1039|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||1062|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||1195|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||1861|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2062C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-182G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-214G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.225+70G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-182G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-182G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-185G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-182G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.472+70G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2062C>T||||||
1	739122	.	T	C	29.01	.	AC=9;ANN=C|missense_variant&splice_region_variant|MODERATE|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/3|c.16A>G|p.Ile6Val|16/129|16/129|6/42||WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||1034|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||1057|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1190|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1866|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2057A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-209T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.225+75T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-180T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-177T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.472+75T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2057A>G||||||
1	739132	.	A	C	26.86	.	AC=3;ANN=C|missense_variant|MODERATE|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding|1/3|c.6T>G|p.Phe2Leu|6/129|6/129|2/42||WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>C|||||1024|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>C|||||1047|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>C|||||1180|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>C|||||1876|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+2047T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-167A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-199A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.225+85A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-167A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-167A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-170A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-167A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.472+85A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+2047T>G||||||
1	739210	.	A	G	23777.81	.	AC=590;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||73|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||946|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||969|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||1102|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||1954|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1969T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-89A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-121A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.226-89A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-89A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-89A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-92A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-89A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.473-121A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1969T>C||||||
1	739212	.	G	A	469.17	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||75|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||944|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||967|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||1100|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||1956|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1967C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-87G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-119G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.226-87G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-87G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-87G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-90G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-87G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.473-119G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1967C>T||||||
1	739225	.	A	G	11.47	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||88|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||931|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||954|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||1087|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||1969|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1954T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-74A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-106A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.226-74A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-74A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-74A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-77A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-74A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.473-106A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1954T>C||||||
1	739250	.	T	C	93.0	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||113|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||906|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||929|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||1062|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||1994|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1929A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|1/2|n.38-49T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-81T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|2/3|n.226-49T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|1/2|n.125-49T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|1/3|n.125-49T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|1/3|n.125-52T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|1/3|n.125-49T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.473-81T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1929A>G||||||
1	739321	.	T	C	16.68	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||184|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||835|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||858|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||991|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||2065|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1858A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|3/4|n.398-10T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|4/6|n.473-10T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1858A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.60T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.248T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.147T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.147T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.144T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.147T>C||||||
1	739382	.	G	T	183.35	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>A|||||245|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>T|||||774|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>T|||||797|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>T|||||930|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>T|||||2126|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1797C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1797C>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.121G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.449G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.309G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.208G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.208G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.205G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.208G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.524G>T||||||
1	739395	.	G	A	121.26	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||258|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||761|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||784|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||917|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2139|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1784C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1784C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.134G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.462G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.322G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.221G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.221G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.218G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.221G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.537G>A||||||
1	739410	.	G	A	19.53	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||273|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||746|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||769|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||902|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2154|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1769C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1769C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.149G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.477G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.337G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.236G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.236G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.233G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.236G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.552G>A||||||
1	739426	rs3131973	A	G	16234.37	.	AC=543;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||289|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||730|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||753|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||886|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||2170|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1753T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1753T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.165A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.493A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.353A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.252A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.252A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.249A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.252A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.568A>G||||||
1	739447	.	G	A	148.88	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||310|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||709|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||732|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||865|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2191|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1732C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1732C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.186G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.514G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.374G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.273G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.273G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.270G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.273G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.589G>A||||||
1	739508	.	A	C	365.7	.	AC=24;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>G|||||371|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>C|||||648|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>C|||||671|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>C|||||804|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>C|||||2252|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1671T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1671T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.247A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.575A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.435A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.334A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.334A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.331A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.334A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.650A>C||||||
1	739528	rs3094317	G	A	21969.38	.	AC=598;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||391|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||628|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||651|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||784|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2272|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1651C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1651C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.267G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.595G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.455G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.354G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.354G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.351G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.354G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.670G>A||||||
1	739530	.	G	A	1638.5	.	AC=83;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||393|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||626|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||649|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||782|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2274|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1649C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1649C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.269G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.597G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.457G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.356G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.356G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.353G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.356G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.672G>A||||||
1	739565	rs11485757	G	C	4999.76	.	AC=99;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||428|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>C|||||591|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>C|||||614|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>C|||||747|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>C|||||2309|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1614C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1614C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.304G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.632G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.492G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.391G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.391G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.388G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.391G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.707G>C||||||
1	739596	.	C	T	800.28	.	AC=46;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||459|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||560|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||583|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||716|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||2340|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1583G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1583G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/3|n.335C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/5|n.663C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/4|n.523C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/3|n.422C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/4|n.422C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/4|n.419C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/4|n.422C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/7|n.738C>T||||||
1	739608	.	T	C	1018.07	.	AC=29;ANN=C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.341+6T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.669+6T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.529+6T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.428+6T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.428+6T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.425+6T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+6T>C||||||,C|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.744+6T>C||||||,C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||471|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||548|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||571|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||704|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||2352|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1571A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1571A>G||||||
1	739754	.	A	G	169.28	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||617|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||402|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||425|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||558|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||2498|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1425T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.341+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.669+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.529+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.428+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.428+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.425+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.744+152A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1425T>C||||||
1	739879	.	T	G	66.94	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>C|||||742|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>G|||||277|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>G|||||300|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>G|||||433|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>G|||||2623|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1300A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.341+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.669+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.529+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.428+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.428+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.425+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.744+277T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1300A>C||||||
1	739941	.	G	C	96.65	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||804|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>C|||||215|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>C|||||238|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>C|||||371|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>C|||||2685|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1238C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.342-215G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.670-215G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.530-215G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.429-215G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.429-215G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.426-215G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+339G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.745-215G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1238C>G||||||
1	739978	.	T	C	112.83	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||841|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||178|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||201|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||334|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||2722|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1201A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.342-178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.670-178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.530-178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.429-178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.429-178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.426-178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+376T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.745-178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1201A>G||||||
1	739990	.	G	A	91.63	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||853|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||166|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||189|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||322|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2734|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1189C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.342-166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.670-166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.530-166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.429-166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.429-166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.426-166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+388G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.745-166G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1189C>T||||||
1	740020	.	G	A	179.98	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||883|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1G>A|||||136|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1G>A|||||159|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||292|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2764|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1159C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.342-136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.670-136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.530-136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.429-136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.429-136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.426-136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+418G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.745-136G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1159C>T||||||
1	740114	.	T	C	80.72	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||977|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1T>C|||||42|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1T>C|||||65|,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||198|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||2858|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1065A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.342-42T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.670-42T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.530-42T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.429-42T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.429-42T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.426-42T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+512T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.745-42T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1065A>G||||||
1	740117	.	C	T	83.62	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||980|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1C>T|||||39|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>T|||||62|,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||195|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||2861|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1062G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.342-39C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.670-39C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.530-39C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.429-39C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.429-39C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.426-39C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+515C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.745-39C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1062G>A||||||
1	740154	.	A	G	106.58	.	AC=11;ANN=G|splice_acceptor_variant&intron_variant|HIGH|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|2/2|n.342-2A>G||||||,G|splice_acceptor_variant&intron_variant|HIGH|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|4/4|n.670-2A>G||||||,G|splice_acceptor_variant&intron_variant|HIGH|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|3/3|n.530-2A>G||||||,G|splice_acceptor_variant&intron_variant|HIGH|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|2/2|n.429-2A>G||||||,G|splice_acceptor_variant&intron_variant|HIGH|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|2/3|n.429-2A>G||||||,G|splice_acceptor_variant&intron_variant|HIGH|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|2/3|n.426-2A>G||||||,G|splice_acceptor_variant&intron_variant|HIGH|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|5/6|n.745-2A>G||||||,G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||1017|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.-1A>G|||||2|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1A>G|||||25|,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||158|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||2898|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1025T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+552A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1025T>C||||||
1	740166	.	C	A	145.48	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>T|||||1029|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.-1C>A|||||13|,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>A|||||146|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>A|||||2910|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+1013G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+564C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+1013G>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|3/3|n.352C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|5/5|n.680C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.540C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.439C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/4|n.439C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/4|n.436C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/7|n.755C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.11C>A||||||
1	740200	.	G	A	186.51	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||1063|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||112|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||2944|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+979C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+598G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+979C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|3/3|n.386G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA|5/5|n.714G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.574G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.473G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/4|n.473G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/4|n.470G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/7|n.789G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.45G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/2|n.22G>A||||||
1	740229	.	C	T	202.65	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1092|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||83|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||2973|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||17|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+950G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+627C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+950G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|3/3|n.415C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.603C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.502C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/4|n.502C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/4|n.499C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/7|n.818C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.74C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/2|n.51C>T||||||
1	740233	.	A	G	90.86	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||1096|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1A>G|||||79|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||2977|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||21|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+946T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+631A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+946T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|3/3|n.419A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.607A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.506A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/4|n.506A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/4|n.503A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/7|n.822A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.78A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/2|n.55A>G||||||
1	740243	.	T	C	2523.75	.	AC=83;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||1106|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1T>C|||||69|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||2987|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||31|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+936A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+641T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+936A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA|3/3|n.429T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.617T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.516T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/4|n.516T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/4|n.513T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/7|n.832T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.88T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/2|n.65T>C||||||
1	740284	.	C	T	106.1	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1147|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1C>T|||||28|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||29|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3028|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||72|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+895G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+682C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+895G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.658C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.557C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/4|n.557C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/4|n.554C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/7|n.873C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.129C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/2|n.106C>T||||||
1	740285	.	G	A	366.83	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||1148|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.-1G>A|||||27|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||30|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||3029|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||73|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+894C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+683G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+894C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.659G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.558G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/4|n.558G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/4|n.555G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/7|n.874G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.130G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/2|n.107G>A||||||
1	740364	.	C	A	114.61	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>T|||||1227|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>A|||||109|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>A|||||3108|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>A|||||152|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+815G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+18C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+18C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+762C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+18C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+815G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+18C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+18C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.738C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.637C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.209C>A||||||
1	740388	.	G	C	119.75	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||1251|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>C|||||133|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>C|||||3132|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>C|||||176|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+791C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+42G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+42G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+786G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+42G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+791C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+42G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+42G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.762G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.661G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.233G>C||||||
1	740391	.	C	G	148.82	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>C|||||1254|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>G|||||136|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>G|||||3135|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>G|||||179|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+788G>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+45C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+45C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+789C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+45C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+788G>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+45C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+45C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.765C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.664C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.236C>G||||||
1	740408	.	C	T	19.11	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1271|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||153|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3152|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||196|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+771G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+62C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+62C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+806C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+62C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+771G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+62C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+62C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.782C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.681C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.253C>T||||||
1	740416	rs116024440	A	G	9068.75	.	AC=115;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||1279|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||161|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||3160|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||204|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+763T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+70A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+70A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+814A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+70A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+763T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+70A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+70A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.790A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.689A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.261A>G||||||
1	740493	.	A	C	96.11	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>G|||||1356|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||4996|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>C|||||238|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>C|||||3237|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>C|||||281|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+686T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+147A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+147A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+891A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+147A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+686T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+147A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+147A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA|4/4|n.867A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA|3/3|n.766A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.338A>C||||||
1	740525	.	G	A	14.5	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||1388|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||4964|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||270|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||3269|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||313|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||18|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||18|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+654C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+179G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+179G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+923G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+179G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+654C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+179G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+179G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.370G>A||||||
1	740578	rs7521650	G	C	1040.44	.	AC=49;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||1441|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>G|||||4911|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>C|||||323|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>C|||||3322|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>C|||||366|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>C|||||71|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>C|||||71|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+601C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+232G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+232G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+976G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+232G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+601C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+232G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+232G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.423G>C||||||
1	740586	.	G	T	899.34	.	AC=41;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>A|||||1449|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||4903|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>T|||||331|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>T|||||3330|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>T|||||374|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||79|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||79|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+593C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+240G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+240G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+984G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+240G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+593C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+240G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+240G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA|1/1|n.431G>T||||||
1	740703	rs2905049	A	T	47.48	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>A|||||1566|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>A|||||4786|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>T|||||448|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>T|||||3447|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>T|||||491|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>T|||||196|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>T|||||196|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>T|||||53|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+476T>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+357A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+357A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1101A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+357A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+476T>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+357A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+357A>T||||||
1	740735	.	A	G	27.04	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||1598|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||4754|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||480|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||3479|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||523|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||228|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||228|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||85|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+444T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+389A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+389A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1133A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+389A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+444T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+389A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+389A>G||||||
1	740780	.	T	C	63.6	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||1643|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||4709|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||525|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||3524|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||568|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||273|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||273|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||130|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+399A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+434T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+434T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1178T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+434T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+399A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+434T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+434T>C||||||
1	740789	.	C	A	144.28	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>T|||||1652|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>T|||||4700|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>A|||||534|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>A|||||3533|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>A|||||577|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>A|||||282|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>A|||||282|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>A|||||139|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+390G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+443C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+443C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1187C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+443C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+390G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+443C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+443C>A||||||
1	740794	.	T	C	186.29	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||1657|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||4695|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||539|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||3538|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||582|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||287|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||287|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||144|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+385A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+448T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+448T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1192T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+448T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+385A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+448T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+448T>C||||||
1	740826	.	C	T	51.0	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1689|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4663|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||571|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3570|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||614|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||319|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||319|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||176|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+353G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+480C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+480C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1224C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+480C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+353G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+480C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+480C>T||||||
1	740857	rs12082473	G	A	7503.65	.	AC=88;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||1720|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||4632|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||602|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||3601|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||645|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||350|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||350|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||207|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+322C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+511G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+511G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1255G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+511G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+322C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+511G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+511G>A||||||
1	740893	.	A	G	79.35	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||1756|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||4596|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||638|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||3637|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||681|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||386|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||386|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||243|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+286T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+547A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+547A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1291A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+547A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+286T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+547A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+547A>G||||||
1	740899	.	C	T	53.23	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1762|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4590|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||644|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3643|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||687|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||392|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||392|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||249|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+280G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+553C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+553C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1297C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+553C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+280G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+553C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+553C>T||||||
1	740950	.	G	A	31.57	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||1813|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||4539|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||695|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||3694|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||738|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||443|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||443|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||300|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+229C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+604G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+604G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1348G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+604G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+229C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+604G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+604G>A||||||
1	740966	.	T	G	627.0	.	AC=34;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>C|||||1829|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>C|||||4523|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>G|||||711|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>G|||||3710|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>G|||||754|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>G|||||459|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>G|||||459|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>G|||||316|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+213A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+620T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+620T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1364T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+620T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+213A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+620T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+620T>G||||||
1	740979	.	C	T	170.22	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1842|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4510|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||724|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3723|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||767|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||472|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||472|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||329|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+200G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+633C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+633C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1377C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+633C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+200G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+633C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+633C>T||||||
1	740997	.	G	C	138.57	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||1860|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>G|||||4492|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>C|||||742|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>C|||||3741|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>C|||||785|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>C|||||490|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>C|||||490|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>C|||||347|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+182C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+651G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+651G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1395G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+651G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+182C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+651G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+651G>C||||||
1	741011	.	C	T	282.16	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1874|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4478|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||756|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3755|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||799|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||504|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||504|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||361|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+168G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.619+665C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+665C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1409C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+665C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+168G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+665C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+665C>T||||||
1	741068	.	C	T	148.85	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||1931|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4421|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||813|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3812|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||856|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||561|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||561|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||418|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+111G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-698C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+722C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.428+1466C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+722C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+111G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+722C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+722C>T||||||
1	741100	.	A	C	72.82	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>G|||||1963|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||4389|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>C|||||845|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>C|||||3844|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>C|||||888|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>C|||||593|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>C|||||593|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>C|||||450|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/3|n.238+79T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-666A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+754A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1497A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+754A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/3|n.238+79T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+754A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+754A>C||||||
1	741201	.	C	T	210.22	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||2064|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4288|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||946|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3945|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||989|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||694|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||694|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||551|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-565C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+855C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1396C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+855C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+855C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+855C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/4|n.216G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/4|n.216G>A||||||
1	741204	.	A	G	69.36	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||2067|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||4285|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||949|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||3948|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||992|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||697|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||697|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||554|,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-562A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+858A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1393A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+858A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+858A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+858A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/4|n.213T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/4|n.213T>C||||||
1	741244	.	C	T	87.53	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||2107|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4245|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||989|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||3988|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||1032|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||737|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||737|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||594|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-522C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+898C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1353C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+898C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+898C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+898C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/4|n.173G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/4|n.173G>A||||||
1	741258	.	C	T	52.85	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||2121|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||4231|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||1003|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||4002|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||1046|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||751|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||751|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||608|,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-508C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+912C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1339C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+912C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+912C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+912C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/4|n.159G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/4|n.159G>A||||||
1	741267	.	T	C	2661.55	.	AC=87;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||2130|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||4222|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1012|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4011|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||1055|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||760|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||760|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||617|,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-499T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+921T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1330T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+921T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+921T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+921T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|3/4|n.150A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|3/4|n.150A>G||||||
1	741278	.	G	A	60.52	.	AC=12;ANN=A|splice_region_variant&intron_variant|LOW|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-7C>T||||||,A|splice_region_variant&intron_variant|LOW|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-7C>T||||||,A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||2141|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||4211|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||1023|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||4022|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||1066|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||771|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||771|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||628|,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-488G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+932G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1319G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+932G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+932G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+932G>A||||||
1	741291	.	T	G	42.63	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>C|||||2154|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>C|||||4198|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>G|||||1036|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>G|||||4035|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>G|||||1079|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>G|||||784|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>G|||||784|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>G|||||641|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-20A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-475T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+945T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1306T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+945T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-20A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+945T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+945T>G||||||
1	741358	.	T	A	89.82	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>T|||||2221|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>T|||||4131|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>A|||||1103|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>A|||||4102|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>A|||||1146|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>A|||||851|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>A|||||851|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>A|||||708|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-87A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-408T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+1012T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1239T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+1012T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-87A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+1012T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+1012T>A||||||
1	741397	.	A	G	5576.1	.	AC=135;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||2260|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||4092|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||1142|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||4141|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||1185|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||890|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||890|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||747|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-126T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-369A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+1051A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1200A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+1051A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-126T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+1051A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+1051A>G||||||
1	741429	.	G	A	24.52	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||2292|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||4060|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||1174|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||4173|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||1217|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||922|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||922|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||779|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-158C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-337G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.616+1083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1168G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.935+1083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-158C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.168+1083G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.35+1083G>A||||||
1	741481	.	T	C	341.94	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||2344|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||4008|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1226|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4225|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||1269|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||974|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||974|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||831|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-210A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-285T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-1116T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1116T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-1116T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-210A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-1116T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-1116T>C||||||
1	741541	.	T	C	117.51	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||2404|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3948|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1286|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4285|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||1329|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1034|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1034|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||891|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-270A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-225T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-1056T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1056T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-1056T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-270A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-1056T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-1056T>C||||||
1	741558	.	G	T	2135.46	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>A|||||2421|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||3931|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>T|||||1303|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>T|||||4302|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>T|||||1346|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||1051|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||1051|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>T|||||908|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-287C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-208G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-1039G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1039G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-1039G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-287C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-1039G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-1039G>T||||||
1	741579	rs61770168	T	C	7747.36	.	AC=313;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||2442|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3910|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1324|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4323|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||1367|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1072|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1072|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||929|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-308A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-187T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-1018T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-1018T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-1018T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-308A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-1018T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-1018T>C||||||
1	741627	.	A	G	177.66	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||2490|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||3862|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||1372|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||4371|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||1415|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||1120|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||1120|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||977|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-356T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-139A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-970A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-970A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-970A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-356T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-970A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-970A>G||||||
1	741646	.	T	C	125.95	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||2509|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3843|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1391|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4390|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||1434|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1139|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1139|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||996|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-375A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-120T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-951T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-951T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-951T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-375A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-951T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-951T>C||||||
1	741744	.	G	A	122.56	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||2607|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||3745|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||1489|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||4488|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||1532|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||1237|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||1237|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||1094|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-473C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|3/3|n.620-22G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-853G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-853G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-853G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-473C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-853G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-853G>A||||||
1	741794	.	T	C	30.76	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||2657|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3695|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1539|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4538|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||1582|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1287|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1287|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||1144|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-523A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-803T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-803T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-803T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-523A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-803T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-803T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|4/4|n.648T>C||||||
1	741833	.	C	T	1771.24	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||2696|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||3656|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||1578|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||4577|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||1621|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||1326|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||1326|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||1183|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-562G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-764C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-764C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-764C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-562G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-764C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-764C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA|4/4|n.687C>T||||||
1	741841	.	A	G	160.43	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||2704|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||3648|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||1586|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||4585|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||1629|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||1334|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||1334|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||2|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||1191|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-570T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-756A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-756A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-756A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-570T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-756A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-756A>G||||||
1	741850	.	C	T	1372.7	.	AC=67;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||2713|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||3639|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||1595|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||4594|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||1638|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||1343|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||1343|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||11|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||1200|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-579G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-747C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-747C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-747C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-579G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-747C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-747C>T||||||
1	741907	.	G	A	109.02	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||2770|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||3582|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||1652|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||4651|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||1695|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||1400|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||1400|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||68|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||1257|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-636C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-690G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-690G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-690G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-636C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-690G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-690G>A||||||
1	741990	.	C	T	1000.89	.	AC=50;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||2853|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||3499|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||1735|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||4734|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||1778|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||1483|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||1483|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||151|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||1340|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-719G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-607C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-607C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-607C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-719G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-607C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-607C>T||||||
1	742082	.	G	A	995.19	.	AC=54;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||2945|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||3407|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||1827|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394G>A|||||4826|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||1870|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||1575|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||1575|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||243|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||1432|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-811C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-515G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-515G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-515G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-811C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-515G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-515G>A||||||
1	742107	.	T	C	344.13	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||2970|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3382|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1852|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4851|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||1895|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1600|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1600|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||268|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||1457|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-836A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-836A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-490T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-490T>C||||||
1	742213	.	A	G	41.33	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||3076|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||3276|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||1958|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394A>G|||||4957|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||2001|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||1706|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||1706|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||374|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||1563|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-942T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-384A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-384A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-384A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-942T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-384A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-384A>G||||||
1	742220	rs60070474	T	C	20.11	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||3083|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3269|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||1965|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394T>C|||||4964|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||2008|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1713|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1713|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||381|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||1570|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-949A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-377T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-377T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-377T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-949A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-377T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-377T>C||||||
1	742234	.	C	T	13.64	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||3097|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||3255|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||1979|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000585768|lincRNA||n.*394C>T|||||4978|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||2022|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||1727|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||1727|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||395|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||1584|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-963G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-363C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-363C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-363C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-963G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-363C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-363C>T||||||
1	742264	.	T	C	14.91	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||3127|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3225|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||2009|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||2052|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1757|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1757|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||425|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||1614|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-993A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-333T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-333T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-333T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-993A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-333T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-333T>C||||||
1	742292	.	C	T	99.02	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||3155|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||3197|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||2037|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||2080|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||1785|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||1785|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||453|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||1642|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-1021G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-305C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-305C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-305C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-1021G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-305C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-305C>T||||||
1	742310	.	T	C	97.92	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||3173|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||3179|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||2055|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||2098|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||1803|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||1803|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||471|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||1660|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-1039A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-287T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-287T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-287T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-1039A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-287T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-287T>C||||||
1	742359	.	A	G	64.07	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||3222|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||3130|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||2104|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||2147|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||1852|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||1852|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||520|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||1709|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-1088T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-238A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-238A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-238A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-1088T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-238A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-238A>G||||||
1	742425	.	G	C	178.55	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||3288|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>G|||||3064|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>C|||||2170|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>C|||||2213|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>C|||||1918|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>C|||||1918|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>C|||||586|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>C|||||1775|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-1154C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-172G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-172G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-172G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-1154C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-172G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-172G>C||||||
1	742536	.	T	C	78.89	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||3399|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||2953|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||2281|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||2324|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||2029|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||2029|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||697|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||1886|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-1265A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-61T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-61T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-61T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-1265A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-61T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-61T>C||||||
1	742594	.	C	T	1046.65	.	AC=62;ANN=T|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|3/3|n.617-3C>T||||||,T|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|2/3|n.429-3C>T||||||,T|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|6/6|n.936-3C>T||||||,T|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|1/1|n.169-3C>T||||||,T|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|1/2|n.36-3C>T||||||,T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||3457|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||2895|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||2339|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||2382|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||2087|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||2087|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||755|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||1944|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.146-1323G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.146-1323G>A||||||
1	742653	.	A	G	42.44	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||3516|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||2836|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||2398|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||2441|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||2146|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||2146|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||814|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||2003|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1301T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1301T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|4/4|n.673A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/4|n.485A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|7/7|n.992A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|2/2|n.225A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/3|n.92A>G||||||
1	742661	.	A	C	539.82	.	AC=47;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>G|||||3524|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||2828|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>C|||||2406|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>C|||||2449|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>C|||||2154|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>C|||||2154|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>C|||||822|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>C|||||2011|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1293T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1293T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA|4/4|n.681A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/4|n.493A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA|7/7|n.1000A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|2/2|n.233A>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/3|n.100A>C||||||
1	742813	.	C	T	2889.89	.	AC=105;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||3676|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||2676|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||2558|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||2601|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||2306|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||2306|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||974|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||119|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||112|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||2163|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1141G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+110C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1141G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+110C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|2/2|n.385C>T||||||
1	742825	.	A	G	21.86	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||3688|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||2664|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||2570|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||2613|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||2318|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||2318|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||986|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||131|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||124|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||2175|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1129T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+122A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1129T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+122A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|2/2|n.397A>G||||||
1	742826	.	T	G	61.92	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>C|||||3689|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>C|||||2663|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>G|||||2571|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>G|||||2614|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>G|||||2319|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>G|||||2319|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>G|||||987|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>G|||||132|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>G|||||125|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>G|||||2176|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1128A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+123T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1128A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+123T>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|2/2|n.398T>G||||||
1	742832	.	C	A	14.22	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>T|||||3695|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>T|||||2657|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>A|||||2577|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>A|||||2620|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>A|||||2325|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>A|||||2325|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>A|||||993|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>A|||||138|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>A|||||131|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>A|||||2182|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1122G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+129C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1122G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+129C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|2/2|n.404C>A||||||
1	742833	.	C	T	172.61	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||3696|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||2656|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||2578|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||2621|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||2326|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||2326|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||994|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||139|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||132|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||2183|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1121G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+130C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1121G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+130C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA|2/2|n.405C>T||||||
1	742847	.	A	G	44.22	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||3710|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||2642|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||2592|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||2635|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||2340|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||2340|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||1008|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||153|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||146|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||2197|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||2|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1107T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+144A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1107T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+144A>G||||||
1	742923	.	T	C	280.19	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||3786|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||2566|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||2668|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||2711|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||2416|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||2416|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||1084|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||229|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||222|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||2273|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||78|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1031A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+220T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1031A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+220T>C||||||
1	742944	.	T	C	165.75	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||3807|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||2545|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||2689|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||2732|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||2437|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||2437|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||1105|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||250|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||243|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||2294|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||99|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+1010A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+241T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+1010A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+241T>C||||||
1	742975	.	G	A	11.44	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||3838|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||2514|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||2720|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||2763|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||2468|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||2468|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||1136|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||281|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||274|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||2325|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||130|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+979C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+272G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+979C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+272G>A||||||
1	742990	.	C	T	1200.53	.	AC=60;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||3853|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||2499|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||2735|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||2778|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||2483|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||2483|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||1151|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||296|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||289|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||2340|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||145|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+964G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+287C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+964G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+287C>T||||||
1	743021	rs3964475	T	C	1691.13	.	AC=126;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||3884|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||2468|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||2766|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||2809|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||2514|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||2514|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||1182|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||327|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||320|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||2371|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||176|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+933A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+318T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+933A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+318T>C||||||
1	743037	.	C	A	863.56	.	AC=40;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>T|||||3900|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>T|||||2452|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>A|||||2782|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>A|||||2825|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>A|||||2530|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>A|||||2530|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>A|||||1198|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>A|||||343|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>A|||||336|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>A|||||2387|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>A|||||192|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+917G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+334C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+917G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+334C>A||||||
1	743044	.	G	T	299.22	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>A|||||3907|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||2445|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>T|||||2789|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>T|||||2832|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||2537|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||2537|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>T|||||1205|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>T|||||350|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>T|||||343|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>T|||||2394|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>T|||||199|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+910C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+341G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+910C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+341G>T||||||
1	743047	.	T	A	258.18	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>T|||||3910|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>T|||||2442|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>A|||||2792|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>A|||||2835|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>A|||||2540|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>A|||||2540|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>A|||||1208|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>A|||||353|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>A|||||346|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>A|||||2397|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>A|||||202|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+907A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+344T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+907A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+344T>A||||||
1	743072	.	C	A	14888.08	.	AC=492;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>T|||||3935|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>T|||||2417|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>A|||||2817|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>A|||||2860|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>A|||||2565|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>A|||||2565|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>A|||||1233|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>A|||||378|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>A|||||371|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>A|||||2422|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>A|||||227|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+882G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+369C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+882G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+369C>A||||||
1	743114	.	A	T	156.81	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>A|||||3977|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>A|||||2375|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>T|||||2859|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>T|||||2902|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>T|||||2607|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>T|||||2607|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>T|||||1275|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>T|||||420|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>T|||||413|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>T|||||2464|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>T|||||269|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+840T>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+411A>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+840T>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+411A>T||||||
1	743152	.	G	T	1668.25	.	AC=46;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>A|||||4015|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||2337|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>T|||||2897|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>T|||||2940|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||2645|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||2645|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>T|||||1313|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>T|||||458|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>T|||||451|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>T|||||2502|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>T|||||307|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+802C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+449G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+802C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+449G>T||||||
1	743154	.	C	T	258.32	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||4017|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||2335|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||2899|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||2942|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||2647|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||2647|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||1315|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||460|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||453|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||2504|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||309|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+800G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+451C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+800G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+451C>T||||||
1	743188	rs2427905	G	A	196.13	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||4051|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||2301|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||2933|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||2976|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||2681|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||2681|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||1349|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||494|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||487|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||2538|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||343|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+766C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+485G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+766C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+485G>A||||||
1	743224	.	A	C	105.97	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>G|||||4087|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||2265|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>C|||||2969|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>C|||||3012|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>C|||||2717|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>C|||||2717|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>C|||||1385|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>C|||||530|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>C|||||523|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>C|||||2574|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>C|||||379|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+730T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+521A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+730T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+521A>C||||||
1	743288	.	G	C	269.02	.	AC=21;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||4151|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>G|||||2201|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>C|||||3033|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>C|||||3076|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>C|||||2781|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>C|||||2781|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>C|||||1449|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>C|||||594|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>C|||||587|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>C|||||2638|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>C|||||443|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+666C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+585G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+666C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+585G>C||||||
1	743356	.	T	C	67.04	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||4219|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||2133|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||3101|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||3144|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||2849|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||2849|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||1517|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||662|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||655|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||2706|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||511|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+598A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+653T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+598A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+653T>C||||||
1	743420	.	G	A	494.35	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||4283|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||2069|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||3165|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||3208|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||2913|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||2913|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||1581|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||726|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||719|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||2770|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||575|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+534C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+717G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+534C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+717G>A||||||
1	743452	.	C	T	343.17	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||4315|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||2037|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||3197|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||3240|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||2945|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||2945|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||1613|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||758|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||751|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||2802|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||607|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+502G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+749C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+502G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+749C>T||||||
1	743483	.	C	T	169.74	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||4346|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||2006|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||3228|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||3271|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||2976|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||2976|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||1644|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||789|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||782|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||2833|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||638|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+471G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+780C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+471G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+780C>T||||||
1	743520	.	T	C	368.33	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||4383|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||1969|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||3265|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||3308|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||3013|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||3013|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||1681|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||826|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||819|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||2870|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||675|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+434A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+817T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+434A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+817T>C||||||
1	743596	.	T	C	55.03	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||4459|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||1893|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||3341|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||3384|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||3089|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||3089|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||1757|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||902|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||895|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||2946|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||751|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+358A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+893T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+358A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+893T>C||||||
1	743607	.	C	T	1586.19	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>A|||||4470|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||1882|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||3352|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||3395|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||3100|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||3100|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||1768|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||913|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||906|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||2957|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||762|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+347G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+904C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+347G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+904C>T||||||
1	743637	.	G	C	947.1	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>G|||||4500|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>G|||||1852|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>C|||||3382|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>C|||||3425|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>C|||||3130|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>C|||||3130|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>C|||||1798|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>C|||||943|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>C|||||936|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>C|||||2987|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>C|||||792|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+317C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+934G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+317C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+934G>C||||||
1	743651	.	T	C	360.33	.	AC=21;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||4514|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||1838|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||3396|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||3439|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||3144|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||3144|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||1812|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||957|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||950|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||3001|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||806|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+303A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+948T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+303A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+948T>C||||||
1	743774	.	A	G	293.08	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||4637|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||1715|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||3519|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||3562|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||3267|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||3267|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||1935|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||1080|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||1073|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||3124|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||929|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+180T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+1071A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+180T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+1071A>G||||||
1	743778	.	A	C	263.11	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>G|||||4641|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||1711|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>C|||||3523|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>C|||||3566|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>C|||||3271|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>C|||||3271|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>C|||||1939|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>C|||||1084|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>C|||||1077|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>C|||||3128|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>C|||||933|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+176T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+1075A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+176T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+1075A>C||||||
1	743779	.	G	A	283.38	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>T|||||4642|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||1710|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||3524|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||3567|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||3272|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||3272|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||1940|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||1085|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||1078|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||3129|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||934|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+175C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+1076G>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+175C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+1076G>A||||||
1	743842	.	T	C	585.98	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||4705|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||1647|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||3587|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||3630|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||3335|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||3335|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||2003|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||1148|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||1141|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||3192|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||997|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+112A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.535+1139T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+112A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.142+1139T>C||||||
1	743919	.	C	A	171.93	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1G>T|||||4782|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>T|||||1570|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>A|||||3664|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>A|||||3707|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>A|||||3412|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>A|||||3412|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>A|||||2080|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>A|||||1225|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>A|||||1218|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>A|||||3269|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>A|||||1074|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|2/3|n.145+35G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-1119C>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|2/3|n.145+35G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-1083C>A||||||
1	744058	.	G	T	10.59	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1C>A|||||4921|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||1431|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>T|||||3803|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>T|||||3846|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||3551|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||3551|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>T|||||2219|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>T|||||1364|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>T|||||1357|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>T|||||3408|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>T|||||1213|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-55C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-980G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-55C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-944G>T||||||
1	744076	.	A	C	1487.06	.	AC=36;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>G|||||4939|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||1413|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>C|||||3821|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>C|||||3864|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>C|||||3569|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>C|||||3569|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>C|||||2237|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>C|||||1382|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>C|||||1375|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>C|||||3426|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>C|||||1231|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-73T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-962A>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-73T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-926A>C||||||
1	744080	.	T	C	50.56	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1A>G|||||4943|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||1409|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||3825|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||3868|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||3573|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||3573|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||2241|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||1386|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||1379|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||3430|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||1235|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-77A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-958T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-77A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-922T>C||||||
1	744088	.	A	G	33.63	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|AL669831.1|ENSG00000269831|transcript|ENST00000599533|protein_coding||c.-1T>C|||||4951|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||1401|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||3833|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||3876|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||3581|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||3581|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||2249|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||1394|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||1387|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||3438|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||1243|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-85T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-950A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-85T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-914A>G||||||
1	744304	.	C	T	8368.94	.	AC=263;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||1185|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||4049|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||4092|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||3797|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||3797|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||2465|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||1610|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||1603|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||3654|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||1459|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-301G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-734C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-301G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-698C>T||||||
1	744348	.	A	G	98.77	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||1141|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||4093|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||4136|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||3841|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||3841|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||2509|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||1654|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||1647|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||3698|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||1503|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-345T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-690A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-345T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-654A>G||||||
1	744389	.	T	A	379.98	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>T|||||1100|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>A|||||4134|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>A|||||4177|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>A|||||3882|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>A|||||3882|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>A|||||2550|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>A|||||1695|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>A|||||1688|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>A|||||3739|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>A|||||1544|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-386A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-649T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-386A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-613T>A||||||
1	744468	.	T	C	85.12	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||1021|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||4213|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||4256|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||3961|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||3961|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||2629|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||1774|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||1767|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||3818|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||1623|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-465A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-570T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-465A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-534T>C||||||
1	744498	.	C	G	123.7	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>C|||||991|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>G|||||4243|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>G|||||4286|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>G|||||3991|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>G|||||3991|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>G|||||2659|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>G|||||1804|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>G|||||1797|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>G|||||3848|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>G|||||1653|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-495G>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-540C>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-495G>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-504C>G||||||
1	744499	.	T	C	139.65	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||990|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||4244|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||4287|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||3992|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||3992|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||2660|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||1805|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||1798|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||3849|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||1654|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-496A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-539T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-496A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-503T>C||||||
1	744550	.	T	C	34.41	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||939|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||4295|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||4338|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||4043|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||4043|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||2711|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||1856|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||1849|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||3900|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||1705|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-547A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-488T>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-547A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-452T>C||||||
1	744600	.	T	G	169.12	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>C|||||889|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>G|||||4345|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>G|||||4388|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>G|||||4093|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>G|||||4093|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>G|||||2761|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>G|||||1906|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>G|||||1899|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>G|||||3950|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>G|||||1755|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-597A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-438T>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-597A>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-402T>G||||||
1	744641	.	C	T	58.6	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||848|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||4386|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||4429|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||4134|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||4134|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||2802|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||1947|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||1940|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||3991|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||1796|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-638G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-397C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-638G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-361C>T||||||
1	744657	.	C	T	393.25	.	AC=21;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||832|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||4402|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||4445|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||4150|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||4150|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||2818|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||1963|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||1956|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||4007|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||1812|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-654G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-381C>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-654G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-345C>T||||||
1	744692	.	G	C	74.87	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>G|||||797|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>C|||||4437|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>C|||||4480|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>C|||||4185|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>C|||||4185|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>C|||||2853|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>C|||||1998|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>C|||||1991|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>C|||||4042|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>C|||||1847|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.96-689C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-346G>C||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.96-689C>G||||||,C|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-310G>C||||||
1	744880	.	G	T	38.8	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||609|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>T|||||4625|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>T|||||4668|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||4373|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||4373|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>T|||||3041|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>T|||||2186|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>T|||||2179|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>T|||||4230|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>T|||||2035|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+567C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-158G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+567C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-122G>T||||||
1	744881	.	A	G	154.07	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||608|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||4626|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||4669|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||4374|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||4374|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||3042|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||2187|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||2180|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||4231|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||2036|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+566T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-157A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+566T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-121A>G||||||
1	744962	.	A	G	551.82	.	AC=33;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||527|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||4707|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||4750|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||4455|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||4455|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||3123|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||2268|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||2261|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||4312|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||2117|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+485T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-76A>G||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+485T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-40A>G||||||
1	744996	.	T	A	24.62	.	AC=1;ANN=A|splice_region_variant&intron_variant|LOW|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|2/2|n.143-6T>A||||||,A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>T|||||493|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>A|||||4741|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>A|||||4784|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>A|||||4489|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>A|||||4489|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>A|||||3157|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>A|||||2302|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>A|||||2295|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>A|||||4346|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>A|||||2151|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+451A>T||||||,A|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-42T>A||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+451A>T||||||
1	745021	.	G	T	8929.81	.	AC=152;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||468|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>T|||||4766|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>T|||||4809|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||4514|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||4514|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>T|||||3182|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>T|||||2327|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>T|||||2320|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>T|||||4371|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>T|||||2176|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+426C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|3/3|n.536-17G>T||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+426C>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.162G>T||||||
1	745052	.	C	T	222.38	.	AC=25;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||437|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||4797|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||4840|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||4545|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||4545|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||3213|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||2358|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||2351|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||4402|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||2207|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+395G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+395G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|4/4|n.550C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.193C>T||||||
1	745074	.	A	G	477.56	.	AC=50;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||415|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>G|||||4819|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>G|||||4862|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||4567|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||4567|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||3235|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||2380|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||2373|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||4424|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||2229|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+373T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+373T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA|4/4|n.572A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.215A>G||||||
1	745113	rs2977633	C	G,T	240.17	.	AC=21;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>C|||||376|,T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||376|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>G|||||4858|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||4858|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>G|||||4901|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||4901|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>G|||||4606|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||4606|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>G|||||4606|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||4606|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>G|||||3274|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||3274|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>G|||||2419|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||2419|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>G|||||4|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>G|||||2412|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||2412|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>G|||||4463|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||4463|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>G|||||2268|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||2268|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+334G>C||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+334G>A||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+334G>C||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+334G>A||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.254C>G||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.254C>T||||||
1	745123	.	A	C	417.71	.	AC=28;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||366|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441A>C|||||4868|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726A>C|||||4911|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>C|||||4616|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>C|||||4616|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>C|||||3284|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>C|||||2429|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>C|||||14|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>C|||||2422|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>C|||||4473|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>C|||||2278|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+324T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+324T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.264A>C||||||
1	745124	.	G	A	311.78	.	AC=34;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||365|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||4869|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||4912|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||4617|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||4617|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||3285|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||2430|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||15|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||2423|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||4474|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||2279|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+323C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+323C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.265G>A||||||
1	745131	.	C	T	189.03	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>A|||||358|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>T|||||4876|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>T|||||4919|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>T|||||4624|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>T|||||4624|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||3292|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||2437|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||22|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||2430|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||4481|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||2286|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+316G>A||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+316G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.272C>T||||||
1	745132	.	G	A	206.21	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>T|||||357|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441G>A|||||4877|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726G>A|||||4920|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>A|||||4625|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>A|||||4625|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||3293|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||2438|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||23|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||2431|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>A|||||4482|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||2287|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+315C>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+315C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.273G>A||||||
1	745163	.	C	A	484.68	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402G>T|||||326|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441C>A|||||4908|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726C>A|||||4951|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881C>A|||||4656|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780C>A|||||4656|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>A|||||3324|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>A|||||2469|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>A|||||54|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>A|||||2462|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>A|||||4513|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>A|||||2318|,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+284G>T||||||,A|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+284G>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.304C>A||||||
1	745178	.	T	C	156.71	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||311|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000429505|lincRNA||n.*441T>C|||||4923|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000590848|lincRNA||n.*726T>C|||||4966|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||4671|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||4671|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||3339|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||2484|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||69|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||2477|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||4528|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||2333|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+269A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+269A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.319T>C||||||
1	745311	.	A	C	646.97	.	AC=40;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>G|||||178|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>C|||||4804|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>C|||||4804|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>C|||||3472|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>C|||||2617|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>C|||||202|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>C|||||2610|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>C|||||4661|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>C|||||2466|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+136T>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+136T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.452A>C||||||
1	745313	.	G	T	62.47	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402C>A|||||176|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>T|||||4806|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>T|||||4806|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>T|||||3474|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>T|||||2619|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>T|||||204|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>T|||||2612|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>T|||||4663|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>T|||||2468|,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+134C>A||||||,T|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+134C>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.454G>T||||||
1	745347	.	T	C	1995.42	.	AC=113;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||142|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||4840|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||4840|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||3508|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||2653|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||238|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||2646|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||4697|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||2502|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+100A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+100A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.488T>C||||||
1	745380	.	T	C	541.0	.	AC=35;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402A>G|||||109|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881T>C|||||4873|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780T>C|||||4873|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||3541|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||2686|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||271|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||2679|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||4730|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||2535|,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+67A>G||||||,C|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+67A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.521T>C||||||
1	745406	.	A	G	213.95	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.*402T>C|||||83|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881A>G|||||4899|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780A>G|||||4899|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||3567|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||2712|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||297|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||2705|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>G|||||4756|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||2561|,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/3|n.95+41T>C||||||,G|intron_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/3|n.95+41T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA|3/3|n.547A>G||||||
1	745493	.	G	C	70.02	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587530|lincRNA||n.*881G>C|||||4986|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000591440|lincRNA||n.*780G>C|||||4986|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>C|||||3654|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>C|||||2799|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>C|||||384|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>C|||||2792|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495G>C|||||4843|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>C|||||2648|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>C|||||53|,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/4|n.49C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|2/2|n.398C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/4|n.49C>G||||||
1	745522	.	C	G	158.62	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>G|||||3683|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>G|||||2828|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>G|||||413|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>G|||||2821|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>G|||||4872|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>G|||||2677|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>G|||||82|,G|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/4|n.20G>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|2/2|n.369G>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/4|n.20G>C||||||
1	745538	.	A	T	6.61	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>T|||||3699|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>T|||||2844|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>T|||||429|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>T|||||2837|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495A>T|||||4888|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>T|||||2693|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>T|||||98|,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript|1/4|n.4T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|2/2|n.353T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene|1/4|n.4T>A||||||
1	745565	.	T	C	112.85	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||24|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||24|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||3726|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||2871|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||456|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||2864|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495T>C|||||4915|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||2720|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||125|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-15A>G||||||
1	745626	.	C	T	451.97	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||85|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||85|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||3787|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||2932|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||517|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||2925|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000587126|lincRNA||n.*495C>T|||||4976|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||2781|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||186|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-76G>A||||||
1	745666	.	G	A	151.8	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||125|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||125|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||3827|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||2972|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||557|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||2965|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||2821|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||226|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-116C>T||||||
1	745785	.	G	A	291.64	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||244|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||244|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||3946|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||3091|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||676|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||3084|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||2940|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||345|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-235C>T||||||
1	745817	.	G	C	161.95	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>G|||||276|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>G|||||276|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>C|||||3978|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>C|||||3123|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>C|||||708|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>C|||||3116|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>C|||||2972|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>C|||||377|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-267C>G||||||
1	745840	.	T	A	216.2	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>T|||||299|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>T|||||299|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>A|||||4001|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>A|||||3146|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>A|||||731|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>A|||||3139|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>A|||||2995|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>A|||||400|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-290A>T||||||
1	745918	.	G	A	31.51	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||377|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||377|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||4079|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||3224|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||809|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||3217|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||3073|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||478|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-368C>T||||||
1	746035	.	C	A	351.81	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>T|||||494|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>T|||||494|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>A|||||4196|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>A|||||3341|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>A|||||926|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>A|||||3334|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>A|||||3190|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>A|||||595|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-485G>T||||||
1	746189	.	A	G	8160.22	.	AC=129;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||648|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||648|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||4350|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||3495|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||1080|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||3488|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||3344|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||749|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-639T>C||||||
1	746350	rs2722511	A	G	514.18	.	AC=33;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||809|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||809|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||4511|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||3656|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||1241|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||3649|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||3505|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||910|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-800T>C||||||
1	746368	rs3925106	C	A	11932.28	.	AC=234;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>T|||||827|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>T|||||827|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>A|||||4529|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>A|||||3674|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>A|||||1259|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>A|||||3667|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>A|||||3523|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>A|||||928|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-818G>T||||||
1	746394	rs3925105	G	A	2944.15	.	AC=152;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||853|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||853|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||4555|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||3700|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||1285|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||3693|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||3549|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||954|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-844C>T||||||
1	746400	rs4040664	C	T	49.0	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||859|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||859|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>T|||||4561|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||3706|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||1291|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||3699|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||3555|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||960|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-850G>A||||||
1	746417	.	A	G	86.93	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||876|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||876|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||4578|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||3723|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||1308|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||3716|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||3572|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||977|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-867T>C||||||
1	746423	rs2722510	T	C	1353.33	.	AC=52;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||882|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||882|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693T>C|||||4584|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||3729|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||1314|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||3722|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||3578|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||983|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-873A>G||||||
1	746446	rs2722509	C	G	123.31	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>C|||||905|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>C|||||905|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693C>G|||||4607|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>G|||||3752|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>G|||||1337|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>G|||||3745|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>G|||||3601|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>G|||||1006|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-896G>C||||||
1	746522	rs28616077	A	G	70.22	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||981|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||981|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||4683|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||3828|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||1413|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||3821|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||3677|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||1082|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-972T>C||||||
1	746727	.	G	A	975.36	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1186|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1186|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>A|||||4888|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4033|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||1618|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4026|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||3882|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1287|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1177C>T||||||
1	746775	.	A	G	248.44	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||1234|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||1234|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693A>G|||||4936|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||4081|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||1666|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||4074|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||3930|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||1335|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1225T>C||||||
1	746792	.	G	C	43.9	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>G|||||1251|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>G|||||1251|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000593022|lincRNA||n.*693G>C|||||4953|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>C|||||4098|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>C|||||1683|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>C|||||4091|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>C|||||3947|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>C|||||1352|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1242C>G||||||
1	746864	.	G	A	50.13	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1323|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1323|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4170|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||1755|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4163|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4019|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1424|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1314C>T||||||
1	746892	.	G	A	172.2	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1351|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1351|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4198|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||1783|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4191|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4047|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1452|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1342C>T||||||
1	746897	.	C	T	362.01	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||1356|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||1356|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||4203|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||1788|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||4196|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||4052|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||1457|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1347G>A||||||
1	746898	.	G	A	34.13	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1357|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1357|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4204|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||1789|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4197|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4053|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1458|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1348C>T||||||
1	746916	.	G	A	7079.0	.	AC=116;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1375|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1375|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4222|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||1807|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4215|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4071|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1476|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1366C>T||||||
1	747040	.	G	T	255.48	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>A|||||1499|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>A|||||1499|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>T|||||4346|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>T|||||1931|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>T|||||4339|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>T|||||4195|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>T|||||1600|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1490C>A||||||
1	747113	.	C	T	163.71	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||1572|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||1572|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||4419|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||2004|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||4412|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||4268|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||1673|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1563G>A||||||
1	747155	.	G	A	99.24	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1614|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1614|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4461|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2046|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4454|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4310|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1715|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1605C>T||||||
1	747189	.	G	A	38.66	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1648|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1648|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4495|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2080|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4488|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4344|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1749|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1639C>T||||||
1	747252	.	A	G	4.25	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||1711|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||1711|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||4558|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||2143|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||4551|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||4407|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||1812|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1702T>C||||||
1	747298	.	C	T	2684.28	.	AC=113;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||1757|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||1757|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||4604|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||2189|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||4597|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||4453|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||1858|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1748G>A||||||
1	747348	.	T	C	807.0	.	AC=64;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||1807|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||1807|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||4654|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||2239|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||4647|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||4503|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||1908|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1798A>G||||||
1	747408	.	G	A	1095.1	.	AC=62;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||1867|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||1867|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4714|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2299|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4707|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4563|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||1968|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1858C>T||||||
1	747516	rs2519046	T	C	670.69	.	AC=46;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||1975|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||1975|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714T>C|||||4822|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||2407|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040T>C|||||4815|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||4671|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||2076|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-1966A>G||||||
1	747575	rs2977631	A	G	199.32	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||2034|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||2034|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714A>G|||||4881|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||2466|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040A>G|||||4874|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||4730|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||2135|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2025T>C||||||
1	747588	.	C	T	136.48	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||2047|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||2047|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||4894|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||2479|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||4887|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||4743|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||2148|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2038G>A||||||
1	747593	rs2519045	C	G	129.0	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>C|||||2052|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>C|||||2052|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>G|||||4899|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>G|||||2484|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>G|||||4892|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>G|||||4748|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>G|||||2153|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2043G>C||||||
1	747617	.	G	A	130.6	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2076|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2076|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714G>A|||||4923|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2508|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040G>A|||||4916|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4772|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2177|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2067C>T||||||
1	747660	.	C	T	254.38	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||2119|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||2119|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000589531|lincRNA||n.*714C>T|||||4966|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||2551|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000586288|lincRNA||n.*1040C>T|||||4959|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417C>T|||||4815|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||2220|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2110G>A||||||
1	747720	rs115624286	A	G	18335.66	.	AC=291;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||2179|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||2179|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||2611|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417A>G|||||4875|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||2280|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2170T>C||||||
1	747752	.	G	A	971.22	.	AC=69;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2211|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4999|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2211|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2643|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4907|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2312|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2202C>T||||||
1	747764	.	T	C	2048.74	.	AC=48;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||2223|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4987|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||2223|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||2655|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417T>C|||||4919|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||2324|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2214A>G||||||
1	747779	.	G	A	663.97	.	AC=41;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2238|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4972|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2238|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2670|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>A|||||4934|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2339|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2229C>T||||||
1	747794	rs2427895	G	C	406.72	.	AC=45;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>G|||||2253|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||4957|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>G|||||2253|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>C|||||2685|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000443772|lincRNA||n.*417G>C|||||4949|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>C|||||2354|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2244C>G||||||
1	747848	.	G	A	16.92	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2307|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4903|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2307|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2739|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2408|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2298C>T||||||
1	747871	.	T	G	83.5	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>C|||||2330|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>G|||||4880|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>C|||||2330|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>G|||||2762|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>G|||||2431|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2321A>C||||||
1	747874	.	A	G	147.81	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||2333|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||4877|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||2333|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||2765|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||2434|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2324T>C||||||
1	747892	.	G	A	36.43	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2351|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4859|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2351|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2783|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2452|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2342C>T||||||
1	747917	.	A	G	493.63	.	AC=45;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||2376|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||4834|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||2376|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||2808|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||2477|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2367T>C||||||
1	747966	.	G	A	508.55	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2425|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4785|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2425|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||2857|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2526|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2416C>T||||||
1	748024	.	T	C	1170.21	.	AC=46;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||2483|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4727|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||2483|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||2915|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||2584|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2474A>G||||||
1	748061	.	T	A	1935.28	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>T|||||2520|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||4690|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>T|||||2520|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>A|||||2952|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>A|||||2621|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2511A>T||||||
1	748066	.	T	C	152.48	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||2525|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4685|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||2525|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||2957|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||2626|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2516A>G||||||
1	748085	.	C	T	901.32	.	AC=69;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||2544|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||4666|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||2544|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||2976|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||2645|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2535G>A||||||
1	748141	rs2427893	G	A	1151.54	.	AC=47;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2600|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4610|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2600|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||3032|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2701|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2591C>T||||||
1	748253	.	G	T	167.95	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>A|||||2712|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>T|||||4498|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>A|||||2712|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>T|||||3144|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>T|||||2813|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2703C>A||||||
1	748279	rs12184331	A	T	2916.63	.	AC=105;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>A|||||2738|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>T|||||4472|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>A|||||2738|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>T|||||3170|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>T|||||2839|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2729T>A||||||
1	748305	.	A	G	146.89	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||2764|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||4446|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||2764|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||3196|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||2865|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2755T>C||||||
1	748332	.	T	C	104.13	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||2791|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4419|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||2791|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||3223|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||2892|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2782A>G||||||
1	748355	.	A	T	19.41	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>A|||||2814|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>T|||||4396|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>A|||||2814|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>T|||||3246|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>T|||||2915|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2805T>A||||||
1	748366	.	T	G	32.65	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>C|||||2825|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>G|||||4385|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>C|||||2825|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>G|||||3257|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>G|||||2926|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2816A>C||||||
1	748384	.	G	A	288.29	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2843|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4367|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2843|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||3275|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||2944|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2834C>T||||||
1	748445	.	T	C	568.24	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||2904|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4306|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||2904|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||3336|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||3005|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2895A>G||||||
1	748446	.	G	A	461.67	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2905|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4305|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2905|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||3337|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||3006|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2896C>T||||||
1	748462	.	G	C	73.39	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>G|||||2921|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||4289|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>G|||||2921|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>C|||||3353|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>C|||||3022|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2912C>G||||||
1	748487	.	T	C	383.56	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||2946|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4264|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||2946|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||3378|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||3047|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2937A>G||||||
1	748503	.	T	C	107.53	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||2962|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4248|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||2962|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||3394|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||3063|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2953A>G||||||
1	748509	.	G	A	166.14	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||2968|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||4242|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||2968|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||3400|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||3069|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2959C>T||||||
1	748524	.	C	T	301.04	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||2983|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||4227|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||2983|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||3415|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3084|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2974G>A||||||
1	748544	.	C	T	915.64	.	AC=42;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3003|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||4207|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3003|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||3435|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3104|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-2994G>A||||||
1	748618	.	C	T	297.35	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3077|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||4133|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3077|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||3509|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3178|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3068G>A||||||
1	748645	.	T	C	67.6	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||3104|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||4106|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||3104|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||3536|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||3205|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3095A>G||||||
1	748660	.	T	A	161.8	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>T|||||3119|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||4091|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>T|||||3119|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>A|||||3551|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>A|||||3220|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3110A>T||||||
1	748707	.	G	T	113.35	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>A|||||3166|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>T|||||4044|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>A|||||3166|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>T|||||3598|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>T|||||3267|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3157C>A||||||
1	748765	.	G	A	209.18	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||3224|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3986|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||3224|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||3656|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||3325|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3215C>T||||||
1	748791	.	A	T	1038.34	.	AC=54;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>A|||||3250|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>T|||||3960|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>A|||||3250|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>T|||||3682|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>T|||||3351|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3241T>A||||||
1	748798	.	A	G	254.03	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||3257|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||3953|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||3257|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||3689|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||3358|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3248T>C||||||
1	748810	.	G	A	274.37	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||3269|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3941|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||3269|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||3701|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||3370|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3260C>T||||||
1	748822	.	C	T	286.2	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3281|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3929|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3281|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||3713|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3382|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3272G>A||||||
1	748875	.	C	T	801.33	.	AC=43;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3334|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3876|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3334|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||3766|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3435|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3325G>A||||||
1	748878	.	G	T	26885.67	.	AC=586;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>A|||||3337|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>T|||||3873|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>A|||||3337|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>T|||||3769|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>T|||||3438|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3328C>A||||||
1	748945	.	T	A	337.35	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>T|||||3404|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||3806|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>T|||||3404|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>A|||||3836|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>A|||||3505|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3395A>T||||||
1	748979	.	C	T	565.6	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3438|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3772|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3438|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||3870|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3539|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3429G>A||||||
1	749130	.	G	A	130.18	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||3589|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3621|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||3589|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4021|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||3690|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.341-3580C>T||||||
1	749173	.	C	T	42.92	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3632|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3578|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3632|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4064|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3733|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3580G>A||||||
1	749215	.	C	T	63.33	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3674|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3536|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3674|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4106|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3775|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3538G>A||||||
1	749265	.	G	A	929.64	.	AC=69;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||3724|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3486|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||3724|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4156|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||3825|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3488C>T||||||
1	749267	.	T	G	341.14	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>C|||||3726|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>G|||||3484|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>C|||||3726|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>G|||||4158|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>G|||||3827|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3486A>C||||||
1	749290	.	G	A	222.17	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||3749|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3461|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||3749|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4181|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||3850|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3463C>T||||||
1	749358	.	C	T	279.98	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3817|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3393|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3817|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4249|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3918|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3395G>A||||||
1	749396	.	T	G	2290.75	.	AC=87;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>C|||||3855|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>G|||||3355|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>C|||||3855|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>G|||||4287|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>G|||||3956|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3357A>C||||||
1	749413	.	C	T	973.76	.	AC=61;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3872|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3338|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3872|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4304|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||3973|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3340G>A||||||
1	749422	.	T	G	181.05	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>C|||||3881|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>G|||||3329|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>C|||||3881|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>G|||||4313|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>G|||||3982|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3331A>C||||||
1	749456	.	T	C	231.41	.	AC=24;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||3915|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||3295|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||3915|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||4347|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||4016|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3297A>G||||||
1	749504	.	A	C	142.35	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>G|||||3963|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||3247|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>G|||||3963|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>C|||||4395|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>C|||||4064|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3249T>G||||||
1	749517	.	C	T	1470.28	.	AC=71;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||3976|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3234|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||3976|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4408|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4077|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3236G>A||||||
1	749544	.	G	A	207.01	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4003|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3207|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4003|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4435|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4104|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3209C>T||||||
1	749564	.	A	C	535.1	.	AC=36;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>G|||||4023|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||3187|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>G|||||4023|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>C|||||4455|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>C|||||4124|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3189T>G||||||
1	749592	rs4606254	G	A	6338.96	.	AC=134;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4051|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3159|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4051|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4483|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4152|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3161C>T||||||
1	749602	.	C	T	141.03	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4061|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||3149|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4061|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4493|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4162|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3151G>A||||||
1	749641	rs4350141	C	G	62.26	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>C|||||4100|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>G|||||3110|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>C|||||4100|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>G|||||4532|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>G|||||4201|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3112G>C||||||
1	749644	rs75909375	T	C	2465.04	.	AC=112;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||4103|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||3107|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||4103|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||4535|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||4204|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3109A>G||||||
1	749683	.	C	G	2832.22	.	AC=135;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>C|||||4142|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>G|||||3068|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>C|||||4142|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>G|||||4574|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>G|||||4243|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3070G>C||||||
1	749689	rs75448039	T	G	841.56	.	AC=48;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>C|||||4148|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>G|||||3062|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>C|||||4148|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>G|||||4580|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>G|||||4249|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3064A>C||||||
1	749707	.	A	G	991.09	.	AC=54;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||4166|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||3044|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||4166|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||4598|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||4267|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3046T>C||||||
1	749720	.	A	G	431.08	.	AC=37;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||4179|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||3031|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||4179|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||4611|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||4280|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3033T>C||||||
1	749743	rs4387126	G	A	36.9	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4202|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||3008|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4202|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4634|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4303|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+3010C>T||||||
1	749758	rs4399101	C	T	406.01	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4217|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2993|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4217|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4649|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4318|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2995G>A||||||
1	749760	rs12045157	C	G	396.11	.	AC=29;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>C|||||4219|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>G|||||2991|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>C|||||4219|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>G|||||4651|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>G|||||4320|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2993G>C||||||
1	749856	rs12409679	C	T	22729.1	.	AC=571;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4315|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2895|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4315|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4747|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4416|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2897G>A||||||
1	749857	.	G	A	957.34	.	AC=47;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4316|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2894|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4316|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4748|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4417|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2896C>T||||||
1	749899	.	G	A	218.27	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4358|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2852|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4358|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4790|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4459|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2854C>T||||||
1	749989	rs12409693	C	T	1752.75	.	AC=110;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4448|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2762|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4448|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4880|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4549|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2764G>A||||||
1	749997	rs12410209	A	G	1351.47	.	AC=85;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||4456|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||2754|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||4456|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>G|||||4888|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||4557|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2756T>C||||||
1	750013	rs12409695	C	T	6488.67	.	AC=202;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4472|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2738|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4472|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607C>T|||||4904|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4573|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2740G>A||||||
1	750053	rs11240770	A	C	8642.14	.	AC=288;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>G|||||4512|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||2698|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>G|||||4512|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607A>C|||||4944|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>C|||||4613|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2700T>G||||||
1	750055	rs11240771	T	C	1752.61	.	AC=79;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||4514|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||2696|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||4514|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||4946|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||4615|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2698A>G||||||
1	750059	.	T	C	52.73	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||4518|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||2692|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||4518|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607T>C|||||4950|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||4619|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2694A>G||||||
1	750084	.	G	A	1015.28	.	AC=55;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4543|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2667|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4543|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000588951|lincRNA||n.*607G>A|||||4975|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4644|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2669C>T||||||
1	750113	rs12184340	A	T	97.83	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>A|||||4572|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>T|||||2638|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>A|||||4572|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>T|||||4673|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2640T>A||||||
1	750115	.	C	T	101.61	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4574|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2636|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4574|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4675|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2638G>A||||||
1	750117	rs12184341	A	T	49.44	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>A|||||4576|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>T|||||2634|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>A|||||4576|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>T|||||4677|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2636T>A||||||
1	750138	rs61770171	G	A	2293.04	.	AC=109;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4597|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2613|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4597|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4698|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2615C>T||||||
1	750153	.	T	C	1180.43	.	AC=65;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||4612|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||2598|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||4612|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||4713|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2600A>G||||||
1	750190	.	C	T	429.63	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4649|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2561|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4649|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4750|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2563G>A||||||
1	750223	.	T	C	772.28	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1A>G|||||4682|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||2528|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1A>G|||||4682|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581T>C|||||4783|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2530A>G||||||
1	750230	.	G	C	110.47	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>G|||||4689|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||2521|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>G|||||4689|,C|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>C|||||4790|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2523C>G||||||
1	750235	.	G	A	825.59	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4694|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2516|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4694|,A|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581G>A|||||4795|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2518C>T||||||
1	750296	.	A	G	58.69	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1T>C|||||4755|,G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||2455|,G|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1T>C|||||4755|,G|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581A>G|||||4856|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2457T>C||||||
1	750342	.	C	T	2998.69	.	AC=148;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4801|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2409|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4801|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4902|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2411G>A||||||
1	750436	.	C	T	1238.37	.	AC=71;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4895|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2315|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4895|,T|downstream_gene_variant|MODIFIER|RP11-206L10.9|ENSG00000237491|transcript|ENST00000412115|lincRNA||n.*581C>T|||||4996|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2317G>A||||||
1	750504	.	C	T	92.16	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1G>A|||||4963|,T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2247|,T|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1G>A|||||4963|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2249G>A||||||
1	750511	.	G	A	277.07	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>T|||||4970|,A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2240|,A|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>T|||||4970|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2242C>T||||||
1	750524	.	G	C	37.62	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000447500|processed_transcript||n.-1C>G|||||4983|,C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||2227|,C|upstream_gene_variant|MODIFIER|RP11-206L10.8|ENSG00000230092|transcript|ENST00000590817|transcribed_unprocessed_pseudogene||n.-1C>G|||||4983|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2229C>G||||||
1	750573	.	T	C	385.01	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||2178|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2180A>G||||||
1	750594	.	A	C	139.0	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||2157|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2159T>G||||||
1	750611	.	T	C	8.47	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||2140|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2142A>G||||||
1	750655	.	C	T	224.53	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||2096|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2098G>A||||||
1	750675	.	G	A	5520.03	.	AC=82;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2076|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2078C>T||||||
1	750718	.	G	A	1324.04	.	AC=55;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||2033|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+2035C>T||||||
1	750783	.	G	A	46.17	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||1968|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1970C>T||||||
1	750799	.	G	A	196.13	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||1952|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1954C>T||||||
1	750809	.	G	C	20.35	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||1942|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1944C>G||||||
1	750897	.	G	A	1087.74	.	AC=47;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||1854|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1856C>T||||||
1	750946	.	A	G	273.2	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||1805|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1807T>C||||||
1	751043	.	G	A	36.49	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||1708|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1710C>T||||||
1	751251	.	A	C	498.37	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||1500|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1502T>G||||||
1	751281	.	T	C	348.68	.	AC=24;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||1470|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1472A>G||||||
1	751343	.	T	A	5525.54	.	AC=126;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||1408|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1410A>T||||||
1	751374	.	A	T	97.13	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>T|||||1377|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1379T>A||||||
1	751448	.	G	T	373.08	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>T|||||1303|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1305C>A||||||
1	751456	.	T	C	311.25	.	AC=24;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||1295|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1297A>G||||||
1	751485	.	T	A	539.84	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||1266|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1268A>T||||||
1	751533	.	T	C	512.15	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||1218|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1220A>G||||||
1	751565	.	A	G	284.47	.	AC=27;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||1186|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1188T>C||||||
1	751574	.	G	C	169.79	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||1177|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1179C>G||||||
1	751580	.	C	T	1371.47	.	AC=69;ANN=T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>T|||||1171|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1173G>A||||||
1	751599	.	T	C	385.93	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||1152|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1154A>G||||||
1	751622	rs77445489	G	T	466.75	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>T|||||1129|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1131C>A||||||
1	751634	.	A	C	126.4	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||1117|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1119T>G||||||
1	751654	.	G	A	512.64	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||1097|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1099C>T||||||
1	751695	.	A	G	124.61	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||1056|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1058T>C||||||
1	751729	.	G	A	471.52	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||1022|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1024C>T||||||
1	751735	.	G	T	52.61	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>T|||||1016|,T|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1018C>A||||||
1	751756	.	T	C	11133.69	.	AC=225;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||995|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+997A>G||||||
1	751763	.	T	A	42.63	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||988|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+990A>T||||||
1	751831	.	T	C	23.17	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||920|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+922A>G||||||
1	751832	.	T	C	203.95	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||919|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+921A>G||||||
1	751925	.	T	A	262.77	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||826|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+828A>T||||||
1	752016	.	G	C	135.26	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||735|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+737C>G||||||
1	752051	.	G	A	101.35	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||700|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+702C>T||||||
1	752073	.	A	C	25.52	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||678|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+680T>G||||||
1	752098	.	G	C	503.57	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||653|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+655C>G||||||
1	752132	.	T	C	113.4	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||619|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+621A>G||||||
1	752134	.	C	A	220.53	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>A|||||617|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+619G>T||||||
1	752183	.	T	C	899.44	.	AC=40;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>C|||||568|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+570A>G||||||
1	752242	rs12090487	T	A	6835.32	.	AC=87;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||509|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+511A>T||||||
1	752270	.	T	A	128.38	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||481|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+483A>T||||||
1	752284	.	A	C	765.26	.	AC=49;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||467|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+469T>G||||||
1	752313	.	G	A	305.69	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||438|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+440C>T||||||
1	752357	.	C	G	294.1	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>G|||||394|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+396G>C||||||
1	752387	.	A	C	658.97	.	AC=50;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>C|||||364|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+366T>G||||||
1	752398	.	T	A	278.67	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>A|||||353|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+355A>T||||||
1	752437	.	G	C	68.6	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>C|||||314|,C|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+316C>G||||||
1	752478	.	G	A	1200.31	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||273|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+275C>T||||||
1	752505	.	A	G	494.17	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||246|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+248T>C||||||
1	752566	rs3094315	G	A	80265.72	.	AC=914;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1G>A|||||185|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+187C>T||||||
1	752593	rs114297979	T	G	1491.72	.	AC=56;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1T>G|||||158|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+160A>C||||||
1	752617	.	C	A	1266.98	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1C>A|||||134|,A|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+136G>T||||||
1	752623	.	A	G	168.35	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||128|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+130T>C||||||
1	752721	rs3131972	A	G	73093.59	.	AC=854;ANN=G|upstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.-1A>G|||||30|,G|intron_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+32T>C||||||
1	752752	.	C	T	184.36	.	AC=3;ANN=T|splice_donor_variant&intron_variant|HIGH|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/1|n.340+1G>A||||||,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.2C>T||||||
1	752796	.	C	T	1670.77	.	AC=51;ANN=T|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/2|n.297G>A||||||,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.46C>T||||||
1	752894	rs3131971	T	C	8555.8	.	AC=344;ANN=C|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/2|n.199A>G||||||,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.144T>C||||||
1	752918	.	G	T	16.27	.	AC=1;ANN=T|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/2|n.175C>A||||||,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.168G>T||||||
1	752973	.	T	A	59.22	.	AC=1;ANN=A|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/2|n.120A>T||||||,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.223T>A||||||
1	752996	.	T	C	25.37	.	AC=1;ANN=C|non_coding_exon_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript|1/2|n.97A>G||||||,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.246T>C||||||
1	753110	.	G	A	164.75	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||18|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.360G>A||||||
1	753269	rs61770172	C	G	21738.53	.	AC=695;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||177|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.519C>G||||||
1	753338	.	A	G	112.42	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||246|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.588A>G||||||
1	753379	.	C	A	52.82	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||287|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.629C>A||||||
1	753405	rs61770173	C	A	7970.54	.	AC=327;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||313|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.655C>A||||||
1	753425	rs3131970	T	C	5267.94	.	AC=219;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||333|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.675T>C||||||
1	753461	.	C	T	604.97	.	AC=41;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||369|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.711C>T||||||
1	753474	rs2073814	C	G	18030.71	.	AC=546;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||382|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.724C>G||||||
1	753492	.	G	A	633.89	.	AC=38;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||400|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.742G>A||||||
1	753507	.	C	T	13.58	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||415|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.757C>T||||||
1	753538	.	G	A	49.5	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||446|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.788G>A||||||
1	753541	rs2073813	G	A	21040.1	.	AC=305;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||449|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/2|n.791G>A||||||
1	753608	.	T	A	671.51	.	AC=41;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>T|||||516|,A|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.832+26T>A||||||
1	753689	.	G	A	155.43	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||597|,A|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.832+107G>A||||||
1	753699	.	C	T	63.34	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||607|,T|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.832+117C>T||||||
1	753724	.	G	A	500.61	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||632|,A|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.832+142G>A||||||
1	753849	rs58324164	G	T	2033.9	.	AC=99;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||757|,T|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.833-254G>T||||||
1	753865	rs72888821	G	C	2150.27	.	AC=78;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||773|,C|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.833-238G>C||||||
1	753976	rs61768165	G	A	1047.47	.	AC=65;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||884|,A|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.833-127G>A||||||
1	753982	.	A	C	835.77	.	AC=57;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||890|,C|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.833-121A>C||||||
1	754049	.	G	C	816.17	.	AC=44;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||957|,C|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.833-54G>C||||||
1	754063	rs12184312	G	T	739.01	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||971|,T|intron_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|1/1|n.833-40G>T||||||
1	754105	rs12184325	C	T	673.74	.	AC=29;ANN=T|splice_region_variant&non_coding_exon_variant|LOW|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.835C>T||||||,T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||1013|
1	754121	rs12184335	T	G	351.06	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||1029|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.851T>G||||||
1	754163	rs12184336	T	C	281.13	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||1071|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.893T>C||||||
1	754175	.	G	A	27.37	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1083|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.905G>A||||||
1	754182	rs3131969	A	G	31723.68	.	AC=752;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||1090|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.912A>G||||||
1	754192	rs3131968	A	G	34092.49	.	AC=769;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||1100|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.922A>G||||||
1	754198	.	A	G	137.11	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||1106|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.928A>G||||||
1	754211	rs12184313	G	A	1186.13	.	AC=41;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1119|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.941G>A||||||
1	754228	.	T	G	232.77	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||1136|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.958T>G||||||
1	754247	.	G	A	103.81	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1155|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.977G>A||||||
1	754334	rs3131967	T	C	65844.31	.	AC=857;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||1242|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1064T>C||||||
1	754345	.	C	A	191.85	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||1253|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1075C>A||||||
1	754382	.	C	T	135.45	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||1290|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1112C>T||||||
1	754391	.	C	T	90.25	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||1299|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1121C>T||||||
1	754396	rs115791529	T	C	667.17	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||1304|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1126T>C||||||
1	754429	rs114339855	T	G	697.87	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||1337|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1159T>G||||||
1	754433	.	G	A	270.28	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1341|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1163G>A||||||
1	754444	.	C	G	63.98	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||1352|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1174C>G||||||
1	754458	.	G	T	185.42	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||1366|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1188G>T||||||
1	754463	.	G	A	68.76	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1371|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1193G>A||||||
1	754503	rs3115859	G	A	53883.23	.	AC=819;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1411|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1233G>A||||||
1	754510	.	G	A	287.86	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1418|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1240G>A||||||
1	754567	.	C	T	130.46	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||1475|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1297C>T||||||
1	754580	.	G	A	15.9	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1488|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1310G>A||||||
1	754597	.	C	T	39.66	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||1505|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1327C>T||||||
1	754604	.	C	G	66.3	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||1512|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1334C>G||||||
1	754629	rs10454459	A	G	1099.59	.	AC=36;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||1537|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1359A>G||||||
1	754632	.	G	A	136.04	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1540|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1362G>A||||||
1	754671	rs10454460	A	G	941.09	.	AC=56;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||1579|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1401A>G||||||
1	754744	.	G	A	50.34	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1652|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1474G>A||||||
1	754745	rs6688224	C	T	262.11	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||1653|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1475C>T||||||
1	754758	.	C	G	749.29	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||1666|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1488C>G||||||
1	754761	.	T	C	362.98	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||1669|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1491T>C||||||
1	754776	.	T	C	41.21	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||1684|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1506T>C||||||
1	754835	.	T	C	127.41	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||1743|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1565T>C||||||
1	754861	rs10454461	T	G	315.97	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||1769|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1591T>G||||||
1	754869	.	G	A	303.27	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1777|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1599G>A||||||
1	754894	.	G	A	109.97	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1802|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1624G>A||||||
1	754954	rs10454454	G	A	453.14	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1862|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1684G>A||||||
1	754964	rs3131966	C	T	46689.67	.	AC=780;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||1872|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1694C>T||||||
1	754989	.	G	C	486.65	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||1897|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1719G>C||||||
1	755005	.	G	A	516.23	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||1913|,A|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1735G>A||||||
1	755059	.	A	G	467.04	.	AC=34;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||1967|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1789A>G||||||
1	755135	rs10454455	A	G	1357.75	.	AC=46;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||2043|,G|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1865A>G||||||
1	755156	.	C	T	512.19	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2064|,T|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1886C>T||||||
1	755162	.	T	C	134.38	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||2070|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1892T>C||||||
1	755181	.	G	C	327.71	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||2089|,C|non_coding_exon_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1911G>C||||||
1	755212	rs10454456	G	T	58.01	.	AC=8;ANN=T|splice_region_variant&non_coding_exon_variant|LOW|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA|2/2|n.1942G>T||||||,T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||2120|
1	755225	.	T	G	40.29	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||2133|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||11|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755228	.	T	G	266.26	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||2136|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||14|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755240	.	T	G	417.09	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||2148|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||26|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755254	.	G	A	88.47	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2162|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||40|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755274	rs78408995	C	T	9297.56	.	AC=91;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2182|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||60|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755348	.	T	A	273.65	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>T|||||2256|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||134|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755361	.	T	G	107.94	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||2269|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||147|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755364	.	G	C	968.5	.	AC=27;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||2272|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||150|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755426	.	C	T	1756.84	.	AC=36;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2334|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||212|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755435	.	T	G	179.8	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||2343|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||221|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755448	rs2977620	A	C	175.05	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||2356|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||234|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755451	.	A	C	1573.86	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||2359|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||237|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755459	.	C	T	298.42	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2367|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||245|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755477	.	C	T	87.3	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2385|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||263|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755479	rs114136640	G	A	385.97	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2387|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||265|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755486	.	A	C	36.67	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||2394|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||272|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755523	.	C	T	243.48	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2431|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||309|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755541	.	G	A	614.59	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2449|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||327|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755584	.	G	C	1321.53	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||2492|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||370|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755594	.	A	G	1299.05	.	AC=34;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||2502|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||380|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755609	.	T	C	799.83	.	AC=27;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||2517|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||395|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755656	.	A	T	849.06	.	AC=38;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>A|||||2564|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>T|||||442|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755673	.	A	G	544.38	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||2581|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||459|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755728	.	C	T	837.09	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2636|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||514|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755774	.	C	T	700.27	.	AC=30;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2682|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||560|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755775	rs3131965	A	G	39469.49	.	AC=689;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||2683|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||561|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755779	.	C	G	71.42	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||2687|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||565|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755787	.	T	A	71.53	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>T|||||2695|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||573|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755809	.	C	T	26.36	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2717|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||595|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755823	rs115288280	T	C	1416.33	.	AC=40;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||2731|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||609|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755852	.	G	A	491.79	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2760|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||638|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755857	.	G	A	519.76	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2765|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||643|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755868	rs75492222	C	T	5595.01	.	AC=88;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2776|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||654|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755869	.	G	A	274.83	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2777|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||655|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755887	rs3131964	C	G	62393.1	.	AC=875;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||2795|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||673|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755890	rs3115858	A	T	54484.03	.	AC=719;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>A|||||2798|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>T|||||676|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755904	.	G	A	2193.77	.	AC=83;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2812|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||690|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755931	.	G	A	166.52	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||2839|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||717|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755936	.	T	G	261.15	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||2844|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||722|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755940	rs3115857	C	T	57198.08	.	AC=544;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2848|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||726|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755941	.	G	C	101.46	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||2849|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||727|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755944	.	A	G	39.42	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||2852|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||730|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755949	.	C	T	64.12	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2857|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||735|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755963	.	C	A	149.51	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||2871|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||749|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	755982	rs114491737	A	T	26045.47	.	AC=304;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>A|||||2890|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>T|||||768|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756011	rs115869595	A	C	11744.86	.	AC=145;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||2919|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||797|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756014	.	G	T	80.94	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||2922|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>T|||||800|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756042	rs114510110	G	C	12527.42	.	AC=208;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||2950|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||828|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756046	rs115313902	C	T	1351.27	.	AC=71;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||2954|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||832|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756063	rs115851292	A	C	14971.1	.	AC=232;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||2971|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||849|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756095	rs114481542	C	G	1018.77	.	AC=32;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||3003|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||881|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756106	.	A	G	1807.69	.	AC=111;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||3014|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||892|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756138	.	A	C	730.43	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||3046|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||924|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756146	.	A	T	448.6	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>A|||||3054|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>T|||||932|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756150	.	C	T	227.98	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||3058|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||936|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756166	rs115569236	A	T	615.06	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>A|||||3074|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>T|||||952|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756220	.	T	C	1361.53	.	AC=76;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||3128|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||1006|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756226	.	C	A	88.22	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||3134|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||1012|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756228	rs56189941	T	A	1730.6	.	AC=100;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>T|||||3136|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||1014|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756257	rs114221781	A	C	10286.08	.	AC=195;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||3165|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||1043|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756268	rs12567639	G	A	50405.45	.	AC=569;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3176|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1054|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756273	.	C	A	496.81	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||3181|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||1059|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756277	.	G	T	2433.45	.	AC=104;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||3185|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>T|||||1063|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756304	rs11240772	C	G	1563.25	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||3212|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||1090|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756309	rs61768167	T	C	9063.02	.	AC=170;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||3217|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||1095|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756320	rs61768169	G	A	7222.96	.	AC=138;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3228|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1106|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756329	.	G	A	89.73	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3237|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1115|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756334	.	C	T	2544.38	.	AC=127;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||3242|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||1120|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756342	.	G	A	626.71	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3250|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1128|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756380	rs3131963	T	A	79305.45	.	AC=769;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>T|||||3288|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||1166|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756387	.	T	C	1064.41	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||3295|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||1173|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756391	rs114549468	T	C	7626.77	.	AC=44;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||3299|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||1177|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756404	rs115508564	C	T	88.08	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||3312|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||1190|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756433	.	T	G	478.44	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||3341|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||1219|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756434	rs61768170	G	C	18264.85	.	AC=179;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||3342|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||1220|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756451	.	G	C	177.0	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||3359|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||1237|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756467	rs80217098	C	T	7603.97	.	AC=100;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||3375|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||1253|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756479	rs61768171	C	A	7764.37	.	AC=109;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||3387|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||1265|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756483	.	C	A	91.16	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||3391|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||1269|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756495	.	G	A	444.11	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3403|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1281|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756519	.	G	C	468.34	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||3427|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||1305|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756533	.	C	T	76.0	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||3441|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||1319|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756534	.	G	A	37.29	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3442|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1320|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756604	rs3131962	A	G	59559.43	.	AC=800;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||3512|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||1390|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||4982|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||4985|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756641	rs115040647	G	T	459.67	.	AC=39;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||3549|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>T|||||1427|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>A|||||4945|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>A|||||4948|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756652	rs113960458	T	G	184.52	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>C|||||3560|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>G|||||1438|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>C|||||4934|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>C|||||4937|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756684	.	C	T	136.61	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||3592|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||1470|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||4902|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||4905|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756714	rs68160426	G	A	380.99	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3622|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1500|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||4872|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||4875|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756781	rs75189095	G	A	7076.34	.	AC=92;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3689|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1567|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||4805|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||4808|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756786	rs116028335	C	A	1977.02	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||3694|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||1572|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||4800|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||4803|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756838	rs77239421	C	G	2428.79	.	AC=38;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||3746|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||1624|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||4748|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||4751|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756912	rs6699990	A	G	1222.54	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||3820|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||1698|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||4674|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||4677|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	756956	rs80302046	G	A	1407.2	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||3864|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||1742|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||4630|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||4633|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757103	rs76779543	C	T	6779.8	.	AC=94;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||4011|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||1889|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||4483|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||4486|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757120	rs77598327	A	G	7415.4	.	AC=97;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||4028|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||1906|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||4466|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||4469|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757328	.	C	T	89.6	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||4236|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||2114|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||4258|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||4261|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757394	rs115707978	C	T	275.61	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||4302|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||2180|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||4192|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||4195|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757494	.	G	C	270.25	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||4402|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||2280|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||4092|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||4095|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757640	rs3115853	G	A	81982.54	.	AC=860;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||4548|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||2426|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||3946|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||3949|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757677	.	G	A	49.03	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||4585|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||2463|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||3909|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||3912|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757691	rs74045212	T	C	2653.8	.	AC=54;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||4599|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||2477|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||3895|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||3898|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757717	.	G	A	18.1	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>T|||||4625|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||2503|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||3869|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||3872|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757734	rs4951929	C	T	100925.03	.	AC=931;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||4642|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||2520|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||3852|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||3855|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757786	.	C	T	44.93	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||4694|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||2572|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||3800|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||3803|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757791	rs12751535	C	G	40.39	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>C|||||4699|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||2577|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||3795|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||3798|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757842	rs12736368	G	C	2818.28	.	AC=116;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||4750|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||2628|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||3744|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||3747|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757843	rs11240773	C	A	7635.67	.	AC=184;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||4751|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||2629|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||3743|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||3746|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757848	.	C	T	908.58	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||4756|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||2634|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||3738|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||3741|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757869	rs11240774	T	C	849.44	.	AC=54;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>G|||||4777|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||2655|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||3717|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||3720|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757878	rs11240775	A	C	981.6	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>G|||||4786|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||2664|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>G|||||3708|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>G|||||3711|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	757936	rs4951862	C	A	85430.4	.	AC=887;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>T|||||4844|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||2722|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||3650|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||3653|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758021	.	G	T	957.43	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>A|||||4929|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||4967|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>T|||||2807|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>A|||||3565|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>A|||||3568|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758048	rs3131957	A	G	9878.22	.	AC=115;ANN=G|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1T>C|||||4956|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||4940|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||4993|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||4999|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||2834|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||3538|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||3541|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758064	.	G	C	264.66	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1C>G|||||4972|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||4924|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||4977|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||4983|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||4985|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||4989|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||2850|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||3522|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||3525|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758066	.	T	A	287.2	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1A>T|||||4974|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||4922|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||4975|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||4981|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||4983|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||4987|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||2852|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>T|||||3520|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>T|||||3523|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758085	.	C	T	117.0	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-206L10.10|ENSG00000240453|transcript|ENST00000435300|processed_transcript||n.-1G>A|||||4993|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4903|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4956|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4962|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4964|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4968|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4994|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4994|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||2871|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||3501|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||3504|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758093	.	T	C	984.55	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||4895|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4948|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4954|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4956|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4960|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4986|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4986|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||2879|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||3493|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||3496|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758119	.	A	C	420.34	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>C|||||4869|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>C|||||4922|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>C|||||4928|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>C|||||4930|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>C|||||4934|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>C|||||4960|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>C|||||4960|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||2905|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>G|||||3467|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>G|||||3470|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758132	.	C	T	149.52	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4856|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4909|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4915|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4917|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4921|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4947|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4947|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||2918|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||3454|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||3457|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758141	rs77042389	G	A	6852.69	.	AC=90;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||4847|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||4900|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||4906|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||4908|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||4912|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||4938|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||4938|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||2927|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||3445|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||3448|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758144	rs3131956	A	G	85713.97	.	AC=849;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||4844|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||4897|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||4903|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||4905|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||4909|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||4935|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||4935|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||2930|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||3442|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||3445|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758164	.	G	C	274.17	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||4824|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||4877|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||4883|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||4885|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||4889|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||4915|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||4915|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||2950|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||3422|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||3425|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758188	.	A	C	34.79	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>C|||||4800|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>C|||||4853|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>C|||||4859|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>C|||||4861|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>C|||||4865|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>C|||||4891|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>C|||||4891|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||2974|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>G|||||3398|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>G|||||3401|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758274	.	G	C	2162.29	.	AC=56;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||4714|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||4767|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||4773|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||4775|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||4779|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||4805|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||4805|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||3060|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||3312|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||3315|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758302	.	C	T	89.53	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4686|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4739|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4745|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4747|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4751|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4777|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4777|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3088|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||3284|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||3287|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758310	.	A	G	22.59	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||4678|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||4731|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||4737|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||4739|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||4743|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||4769|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||4769|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||3096|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||3276|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||3279|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758324	rs3131955	T	C	73828.77	.	AC=927;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||4664|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4717|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4723|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4725|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4729|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4755|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4755|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||3110|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||3262|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||3265|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758391	rs72888833	C	G	47.88	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||4597|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||4650|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||4656|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||4658|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||4662|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||4688|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||4688|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3177|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||3195|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||3198|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758412	.	C	T	554.94	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4576|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4629|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4635|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4637|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4641|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4667|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4667|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3198|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||3174|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||3177|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758415	.	G	A	56.05	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||4573|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||4626|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||4632|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||4634|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||4638|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||4664|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||4664|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||3201|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||3171|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||3174|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758426	rs72888834	C	G	27.02	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||4562|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||4615|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||4621|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||4623|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||4627|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||4653|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||4653|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3212|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||3160|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||3163|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758449	rs114769912	G	A	1474.32	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||4539|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||4592|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||4598|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||4600|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||4604|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||4630|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||4630|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||3235|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||3137|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||3140|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758508	.	A	C	34.63	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>C|||||4480|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>C|||||4533|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>C|||||4539|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>C|||||4541|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>C|||||4545|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>C|||||4571|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>C|||||4571|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||3294|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>G|||||3078|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>G|||||3081|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758509	.	C	G	33.17	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||4479|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||4532|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||4538|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||4540|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||4544|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||4570|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||4570|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3295|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||3077|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||3080|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758562	.	T	C	154.69	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||4426|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4479|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4485|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4487|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4491|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4517|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4517|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||3348|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||3024|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||3027|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758591	.	T	C	541.02	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||4397|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4450|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4456|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4458|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4462|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4488|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4488|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||3377|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||2995|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||2998|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758626	rs3131954	C	T	67685.55	.	AC=833;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4362|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4415|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4421|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4423|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4427|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4453|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4453|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3412|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||2960|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||2963|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758663	rs115326450	C	T	94.49	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4325|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4378|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4384|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4386|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4390|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4416|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4416|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3449|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||2923|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||2926|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758664	.	G	T	900.89	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||4324|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||4377|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||4383|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||4385|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||4389|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||4415|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||4415|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>T|||||3450|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>A|||||2922|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>A|||||2925|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758702	rs115211655	C	G	1522.71	.	AC=33;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||4286|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||4339|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||4345|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||4347|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||4351|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||4377|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||4377|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3488|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||2884|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||2887|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758708	rs115797850	A	G	1632.6	.	AC=34;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||4280|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||4333|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||4339|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||4341|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||4345|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||4371|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||4371|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||3494|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||2878|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||2881|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758761	rs114306945	A	G	1726.32	.	AC=41;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||4227|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||4280|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||4286|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||4288|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||4292|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||4318|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||4318|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||3547|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||2825|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||2828|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758767	rs116514284	C	G	604.2	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||4221|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||4274|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||4280|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||4282|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||4286|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||4312|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||4312|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3553|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||2819|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||2822|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758770	rs7554265	C	A	3170.72	.	AC=68;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||4218|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||4271|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||4277|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||4279|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||4283|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||4309|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||4309|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||3556|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||2816|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||2819|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758803	rs115871555	C	T	238.78	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4185|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4238|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4244|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4246|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4250|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4276|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4276|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3589|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||2783|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||2786|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758805	rs116285994	T	C	1234.0	.	AC=33;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||4183|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4236|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4242|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4244|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4248|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4274|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4274|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||3591|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||2781|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||2784|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758819	rs115369105	C	T	381.72	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||4169|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||4222|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||4228|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||4230|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||4234|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||4260|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||4260|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3605|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||2767|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||2770|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758841	rs115498424	T	C	4851.67	.	AC=47;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||4147|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4200|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4206|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4208|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4212|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4238|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4238|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||3627|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||2745|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||2748|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758855	.	C	G	624.54	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||4133|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||4186|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||4192|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||4194|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||4198|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||4224|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||4224|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3641|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||2731|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||2734|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758877	.	C	A	872.75	.	AC=64;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||4111|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||4164|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||4170|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||4172|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||4176|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||4202|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||4202|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||3663|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||2709|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||2712|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758913	.	T	A	235.64	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||4075|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||4128|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||4134|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||4136|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||4140|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||4166|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||4166|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||3699|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>T|||||2673|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>T|||||2676|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758932	.	G	T	719.1	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||4056|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||4109|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||4115|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||4117|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||4121|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||4147|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||4147|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>T|||||3718|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>A|||||2654|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>A|||||2657|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758933	.	C	G	1361.65	.	AC=95;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||4055|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||4108|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||4114|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||4116|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||4120|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||4146|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||4146|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3719|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||2653|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||2656|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758940	.	A	T	608.34	.	AC=64;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>T|||||4048|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>T|||||4101|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>T|||||4107|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>T|||||4109|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>T|||||4113|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>T|||||4139|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>T|||||4139|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>T|||||3726|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>A|||||2646|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>A|||||2649|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758954	.	T	C	619.95	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||4034|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4087|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4093|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4095|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4099|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4125|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4125|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||3740|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||2632|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||2635|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758963	.	G	C	1363.27	.	AC=41;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||4025|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||4078|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||4084|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||4086|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||4090|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||4116|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||4116|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||3749|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||2623|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||2626|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	758989	.	T	C	259.73	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||3999|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||4052|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||4058|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||4060|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||4064|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||4090|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||4090|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||3775|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||2597|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||2600|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759036	rs114525117	G	A	1352.19	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3952|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||4005|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||4011|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||4013|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||4017|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||4043|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||4043|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||3822|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||2550|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||2553|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759050	.	G	T	1111.7	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||3938|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||3991|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||3997|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||3999|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||4003|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||4029|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||4029|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>T|||||3836|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>A|||||2536|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>A|||||2539|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759097	.	C	G	221.63	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||3891|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||3944|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||3950|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||3952|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||3956|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||3982|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||3982|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>G|||||3883|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||2489|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||2492|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759113	.	C	T	141.31	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||3875|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||3928|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||3934|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||3936|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||3940|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||3966|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||3966|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3899|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||2473|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||2476|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759159	.	C	T	648.38	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||3829|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||3882|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||3888|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||3890|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||3894|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||3920|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||3920|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||3945|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||2427|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||2430|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759166	.	G	A	288.33	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3822|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||3875|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||3881|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||3883|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||3887|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||3913|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||3913|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||3952|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||2420|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||2423|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759177	.	G	A	352.88	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3811|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||3864|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||3870|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||3872|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||3876|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||3902|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||3902|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||3963|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||2409|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||2412|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759200	.	A	C	352.2	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>C|||||3788|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>C|||||3841|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>C|||||3847|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>C|||||3849|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>C|||||3853|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>C|||||3879|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>C|||||3879|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>C|||||3986|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>G|||||2386|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>G|||||2389|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759227	.	C	T	650.71	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||3761|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||3814|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||3820|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||3822|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||3826|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||3852|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||3852|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||4013|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||2359|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||2362|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759246	.	T	A	446.39	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||3742|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||3795|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||3801|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||3803|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||3807|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||3833|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||3833|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||4032|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>T|||||2340|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>T|||||2343|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759293	rs60744420	T	A	5929.85	.	AC=124;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||3695|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||3748|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||3754|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||3756|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||3760|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||3786|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||3786|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||4079|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>T|||||2293|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>T|||||2296|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759346	.	G	C	305.36	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||3642|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||3695|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||3701|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||3703|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||3707|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||3733|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||3733|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||4132|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||2240|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||2243|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759392	.	G	A	69.48	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3596|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||3649|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||3655|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||3657|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||3661|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||3687|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||3687|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||4178|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||2194|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||2197|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759437	.	T	C	75.01	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||3551|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||3604|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||3610|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||3612|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||3616|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||3642|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||3642|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||4223|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||2149|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||2152|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759458	.	G	A	187.09	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3530|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||3583|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||3589|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||3591|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||3595|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||3621|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||3621|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||4985|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||4985|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||4244|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||2128|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||2131|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759492	.	T	C	102.73	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||3496|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||3549|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||3555|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||3557|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||3561|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||3587|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||3587|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||4951|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||4951|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||4278|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||2094|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||2097|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759494	.	A	G	46.51	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||3494|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||3547|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||3553|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||3555|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||3559|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||3585|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||3585|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||4949|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||4949|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||4280|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||2092|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||2095|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759549	.	G	A	151.28	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3439|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||3492|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||3498|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||3500|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||3504|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||3530|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||3530|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||4894|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||4894|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||4335|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||2037|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||2040|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759598	.	G	A	384.49	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3390|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||3443|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||3449|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||3451|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||3455|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||3481|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||3481|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||4845|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||4845|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||4384|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||1988|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||1991|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759612	.	T	C	24.17	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||3376|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||3429|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||3435|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||3437|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||3441|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||3467|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||3467|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||4831|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||4831|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||4398|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||1974|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||1977|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759618	.	C	T	544.12	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||3370|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||3423|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||3429|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||3431|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||3435|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||3461|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||3461|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||4825|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||4825|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||4404|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||1968|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||1971|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759628	.	T	A	823.4	.	AC=45;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||3360|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||3413|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||3419|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||3421|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||3425|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||3451|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||3451|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>A|||||4815|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>A|||||4815|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||4414|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>T|||||1958|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>T|||||1961|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759700	.	T	C	14632.69	.	AC=438;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||3288|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||3341|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||3347|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||3349|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||3353|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||3379|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||3379|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||4743|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||4743|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||4486|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||1886|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||1889|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759829	rs12562204	A	G	596.62	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||3159|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||3212|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||3218|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||3220|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||3224|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||3250|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||3250|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||4614|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||4614|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||4615|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||1757|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||1760|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759837	rs114111569	T	A	48626.89	.	AC=815;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||3151|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||3204|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||3210|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||3212|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||3216|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||3242|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||3242|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>A|||||4606|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>A|||||4606|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>A|||||4623|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>T|||||1749|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>T|||||1752|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759844	.	C	T	69.35	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||3144|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||3197|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||3203|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||3205|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||3209|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||3235|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||3235|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||4599|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||4599|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||4630|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||1742|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||1745|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759884	.	C	A	249.46	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||3104|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||3157|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||3163|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||3165|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||3169|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||3195|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||3195|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>A|||||4559|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>A|||||4559|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>A|||||4670|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||1702|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||1705|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759932	.	G	A	106.77	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||3056|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||3109|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||3115|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||3117|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||3121|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||3147|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||3147|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||4511|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||4511|,A|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>A|||||4718|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||1654|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||1657|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759970	.	A	G	695.55	.	AC=31;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||3018|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||3071|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||3077|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||3079|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||3083|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||3109|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||3109|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||4473|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||4473|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||4756|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||1616|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||1619|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	759984	.	G	C	215.41	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||3004|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||3057|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||3063|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||3065|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||3069|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||3095|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||3095|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||4459|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||4459|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944G>C|||||4770|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||1602|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||1605|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760052	.	C	T	543.0	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2936|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2989|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2995|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2997|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||3001|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||3027|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||3027|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||4391|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||4391|,T|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944C>T|||||4838|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||1534|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||1537|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760186	.	A	G	314.79	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||2802|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||2855|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||2861|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||2863|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||2867|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||2893|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||2893|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||4257|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||4257|,G|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944A>G|||||4972|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||1400|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||1403|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760211	.	T	C	198.63	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||2777|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||2830|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||2836|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||2838|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||2842|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||2868|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||2868|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||4232|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||4232|,C|downstream_gene_variant|MODIFIER|FAM87B|ENSG00000177757|transcript|ENST00000326734|lincRNA||n.*1944T>C|||||4997|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||1375|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||1378|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760224	.	A	G	114.49	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||2764|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||2817|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||2823|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||2825|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||2829|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||2855|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||2855|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||4219|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||4219|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||1362|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||1365|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760254	.	C	T	598.95	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2734|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2787|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2793|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2795|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||2799|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||2825|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||2825|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||4189|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||4189|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||1332|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||1335|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760283	.	C	G	892.47	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||2705|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||2758|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||2764|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||2766|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||2770|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||2796|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||2796|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||4160|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||4160|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||1303|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||1306|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760324	.	G	A	1025.81	.	AC=43;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||2664|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||2717|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||2723|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||2725|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||2729|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||2755|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||2755|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||4119|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||4119|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||1262|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||1265|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760340	.	T	A	74.36	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||2648|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||2701|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||2707|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||2709|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||2713|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||2739|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||2739|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>A|||||4103|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>A|||||4103|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>T|||||1246|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>T|||||1249|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760357	.	C	G	314.04	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||2631|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||2684|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||2690|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||2692|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||2696|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||2722|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||2722|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||4086|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||4086|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||1229|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||1232|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760411	.	T	C	1229.32	.	AC=45;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||2577|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||2630|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||2636|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||2638|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||2642|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||2668|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||2668|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||4032|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||4032|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||1175|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||1178|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760422	.	C	T	7879.79	.	AC=104;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2566|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2619|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2625|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2627|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||2631|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||2657|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||2657|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||4021|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||4021|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||1164|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||1167|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760432	.	C	G	677.81	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||2556|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||2609|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||2615|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||2617|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||2621|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||2647|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||2647|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||4011|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||4011|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||1154|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||1157|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760543	rs3964476	T	C	831.58	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||2445|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||2498|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||2504|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||2506|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||2510|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||2536|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||2536|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||3900|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||3900|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||1043|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||1046|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760565	.	G	C	105.51	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||2423|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||2476|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||2482|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||2484|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||2488|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||2514|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||2514|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||3878|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||3878|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||1021|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||1024|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760578	.	G	T	251.95	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||2410|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||2463|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||2469|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||2471|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||2475|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||2501|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||2501|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>T|||||3865|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>T|||||3865|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>A|||||1008|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>A|||||1011|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760616	.	C	T	7.84	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2372|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2425|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2431|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2433|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||2437|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||2463|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||2463|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3827|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3827|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||970|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||973|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760621	.	C	T	32.15	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2367|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2420|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2426|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2428|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||2432|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||2458|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||2458|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3822|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3822|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||965|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||968|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760641	rs3964477	A	C	1159.07	.	AC=41;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>C|||||2347|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>C|||||2400|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>C|||||2406|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>C|||||2408|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>C|||||2412|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>C|||||2438|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>C|||||2438|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>C|||||3802|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>C|||||3802|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>G|||||945|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>G|||||948|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760676	.	T	G	78.88	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>G|||||2312|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>G|||||2365|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>G|||||2371|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>G|||||2373|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>G|||||2377|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>G|||||2403|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>G|||||2403|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>G|||||3767|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>G|||||3767|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>C|||||910|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>C|||||913|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760721	.	C	T	11.88	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2267|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2320|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2326|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2328|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||2332|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||2358|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||2358|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3722|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3722|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||865|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||868|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760809	.	T	C	1023.05	.	AC=42;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||2179|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||2232|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||2238|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||2240|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||2244|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||2270|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||2270|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||3634|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||3634|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||777|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||780|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760912	rs1048488	C	T	79107.62	.	AC=884;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2076|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2129|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2135|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2137|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||2141|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||2167|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||2167|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3531|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3531|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||674|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||677|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760913	.	G	C	517.4	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||2075|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||2128|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||2134|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||2136|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||2140|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||2166|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||2166|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||3530|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||3530|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||673|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||676|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760922	rs3882068	G	C	431.02	.	AC=29;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||2066|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||2119|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||2125|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||2127|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||2131|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||2157|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||2157|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||3521|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||3521|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||664|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||667|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760957	.	A	G	362.85	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||2031|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||2084|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||2090|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||2092|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||2096|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||2122|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||2122|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||3486|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||3486|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||629|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||632|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760968	.	C	T	91.72	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||2020|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||2073|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||2079|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||2081|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||2085|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||2111|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||2111|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3475|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3475|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||618|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||621|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	760998	.	C	A	829.14	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||1990|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||2043|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||2049|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||2051|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||2055|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||2081|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||2081|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>A|||||3445|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>A|||||3445|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||588|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||591|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761011	.	G	A	227.6	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||1977|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||2030|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||2036|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||2038|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||2042|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||2068|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||2068|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||3432|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||3432|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||575|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||578|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761081	.	G	T	158.35	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||1907|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||1960|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||1966|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||1968|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||1972|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||1998|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||1998|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>T|||||3362|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>T|||||3362|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>A|||||505|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>A|||||508|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761104	.	T	G	384.69	.	AC=29;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>G|||||1884|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>G|||||1937|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>G|||||1943|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>G|||||1945|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>G|||||1949|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>G|||||1975|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>G|||||1975|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>G|||||3339|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>G|||||3339|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>C|||||482|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>C|||||485|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761112	rs112108644	T	C	166.64	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||1876|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1929|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1935|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1937|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1941|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1967|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1967|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||3331|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||3331|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||474|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||477|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761147	rs3115850	T	C	69163.2	.	AC=864;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||1841|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1894|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1900|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1902|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1906|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1932|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1932|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||3296|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||3296|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||439|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||442|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761168	.	A	T	103.57	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>T|||||1820|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>T|||||1873|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>T|||||1879|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>T|||||1881|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>T|||||1885|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>T|||||1911|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>T|||||1911|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>T|||||3275|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>T|||||3275|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>A|||||418|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>A|||||421|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761191	.	C	T	662.71	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||1797|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||1850|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||1856|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||1858|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||1862|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||1888|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||1888|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3252|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3252|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||395|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||398|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761226	.	C	G	224.73	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||1762|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||1815|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||1821|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||1823|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||1827|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||1853|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||1853|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||3217|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||3217|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>C|||||360|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>C|||||363|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761252	rs117957074	C	T	1263.26	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||1736|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||1789|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||1795|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||1797|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||1801|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||1827|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||1827|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3191|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3191|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||334|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||337|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761260	.	A	G	256.22	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||1728|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||1781|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||1787|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||1789|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||1793|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||1819|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||1819|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||3183|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||3183|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317T>C|||||326|,G|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298T>C|||||329|,G|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761278	.	G	C	1182.51	.	AC=55;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||1710|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||1763|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||1769|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||1771|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||1775|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||1801|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||1801|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||3165|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||3165|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>G|||||308|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>G|||||311|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761334	.	C	A	577.31	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||1654|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||1707|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||1713|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||1715|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||1719|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||1745|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||1745|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>A|||||3109|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>A|||||3109|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||252|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||255|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761373	.	T	C	73.96	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||1615|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1668|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1674|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1676|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1680|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1706|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1706|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||3070|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||3070|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||213|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||216|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761412	.	C	T	2056.34	.	AC=73;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||1576|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||1629|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||1635|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||1637|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||1641|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||1667|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||1667|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||3031|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||3031|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>A|||||174|,T|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>A|||||177|,T|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761435	.	T	C	257.6	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||1553|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1606|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1612|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1614|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1618|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1644|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1644|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||3008|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||3008|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||151|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||154|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761465	.	T	C	280.05	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||1523|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1576|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1582|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1584|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1588|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1614|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1614|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||2978|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||2978|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317A>G|||||121|,C|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298A>G|||||124|,C|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761531	.	C	A	265.47	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||1457|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||1510|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||1516|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||1518|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||1522|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||1548|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||1548|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>A|||||2912|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>A|||||2912|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317G>T|||||55|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298G>T|||||58|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761543	.	G	A	512.93	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||1445|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||1498|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||1504|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||1506|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||1510|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||1536|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||1536|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2900|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2900|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.*1317C>T|||||43|,A|downstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.*1298C>T|||||46|,A|intergenic_region|MODIFIER|FAM87B-LINC00115|ENSG00000177757-ENSG00000225880|intergenic_region|ENSG00000177757-ENSG00000225880|||||||||
1	761606	.	G	A	1312.96	.	AC=52;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||1382|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||1435|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||1441|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||1443|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||1447|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||1473|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||1473|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2837|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2837|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1297C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1281C>T||||||
1	761610	.	T	C	759.12	.	AC=33;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||1378|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1431|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1437|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1439|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1443|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1469|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1469|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||2833|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||2833|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1293A>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1277A>G||||||
1	761681	rs1057215	T	G	1000.33	.	AC=49;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>G|||||1307|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>G|||||1360|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>G|||||1366|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>G|||||1368|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>G|||||1372|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>G|||||1398|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>G|||||1398|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>G|||||2762|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>G|||||2762|,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1222A>C||||||,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1206A>C||||||
1	761704	.	T	A	1143.9	.	AC=57;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||1284|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||1337|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||1343|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||1345|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||1349|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||1375|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||1375|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>A|||||2739|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>A|||||2739|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1199A>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1183A>T||||||
1	761732	rs2286139	C	T	33682.44	.	AC=666;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||1256|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||1309|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||1315|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||1317|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||1321|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||1347|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||1347|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||2711|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||2711|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1171G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1155G>A||||||
1	761752	rs1057213	C	T	25756.17	.	AC=620;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||1236|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||1289|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||1295|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||1297|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||1301|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||1327|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||1327|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||2691|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||2691|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1151G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1135G>A||||||
1	761761	.	A	G	775.37	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||1227|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||1280|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||1286|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||1288|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||1292|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||1318|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||1318|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||2682|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||2682|,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1142T>C||||||,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1126T>C||||||
1	761764	.	G	A	1169.46	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||1224|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||1277|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||1283|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||1285|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||1289|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||1315|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||1315|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2679|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2679|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1139C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1123C>T||||||
1	761788	.	C	T	55.15	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||1200|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||1253|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||1259|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||1261|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||1265|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||1291|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||1291|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||2655|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||2655|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1115G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1099G>A||||||
1	761800	rs1064272	A	T	7877.75	.	AC=192;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>T|||||1188|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>T|||||1241|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>T|||||1247|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>T|||||1249|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>T|||||1253|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>T|||||1279|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>T|||||1279|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>T|||||2643|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>T|||||2643|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1103T>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1087T>A||||||
1	761811	rs55884753	G	A	9686.35	.	AC=236;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||1177|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||1230|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||1236|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||1238|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||1242|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||1268|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||1268|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2632|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2632|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1092C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1076C>T||||||
1	761881	.	A	C	322.33	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>C|||||1107|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>C|||||1160|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>C|||||1166|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>C|||||1168|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>C|||||1172|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>C|||||1198|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>C|||||1198|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>C|||||2562|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>C|||||2562|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.1022T>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.1006T>G||||||
1	761936	.	T	C	18.41	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||1052|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1105|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1111|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1113|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1117|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1143|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1143|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||2507|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||2507|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.967A>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.951A>G||||||
1	761945	.	A	T	35.22	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>T|||||1043|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>T|||||1096|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>T|||||1102|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>T|||||1104|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>T|||||1108|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>T|||||1134|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>T|||||1134|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>T|||||2498|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>T|||||2498|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.958T>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.942T>A||||||
1	761958	rs115523412	C	T	1801.84	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||1030|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||1083|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||1089|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||1091|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||1095|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||1121|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||1121|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||2485|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||2485|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.945G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.929G>A||||||
1	761962	.	G	A	473.95	.	AC=38;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||1026|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||1079|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||1085|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||1087|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||1091|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||1117|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||1117|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2481|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2481|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.941C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.925C>T||||||
1	762005	.	G	A	245.5	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||983|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||1036|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||1042|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||1044|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||1048|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||1074|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||1074|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2438|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2438|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||4980|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.898C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.882C>T||||||
1	762022	.	T	C	337.6	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||966|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||1019|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||1025|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||1027|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||1031|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||1057|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||1057|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||2421|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||2421|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||4963|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.881A>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.865A>G||||||
1	762061	.	T	A	110.47	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||927|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||980|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||986|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||988|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||992|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||1018|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||1018|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>A|||||2382|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>A|||||2382|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>A|||||4924|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.842A>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.826A>T||||||
1	762085	.	G	A	980.9	.	AC=41;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||903|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||956|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||962|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||964|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||968|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||994|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||994|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2358|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2358|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||4900|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.818C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.802C>T||||||
1	762109	.	C	T	1390.82	.	AC=63;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||879|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||932|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||938|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||940|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||944|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||970|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||970|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||2334|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||2334|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||4876|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.794G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.778G>A||||||
1	762142	.	C	A	27.05	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||846|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||899|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||905|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||907|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||911|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||937|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||937|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>A|||||2301|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>A|||||2301|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>A|||||4843|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.761G>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.745G>T||||||
1	762187	.	C	T	355.16	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||801|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||854|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||860|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||862|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||866|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||892|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||892|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||2256|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||2256|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||4798|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.716G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.700G>A||||||
1	762273	rs3115849	G	A	13805.69	.	AC=439;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||715|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||768|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||774|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||776|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||780|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||806|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||806|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2170|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2170|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||4712|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.630C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.614C>T||||||
1	762307	.	G	A	841.98	.	AC=46;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||681|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||734|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||740|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||742|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||746|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||772|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||772|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||2136|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||2136|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||4678|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.596C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.580C>T||||||
1	762320	rs75333668	C	T	2492.98	.	AC=86;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||668|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||721|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||727|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||729|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||733|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||759|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||759|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||2123|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||2123|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||4665|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.583G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.567G>A||||||
1	762330	rs74045217	G	T	2116.88	.	AC=74;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||658|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||711|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||717|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||719|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||723|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||749|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||749|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>T|||||2113|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>T|||||2113|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||4655|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.573C>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.557C>A||||||
1	762345	rs74045218	A	G	2117.19	.	AC=97;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||643|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||696|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||702|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||704|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||708|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||734|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||734|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||2098|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||2098|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||4640|,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.558T>C||||||,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.542T>C||||||
1	762398	.	C	G	35.77	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||590|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||643|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||649|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||651|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||655|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||681|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||681|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||2045|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||2045|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||4587|,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.505G>C||||||,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.489G>C||||||
1	762409	.	G	C	36.98	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||579|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||632|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||638|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||640|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||644|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||670|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||670|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||2034|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||2034|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4576|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.494C>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.478C>G||||||
1	762472	.	C	T	1134.3	.	AC=53;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||516|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||569|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||575|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||577|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||581|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||607|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||607|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||1971|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||1971|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||4513|,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.431G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.415G>A||||||
1	762485	.	C	A	2142.87	.	AC=86;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>A|||||503|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>A|||||556|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>A|||||562|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>A|||||564|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>A|||||568|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>A|||||594|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>A|||||594|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>A|||||1958|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>A|||||1958|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>A|||||4500|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.418G>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.402G>T||||||
1	762494	.	C	G	179.82	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||494|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||547|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||553|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||555|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||559|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||585|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||585|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||1949|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||1949|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||4491|,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.409G>C||||||,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.393G>C||||||
1	762496	.	G	C	8.44	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||492|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||545|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||551|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||553|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||557|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||583|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||583|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1947|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1947|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4489|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.407C>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.391C>G||||||
1	762497	.	G	C	38.29	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||491|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||544|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||550|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||552|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||556|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||582|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||582|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1946|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1946|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4488|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.406C>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.390C>G||||||
1	762579	.	G	C	129.33	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||409|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||462|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||468|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||470|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||474|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||500|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||500|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1864|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1864|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4406|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.324C>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.308C>G||||||
1	762589	rs71507461	G	C	19134.42	.	AC=527;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||399|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||452|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||458|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||460|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||464|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||490|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||490|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1854|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1854|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4396|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.314C>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.298C>G||||||
1	762592	rs71507462	C	G	16765.54	.	AC=496;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>G|||||396|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||449|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||455|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||457|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||461|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||487|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||487|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||1851|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||1851|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||4393|,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.311G>C||||||,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.295G>C||||||
1	762601	rs71507463	T	C	15623.64	.	AC=471;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>C|||||387|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>C|||||440|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>C|||||446|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>C|||||448|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>C|||||452|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>C|||||478|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>C|||||478|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||1842|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||1842|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||4384|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.302A>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.286A>G||||||
1	762632	rs61768173	T	A	14095.73	.	AC=443;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1T>A|||||356|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1T>A|||||409|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1T>A|||||415|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1T>A|||||417|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1T>A|||||421|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1T>A|||||447|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1T>A|||||447|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>A|||||1811|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>A|||||1811|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>A|||||4353|,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.271A>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.255A>T||||||
1	762659	.	G	C	84.0	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||329|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||382|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||388|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||390|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||394|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||420|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||420|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1784|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1784|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4326|,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.244C>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.228C>G||||||
1	762696	.	A	G	214.61	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1A>G|||||292|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1A>G|||||345|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1A>G|||||351|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1A>G|||||353|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1A>G|||||357|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1A>G|||||383|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1A>G|||||383|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||1747|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||1747|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||4289|,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.207T>C||||||,G|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.191T>C||||||
1	762815	.	G	A	86.27	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||173|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||226|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||232|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||234|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||238|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||264|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||264|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||1628|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||1628|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||4170|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:762786_762935|||||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.88C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.72C>T||||||
1	762818	.	G	C	12.77	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||170|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||223|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||229|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||231|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||235|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||261|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||261|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1625|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1625|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4167|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:762786_762935|||||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.85C>G||||||,C|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.69C>G||||||
1	762820	.	G	A	47.2	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||168|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||221|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||227|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||229|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||233|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||259|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||259|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||1623|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||1623|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||4165|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:762786_762935|||||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.83C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.67C>T||||||
1	762843	.	C	T	32.55	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1C>T|||||145|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>T|||||198|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>T|||||204|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>T|||||206|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>T|||||210|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>T|||||236|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>T|||||236|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||1600|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||1600|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||4142|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:762786_762935|||||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.60G>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.44G>A||||||
1	762852	.	G	T	58.5	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||136|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||189|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||195|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||197|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||201|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||227|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||227|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>T|||||1591|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>T|||||1591|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||4133|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:762786_762935|||||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.51C>A||||||,T|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.35C>A||||||
1	762856	.	G	A	1103.35	.	AC=54;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>A|||||132|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>A|||||185|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>A|||||191|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>A|||||193|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>A|||||197|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>A|||||223|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>A|||||223|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||1587|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||1587|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||4129|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:762786_762935|||||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA|1/1|n.47C>T||||||,A|non_coding_exon_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA|1/1|n.31C>T||||||
1	762932	.	G	C	114.02	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>G|||||30|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>C|||||56|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>G|||||46|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>C|||||109|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>C|||||115|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>C|||||117|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>C|||||121|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>C|||||147|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>C|||||147|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1511|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1511|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||4053|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:762786_762935|||||||||,C|intergenic_region|MODIFIER|LINC00115-LINC01128|ENSG00000225880-ENSG00000228794|intergenic_region|ENSG00000225880-ENSG00000228794|||||||||
1	762947	.	G	T	42.51	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||45|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.-1G>T|||||41|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||61|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1G>T|||||94|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1G>T|||||100|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1G>T|||||102|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1G>T|||||106|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1G>T|||||132|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1G>T|||||132|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>T|||||1496|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>T|||||1496|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||4038|,T|intergenic_region|MODIFIER|LINC00115-LINC01128|ENSG00000225880-ENSG00000228794|intergenic_region|ENSG00000225880-ENSG00000228794|||||||||
1	763016	.	C	G	19.6	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||114|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||130|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.-1C>G|||||25|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.-1C>G|||||31|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.-1C>G|||||33|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.-1C>G|||||37|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.-1C>G|||||63|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.-1C>G|||||63|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>G|||||1427|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>G|||||1427|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||3969|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/5|n.29C>G||||||
1	763080	.	G	T	502.64	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||178|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||194|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>T|||||1363|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>T|||||1363|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||3905|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/5|n.93G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/5|n.40G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/3|n.34G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/4|n.32G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/6|n.28G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/5|n.2G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/5|n.2G>T||||||
1	763091	.	G	A	779.95	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||189|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||205|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||1352|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||1352|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||3894|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/5|n.104G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/5|n.51G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/3|n.45G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/4|n.43G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/6|n.39G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/5|n.13G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/5|n.13G>A||||||
1	763101	.	G	A	68.62	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||199|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||215|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||1342|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||1342|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||3884|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/5|n.114G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/5|n.61G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/3|n.55G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/4|n.53G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/6|n.49G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/5|n.23G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/5|n.23G>A||||||
1	763104	.	G	C	7.63	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>G|||||202|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>G|||||218|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||1339|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||1339|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||3881|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/5|n.117G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/5|n.64G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/3|n.58G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/4|n.56G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/6|n.52G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/5|n.26G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/5|n.26G>C||||||
1	763116	.	C	T	349.67	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||214|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||230|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||1327|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||1327|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||3869|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/5|n.129C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/5|n.76C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/3|n.70C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/4|n.68C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/6|n.64C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/5|n.38C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/5|n.38C>T||||||
1	763293	.	T	A	17.07	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>T|||||391|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>T|||||407|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>A|||||1150|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>A|||||1150|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>A|||||3692|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+138T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+138T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+138T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+138T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+138T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+138T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+138T>A||||||
1	763354	.	C	T	217.08	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||452|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||468|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||1089|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||1089|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||3631|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+199C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+199C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+199C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+199C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+199C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+199C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+199C>T||||||
1	763394	.	G	A	5408.76	.	AC=229;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||492|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||508|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||1049|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||1049|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||3591|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+239G>A||||||
1	763425	.	C	T	20.13	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||523|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||539|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>T|||||1018|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>T|||||1018|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||3560|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+270C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+270C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+270C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+270C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+270C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+270C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+270C>T||||||
1	763485	.	A	C	45.68	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>G|||||583|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>G|||||599|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>C|||||958|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>C|||||958|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>C|||||3500|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+330A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+330A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+330A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+330A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+330A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+330A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+330A>C||||||
1	763577	.	A	G	127.87	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||675|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||691|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||866|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||866|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||3408|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+422A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+422A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+422A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+422A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+422A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+422A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+422A>G||||||
1	763583	.	C	A	466.28	.	AC=41;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>T|||||681|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>T|||||697|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1C>A|||||860|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1C>A|||||860|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>A|||||3402|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+428C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+428C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+428C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+428C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+428C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+428C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+428C>A||||||
1	763655	.	G	A	402.86	.	AC=48;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||753|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||769|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||788|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||788|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||3330|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+500G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+500G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+500G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+500G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+500G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+500G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+500G>A||||||
1	763679	.	T	C	407.04	.	AC=47;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||777|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||793|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||764|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||764|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||3306|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+524T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+524T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+524T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+524T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+524T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+524T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+524T>C||||||
1	763692	.	G	C	523.54	.	AC=58;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>G|||||790|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>G|||||806|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||751|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||751|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||3293|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.168+537G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.115+537G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.109+537G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.107+537G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.103+537G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.77+537G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.77+537G>C||||||
1	763822	.	A	G	228.05	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||920|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||936|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||621|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||621|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||3163|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.169-561A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.116-561A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.110-561A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.108-561A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.104-561A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.78-561A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.78-561A>G||||||
1	763941	.	G	C	26.13	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>G|||||1039|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>G|||||1055|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>C|||||502|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>C|||||502|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||3044|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.169-442G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.116-442G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.110-442G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.108-442G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.104-442G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.78-442G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.78-442G>C||||||
1	764047	.	G	A	135.46	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||1145|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||1161|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1G>A|||||396|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1G>A|||||396|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||2938|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.169-336G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.116-336G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.110-336G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.108-336G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.104-336G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.78-336G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.78-336G>A||||||
1	764074	.	T	C	987.68	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||1172|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||1188|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>C|||||369|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>C|||||369|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||2911|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.169-309T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.116-309T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.110-309T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.108-309T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.104-309T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.78-309T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.78-309T>C||||||
1	764176	.	A	G	162.98	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||1274|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||1290|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1A>G|||||267|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1A>G|||||267|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||2809|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.169-207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.116-207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.110-207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.108-207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.104-207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.78-207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.78-207A>G||||||
1	764191	rs7515915	T	G	10941.93	.	AC=205;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>C|||||1289|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>C|||||1305|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.-1T>G|||||252|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.-1T>G|||||252|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>G|||||2794|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|1/4|n.169-192T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|1/4|n.116-192T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|1/2|n.110-192T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|1/3|n.108-192T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|1/5|n.104-192T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|1/4|n.78-192T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|1/4|n.78-192T>G||||||
1	764473	.	C	G	53.97	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||1571|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||1587|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||2512|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/5|n.259C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/5|n.206C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/3|n.200C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/4|n.198C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/6|n.194C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/5|n.168C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/5|n.168C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/4|n.31C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/4|n.31C>G||||||
1	764504	.	G	T	55.36	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||1602|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||1618|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||2481|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+20G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+20G>T||||||
1	764568	.	C	G	43.57	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||1666|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||1682|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||2417|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+84C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+84C>G||||||
1	764634	.	G	A	21.99	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||1732|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||1748|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||2351|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+150G>A||||||
1	764649	.	T	C	219.79	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||1747|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||1763|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||2336|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+165T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+165T>C||||||
1	764691	.	T	C	316.97	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||1789|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||1805|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||2294|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+207T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+207T>C||||||
1	764733	.	T	A	2014.7	.	AC=47;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>T|||||1831|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>T|||||1847|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>A|||||2252|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+249T>A||||||
1	764850	.	T	C	313.1	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||1948|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||1964|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||2135|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+366T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+366T>C||||||
1	764905	.	A	G	1236.64	.	AC=43;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||2003|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||2019|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||2080|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+421A>G||||||
1	764944	.	A	G	227.22	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||2042|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||2058|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||2041|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+460A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+460A>G||||||
1	764946	.	T	C	600.14	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||2044|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||2060|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||2039|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+462T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+462T>C||||||
1	764951	.	A	T	123.91	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>A|||||2049|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>A|||||2065|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>T|||||2034|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+467A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+467A>T||||||
1	764996	.	G	A	114.84	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||2094|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||2110|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||1989|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+512G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+512G>A||||||
1	765028	rs2519025	C	T	6373.2	.	AC=101;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||2126|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||2142|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||1957|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+544C>T||||||
1	765122	.	T	C	679.74	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||2220|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||2236|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||1863|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+638T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+638T>C||||||
1	765164	.	A	G	111.92	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||2262|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||2278|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||1821|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+680A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+680A>G||||||
1	765189	.	T	C	1468.74	.	AC=66;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||2287|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||2303|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||1796|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+705T>C||||||
1	765190	.	T	C	17.48	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||2288|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||2304|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||1795|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+706T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+706T>C||||||
1	765203	rs2519022	C	G	1594.18	.	AC=43;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||2301|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||2317|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||1782|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+719C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+719C>G||||||
1	765208	rs114328897	T	C	335.81	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||2306|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||2322|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||1777|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+724T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+724T>C||||||
1	765211	.	A	T	289.43	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>A|||||2309|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>A|||||2325|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>T|||||1774|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+727A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+727A>T||||||
1	765237	.	G	T	151.82	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||2335|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||2351|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||1748|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+753G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+753G>T||||||
1	765269	rs11240776	A	G	573.77	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||2367|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||2383|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||1716|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+785A>G||||||
1	765329	.	C	G	236.47	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||2427|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||2443|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||1656|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+845C>G||||||
1	765349	.	T	G	106.4	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>C|||||2447|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>C|||||2463|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>G|||||1636|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+865T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+865T>G||||||
1	765391	rs2519021	G	A	454.09	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||2489|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||2505|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||1594|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+907G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+907G>A||||||
1	765437	rs3131947	G	A	26.45	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||2535|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||2551|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||1548|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+953G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+953G>A||||||
1	765450	.	T	G	211.98	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>C|||||2548|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>C|||||2564|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>G|||||1535|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+966T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+966T>G||||||
1	765467	.	T	C	28.34	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||2565|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||2581|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||1518|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+983T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+983T>C||||||
1	765499	rs2519019	G	T	961.08	.	AC=43;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||2597|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||2613|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||1486|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1015G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1015G>T||||||
1	765536	rs2519018	C	T	438.38	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||2634|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||2650|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||1449|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1052C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1052C>T||||||
1	765595	.	G	A	364.33	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||2693|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||2709|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||1390|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1111G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1111G>A||||||
1	765652	.	G	C	1207.41	.	AC=48;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>G|||||2750|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>G|||||2766|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||1333|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1168G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1168G>C||||||
1	765669	.	G	A	15.69	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||2767|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||2783|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||1316|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1185G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1185G>A||||||
1	765709	.	T	C	361.93	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||2807|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||2823|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||1276|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1225T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1225T>C||||||
1	765747	.	A	G	754.29	.	AC=35;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||2845|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||2861|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||1238|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1263A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1263A>G||||||
1	765887	rs4040656	A	C	12135.86	.	AC=171;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>G|||||2985|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>G|||||3001|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>C|||||1098|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1403A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1403A>C||||||
1	765904	rs115541281	G	T	476.97	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||3002|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||3018|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||1081|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1420G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1420G>T||||||
1	765908	rs2519017	A	G	2330.51	.	AC=100;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||3006|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||3022|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||1077|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1424A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1424A>G||||||
1	765948	rs2519016	C	T	92.04	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||3046|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||3062|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||1037|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1464C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1464C>T||||||
1	766007	rs61768174	A	C	3205.87	.	AC=96;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>G|||||3105|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>G|||||3121|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>C|||||978|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1523A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1523A>C||||||
1	766105	.	T	A	17676.69	.	AC=378;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>T|||||3203|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>T|||||3219|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>A|||||880|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1621T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1621T>A||||||
1	766206	.	G	T	1531.16	.	AC=63;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||3304|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||3320|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||779|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1722G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1722G>T||||||
1	766292	rs116108736	C	T	1202.92	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||3390|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||3406|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||693|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1808C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1808C>T||||||
1	766319	.	G	C	105.86	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>G|||||3417|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>G|||||3433|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>C|||||666|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1835G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1835G>C||||||
1	766405	.	G	A	7.37	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||3503|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||3519|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||580|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+1921G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+1921G>A||||||
1	766674	rs2980312	G	A	755.12	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||3772|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||3788|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||311|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2190G>A||||||
1	766689	.	A	T	125.74	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>A|||||3787|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>A|||||3803|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>T|||||296|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2205A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2205A>T||||||
1	766712	.	A	C	339.84	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>G|||||3810|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>G|||||3826|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>C|||||273|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:766706_766855|||||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2228A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2228A>C||||||
1	766749	.	T	C	287.96	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||3847|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||3863|,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>C|||||236|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:766706_766855|||||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2265T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2265T>C||||||
1	766768	rs114789108	G	A	62.53	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||3866|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||3882|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||217|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:766706_766855|||||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2284G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2284G>A||||||
1	766783	.	G	A	117.25	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||3881|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||3897|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||202|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:766706_766855|||||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2299G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2299G>A||||||
1	766785	rs116512010	G	A	638.97	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||3883|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||3899|,A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>A|||||200|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:766706_766855|||||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2301G>A||||||
1	766790	rs3131946	A	G	153.74	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||3888|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||3904|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||195|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:766706_766855|||||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2306A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2306A>G||||||
1	766814	rs3131945	G	T	588.63	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||3912|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||3928|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1G>T|||||171|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:766706_766855|||||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2330G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2330G>T||||||
1	766879	.	C	G	251.4	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||3977|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||3993|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>G|||||106|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2395C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2395C>G||||||
1	766897	rs112955445	T	G	16.46	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>C|||||3995|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>C|||||4011|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>G|||||88|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2413T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2413T>G||||||
1	766902	.	T	G	14.0	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>C|||||4000|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>C|||||4016|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1T>G|||||83|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2418T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2418T>G||||||
1	766915	.	C	T	5.66	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4013|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4029|,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1C>T|||||70|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2431C>T||||||
1	766939	.	A	G	333.28	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||4037|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||4053|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.-1A>G|||||46|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2455A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2455A>G||||||
1	766988	.	C	G	73.65	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||4086|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||4102|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2504C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2504C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/2|n.4C>G||||||
1	766992	.	A	G	81.88	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||4090|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||4106|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2508A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2508A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/2|n.8A>G||||||
1	767038	rs12756876	G	A	1286.32	.	AC=48;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4136|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4152|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2554G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2554G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/2|n.54G>A||||||
1	767070	rs12741327	A	G	470.69	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||4168|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||4184|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2586A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+13A>G||||||
1	767091	rs117374926	A	G	136.99	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||4189|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||4205|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2607A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+34A>G||||||
1	767096	rs115991721	A	G	6019.88	.	AC=71;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||4194|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||4210|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2612A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+39A>G||||||
1	767138	.	A	C	990.87	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>G|||||4236|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>G|||||4252|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2654A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+81A>C||||||
1	767175	.	T	C	1287.15	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||4273|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||4289|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2691T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+118T>C||||||
1	767220	.	C	T	638.72	.	AC=33;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4318|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4334|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2736C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+163C>T||||||
1	767236	rs12733890	C	G	637.57	.	AC=33;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||4334|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||4350|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2752C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+179C>G||||||
1	767270	.	A	C	178.44	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>G|||||4368|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>G|||||4384|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2786A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+213A>C||||||
1	767313	rs12734073	C	G	446.65	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>C|||||4411|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>C|||||4427|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2829C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+256C>G||||||
1	767351	rs12734101	C	T	1773.32	.	AC=53;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4449|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4465|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2867C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+294C>T||||||
1	767459	rs12738002	C	T	1005.0	.	AC=44;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4557|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4573|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+2975C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+402C>T||||||
1	767528	rs12738177	C	T	373.22	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4626|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4642|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3044C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+471C>T||||||
1	767532	rs12723102	G	A	277.84	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4630|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4646|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3048G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+475G>A||||||
1	767533	.	T	C	263.77	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||4631|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||4647|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3049T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+476T>C||||||
1	767566	.	A	G	42.16	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||4664|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||4680|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3082A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+509A>G||||||
1	767569	rs12750648	T	C	309.52	.	AC=21;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||4667|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||4683|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+512T>C||||||
1	767586	rs12723225	G	T	120.72	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||4684|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||4700|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3102G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+529G>T||||||
1	767598	.	G	A	60.25	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4696|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4712|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3114G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+541G>A||||||
1	767632	.	C	T	41.17	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4730|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4746|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3148C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+575C>T||||||
1	767633	.	G	T	616.99	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>A|||||4731|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>A|||||4747|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3149G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+576G>T||||||
1	767677	.	G	A	1797.74	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4775|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4791|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3193G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+620G>A||||||
1	767687	.	T	C	274.12	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1A>G|||||4785|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1A>G|||||4801|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3203T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+630T>C||||||
1	767702	.	C	T	40.63	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4800|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4816|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3218C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+645C>T||||||
1	767703	rs28557077	G	A	1728.41	.	AC=47;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4801|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4817|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+646G>A||||||
1	767723	.	G	A	41.88	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4821|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4837|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3239G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+666G>A||||||
1	767780	rs2905042	G	A	29911.21	.	AC=741;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4878|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4894|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3296G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+723G>A||||||
1	767811	.	G	C	143.27	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>G|||||4909|,C|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>G|||||4925|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3327G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+754G>C||||||
1	767813	rs114066716	G	A	983.23	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1C>T|||||4911|,A|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1C>T|||||4927|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3329G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+756G>A||||||
1	767817	.	C	T	378.89	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1G>A|||||4915|,T|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1G>A|||||4931|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3333C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+760C>T||||||
1	767876	.	A	G	261.22	.	AC=27;ANN=G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000473798|lincRNA||n.-1T>C|||||4974|,G|upstream_gene_variant|MODIFIER|LINC00115|ENSG00000225880|transcript|ENST00000536430|lincRNA||n.-1T>C|||||4990|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3392A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+819A>G||||||
1	768003	.	A	G	259.92	.	AC=20;ANN=G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:767946_768095|||||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3519A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+946A>G||||||
1	768009	.	A	G	59.2	.	AC=11;ANN=G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:767946_768095|||||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+952A>G||||||
1	768203	.	C	T	280.65	.	AC=12;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3719C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1146C>T||||||
1	768241	.	T	C	313.17	.	AC=21;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1184T>C||||||
1	768253	rs2977608	A	C	41066.57	.	AC=719;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3769A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1196A>C||||||
1	768360	.	C	T	894.11	.	AC=19;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1303C>T||||||
1	768390	.	C	T	22.03	.	AC=2;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1333C>T||||||
1	768400	.	G	C	153.57	.	AC=14;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3916G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1343G>C||||||
1	768423	.	C	T	99.69	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3939C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1366C>T||||||
1	768448	rs12562034	G	A	12721.86	.	AC=231;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3964G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1391G>A||||||
1	768452	.	T	C	365.29	.	AC=23;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+3968T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1395T>C||||||
1	768541	.	C	G	46.8	.	AC=4;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4057C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1484C>G||||||
1	768556	.	A	G	121.45	.	AC=6;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4072A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1499A>G||||||
1	768557	.	C	T	31.01	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4073C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1500C>T||||||
1	768589	.	A	C,G	76.0	.	AC=1;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4105A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4105A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1532A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1532A>G||||||
1	768595	.	T	C	285.1	.	AC=22;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4111T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1538T>C||||||
1	768663	rs7524119	C	T	1034.19	.	AC=38;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4179C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1606C>T||||||
1	768665	.	T	A	252.06	.	AC=5;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4181T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1608T>A||||||
1	768680	.	C	T	535.16	.	AC=10;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4196C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1623C>T||||||
1	768729	.	C	T	733.19	.	AC=42;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4245C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1672C>T||||||
1	768746	.	A	G	51.2	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4262A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1689A>G||||||
1	768758	.	C	G	81.55	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4274C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1701C>G||||||
1	768805	.	C	A	124.55	.	AC=17;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4321C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1748C>A||||||
1	768819	rs12562811	C	T	5386.32	.	AC=111;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4335C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1762C>T||||||
1	768835	.	C	T	58.59	.	AC=9;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4351C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1778C>T||||||
1	768913	.	T	G	895.77	.	AC=43;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4429T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1856T>G||||||
1	768976	.	T	G	472.57	.	AC=33;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4492T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1919T>G||||||
1	768978	rs117134563	G	C	308.89	.	AC=32;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4494G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1921G>C||||||
1	769040	.	A	T	473.09	.	AC=20;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4556A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+1983A>T||||||
1	769118	.	A	G	512.78	.	AC=27;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4634A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2061A>G||||||
1	769197	rs7524725	C	T	388.72	.	AC=26;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2140C>T||||||
1	769198	.	G	A	6.25	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4714G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2141G>A||||||
1	769223	rs60320384	C	G	9853.17	.	AC=154;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4739C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2166C>G||||||
1	769224	.	G	A	70.27	.	AC=2;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4740G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2167G>A||||||
1	769240	.	G	A	176.9	.	AC=22;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2183G>A||||||
1	769271	.	C	T	197.67	.	AC=19;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4787C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2214C>T||||||
1	769311	.	A	G	499.22	.	AC=32;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4827A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2254A>G||||||
1	769360	rs2519014	C	T	214.5	.	AC=26;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4876C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2303C>T||||||
1	769365	.	A	G	77.83	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4881A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2308A>G||||||
1	769374	.	G	A	620.48	.	AC=26;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2317G>A||||||
1	769481	.	G	A	42.9	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+4997G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2424G>A||||||
1	769551	rs2519012	C	T	1737.4	.	AC=66;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5067C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2494C>T||||||
1	769554	.	C	T	12.07	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5070C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2497C>T||||||
1	769562	.	G	A	90.4	.	AC=2;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5078G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2505G>A||||||
1	769582	.	C	T	279.23	.	AC=3;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5098C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2525C>T||||||
1	769612	.	C	T	52.59	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5128C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2555C>T||||||
1	769614	.	T	A	438.54	.	AC=23;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5130T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2557T>A||||||
1	769678	.	G	C	75.69	.	AC=2;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2621G>C||||||
1	769712	.	C	T	43.72	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2655C>T||||||
1	769779	rs114149225	G	C	1586.75	.	AC=73;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5295G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2722G>C||||||
1	769789	rs2519011	T	C	508.68	.	AC=33;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5305T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2732T>C||||||
1	769795	rs115156249	G	A	197.73	.	AC=6;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2738G>A||||||
1	769796	.	C	T	33.14	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5312C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2739C>T||||||
1	769829	rs2977607	C	A	49288.0	.	AC=945;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5345C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2772C>A||||||
1	769866	.	G	A	16.54	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2809G>A||||||
1	769869	.	A	G	1317.22	.	AC=74;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5385A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2812A>G||||||
1	769885	rs116706012	G	A	2468.47	.	AC=79;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5401G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2828G>A||||||
1	769886	rs2519010	C	T	129.48	.	AC=8;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5402C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2829C>T||||||
1	769898	rs2519009	C	T	256.61	.	AC=21;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5414C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2841C>T||||||
1	769962	.	C	T	2048.45	.	AC=60;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2905C>T||||||
1	769963	rs7518545	G	A	10334.45	.	AC=176;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5479G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2906G>A||||||
1	769981	.	A	G	132.32	.	AC=5;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5497A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+2924A>G||||||
1	770068	.	T	A	191.18	.	AC=12;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5584T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3011T>A||||||
1	770075	rs2977606	C	T	29948.12	.	AC=781;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5591C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3018C>T||||||
1	770085	.	G	C	836.56	.	AC=25;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5601G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3028G>C||||||
1	770128	.	C	T	1188.0	.	AC=74;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3071C>T||||||
1	770167	rs114084444	A	G	140.39	.	AC=5;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3110A>G||||||
1	770168	.	A	T	1249.93	.	AC=39;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5684A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3111A>T||||||
1	770181	.	A	G	70.68	.	AC=5;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3124A>G||||||
1	770185	.	G	C	16.2	.	AC=1;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5701G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3128G>C||||||
1	770197	.	C	T	397.34	.	AC=6;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5713C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3140C>T||||||
1	770216	rs2905040	G	C	34.41	.	AC=1;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5732G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3159G>C||||||
1	770249	.	T	A	13.75	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5765T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3192T>A||||||
1	770251	.	C	T	98.91	.	AC=2;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5767C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3194C>T||||||
1	770270	.	C	G	546.24	.	AC=33;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5786C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3213C>G||||||
1	770281	.	T	A	29.23	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5797T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3224T>A||||||
1	770290	.	C	T	308.17	.	AC=14;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5806C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3233C>T||||||
1	770314	.	T	C	753.55	.	AC=43;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5830T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3257T>C||||||
1	770345	rs111352149	A	C	452.08	.	AC=48;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5861A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3288A>C||||||
1	770359	.	C	T	53.06	.	AC=15;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5875C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3302C>T||||||
1	770377	rs112563271	A	T	6333.8	.	AC=117;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5893A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3320A>T||||||
1	770415	rs61768176	A	C	171.12	.	AC=23;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5931A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3358A>C||||||
1	770416	.	C	A	111.38	.	AC=2;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+5932C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3359C>A||||||
1	770504	.	C	G	188.54	.	AC=5;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6020C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3447C>G||||||
1	770514	.	C	T	127.33	.	AC=3;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6030C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3457C>T||||||
1	770517	.	C	T	154.02	.	AC=11;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.211+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.209+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6033C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3460C>T||||||
1	770560	.	A	G	30.27	.	AC=3;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6076A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6076A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-6020A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-6020A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6076A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6076A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6076A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6076A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6076A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3503A>G||||||
1	770568	rs3131943	A	G	21225.2	.	AC=616;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6084A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6084A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-6012A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-6012A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6084A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6084A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6084A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6084A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6084A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3511A>G||||||
1	770623	.	A	G	56.37	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6139A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6139A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5957A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5957A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6139A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6139A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6139A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6139A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6139A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3566A>G||||||
1	770691	.	C	A	58.13	.	AC=2;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5889C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5889C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3634C>A||||||
1	770720	.	G	A	721.44	.	AC=44;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6236G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6236G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5860G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5860G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6236G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6236G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6236G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6236G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6236G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3663G>A||||||
1	770735	.	A	G	2697.2	.	AC=80;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6251A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6251A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5845A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5845A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6251A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6251A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6251A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6251A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6251A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3678A>G||||||
1	770767	.	G	A	158.24	.	AC=6;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6283G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6283G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5813G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5813G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6283G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6283G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6283G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6283G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6283G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3710G>A||||||
1	770770	.	C	T	641.32	.	AC=29;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6286C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6286C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5810C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5810C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6286C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6286C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6286C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6286C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6286C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3713C>T||||||
1	770804	.	C	A	434.95	.	AC=28;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5776C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5776C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3747C>A||||||
1	770807	.	C	G	319.35	.	AC=15;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6323C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6323C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5773C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5773C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6323C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6323C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6323C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6323C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6323C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3750C>G||||||
1	770850	.	G	T	474.75	.	AC=32;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6366G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6366G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5730G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5730G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6366G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6366G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6366G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6366G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6366G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3793G>T||||||
1	770879	.	G	T	29.06	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6395G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6395G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5701G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5701G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6395G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6395G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6395G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6395G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6395G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3822G>T||||||
1	770886	.	G	A	860.42	.	AC=58;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6402G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6402G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5694G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5694G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6402G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6402G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6402G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6402G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6402G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3829G>A||||||
1	770905	.	A	G	61.01	.	AC=9;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5675A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5675A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6421A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3848A>G||||||
1	770918	.	T	G	4377.01	.	AC=235;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6434T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6434T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5662T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5662T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6434T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6434T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6434T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6434T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6434T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3861T>G||||||
1	770928	.	C	T	19.47	.	AC=5;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6444C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6444C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5652C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5652C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6444C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6444C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6444C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6444C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6444C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+3871C>T||||||
1	771060	.	G	A	213.87	.	AC=13;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5520G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5520G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4003G>A||||||
1	771062	rs117223761	T	A	556.95	.	AC=11;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6578T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6578T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5518T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5518T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6578T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6578T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6578T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6578T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6578T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4005T>A||||||
1	771063	rs118082689	C	A	599.99	.	AC=11;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6579C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6579C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5517C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5517C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6579C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6579C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6579C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6579C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6579C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4006C>A||||||
1	771086	.	T	G	382.92	.	AC=29;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6602T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6602T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5494T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5494T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6602T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6602T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6602T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6602T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6602T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4029T>G||||||
1	771153	.	G	C	556.39	.	AC=31;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6669G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6669G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5427G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5427G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6669G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6669G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6669G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6669G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6669G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4096G>C||||||
1	771319	.	T	C	1320.84	.	AC=42;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6835T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6835T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5261T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5261T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6835T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6835T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6835T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6835T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6835T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4262T>C||||||
1	771351	.	C	A	1239.11	.	AC=61;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6867C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6867C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5229C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5229C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6867C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6867C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6867C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6867C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6867C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4294C>A||||||
1	771357	.	C	T	29.36	.	AC=2;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5223C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5223C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4300C>T||||||
1	771410	.	C	T	22803.37	.	AC=540;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6926C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6926C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5170C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5170C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6926C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6926C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6926C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6926C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6926C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4353C>T||||||
1	771466	.	C	T	127.53	.	AC=6;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+6982C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+6982C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5114C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5114C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+6982C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+6982C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+6982C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+6982C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+6982C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4409C>T||||||
1	771508	.	C	A	281.91	.	AC=3;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7024C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7024C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5072C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5072C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7024C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7024C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7024C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7024C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7024C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4451C>A||||||
1	771521	rs116478144	A	G	1640.97	.	AC=34;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7037A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7037A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5059A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5059A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7037A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7037A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7037A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7037A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7037A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4464A>G||||||
1	771523	.	T	A	1431.09	.	AC=44;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7039T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7039T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5057T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5057T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7039T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7039T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7039T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7039T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7039T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4466T>A||||||
1	771540	.	C	G	853.68	.	AC=13;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7056C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7056C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5040C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5040C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7056C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7056C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7056C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7056C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7056C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4483C>G||||||
1	771547	.	T	C	160.45	.	AC=3;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7063T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7063T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5033T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5033T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7063T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7063T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7063T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7063T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7063T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4490T>C||||||
1	771549	.	A	G	66.47	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7065A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7065A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-5031A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-5031A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7065A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7065A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7065A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7065A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7065A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4492A>G||||||
1	771581	.	T	G	195.37	.	AC=14;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7097T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7097T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4999T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4999T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7097T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7097T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7097T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7097T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7097T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4524T>G||||||
1	771594	rs6661456	C	T	1383.08	.	AC=33;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4986C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4986C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4537C>T||||||
1	771657	.	G	A	98.91	.	AC=4;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7173G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7173G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4923G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4923G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7173G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7173G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7173G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7173G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7173G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4600G>A||||||
1	771668	.	A	G	1045.58	.	AC=63;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4611A>G||||||
1	771685	rs2519005	T	C	1579.38	.	AC=80;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7201T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7201T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4895T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4895T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7201T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7201T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7201T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7201T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7201T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4628T>C||||||
1	771688	rs2544250	G	A	66.59	.	AC=12;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7204G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7204G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4892G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4892G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7204G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7204G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7204G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7204G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7204G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4631G>A||||||
1	771700	.	G	A	37.84	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7216G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7216G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4880G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4880G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7216G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7216G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7216G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7216G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7216G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4643G>A||||||
1	771704	.	A	G	409.63	.	AC=11;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7220A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7220A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4876A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4876A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7220A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7220A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7220A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7220A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7220A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4647A>G||||||
1	771732	.	C	G	99.56	.	AC=14;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7248C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7248C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4848C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4848C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7248C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7248C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7248C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7248C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7248C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4675C>G||||||
1	771786	rs6666560	A	G	548.14	.	AC=43;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7302A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7302A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4794A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4794A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7302A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7302A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7302A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7302A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7302A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.73+4729A>G||||||
1	771823	rs2977605	T	C	21304.64	.	AC=643;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7339T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7339T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4757T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7339T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7339T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7339T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7339T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7339T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4757T>C||||||
1	771888	.	T	A	76.68	.	AC=5;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7404T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7404T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4692T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4692T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7404T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7404T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7404T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7404T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7404T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4692T>A||||||
1	771925	.	G	A	20.24	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7441G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7441G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4655G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4655G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7441G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7441G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7441G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7441G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7441G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4655G>A||||||
1	771950	rs2544252	C	A	777.39	.	AC=39;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7466C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7466C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4630C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4630C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7466C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7466C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7466C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7466C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7466C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4630C>A||||||
1	771962	.	C	T	188.65	.	AC=12;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4618C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4618C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4618C>T||||||
1	771967	rs59066358	G	A	16456.08	.	AC=209;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4613G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4613G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4613G>A||||||
1	772016	.	G	A	230.0	.	AC=3;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7532G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7532G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7532G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7532G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7532G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7532G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7532G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4564G>A||||||
1	772019	.	C	G	249.86	.	AC=2;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7535C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7535C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4561C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4561C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7535C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7535C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7535C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7535C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7535C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4561C>G||||||
1	772021	.	C	T	147.35	.	AC=3;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7537C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7537C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4559C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4559C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7537C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7537C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7537C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7537C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7537C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4559C>T||||||
1	772028	rs6700874	G	A	6151.14	.	AC=69;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7544G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7544G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4552G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4552G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7544G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7544G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7544G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7544G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7544G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4552G>A||||||
1	772046	rs3871686	C	T	342.57	.	AC=21;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4534C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4534C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4534C>T||||||
1	772061	.	C	G	464.14	.	AC=32;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7577C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7577C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4519C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4519C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7577C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7577C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7577C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7577C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7577C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4519C>G||||||
1	772116	.	C	G	643.37	.	AC=34;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7632C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7632C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4464C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4464C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7632C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7632C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7632C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7632C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7632C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4464C>G||||||
1	772148	.	G	A	159.59	.	AC=3;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7664G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7664G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4432G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4432G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7664G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7664G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7664G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7664G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7664G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4432G>A||||||
1	772172	.	C	G	215.04	.	AC=6;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7688C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7688C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4408C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4408C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7688C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7688C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7688C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7688C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7688C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4408C>G||||||
1	772177	rs2519004	T	C	1071.43	.	AC=46;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7693T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7693T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4403T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4403T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7693T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7693T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7693T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7693T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7693T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4403T>C||||||
1	772307	rs113944964	T	C	234.12	.	AC=14;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7823T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7823T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4273T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4273T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7823T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7823T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7823T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7823T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7823T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4273T>C||||||
1	772323	.	G	A	362.06	.	AC=21;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4257G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4257G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4257G>A||||||
1	772326	rs111403488	A	G	44.22	.	AC=3;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4254A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4254A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4254A>G||||||
1	772334	.	C	T	255.49	.	AC=4;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7850C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7850C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4246C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4246C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7850C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7850C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7850C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7850C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7850C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4246C>T||||||
1	772337	.	T	G	662.97	.	AC=32;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7853T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7853T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4243T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4243T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7853T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7853T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7853T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7853T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7853T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4243T>G||||||
1	772392	.	A	T	267.21	.	AC=7;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7908A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7908A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4188A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4188A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7908A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7908A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7908A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7908A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7908A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4188A>T||||||
1	772396	.	A	G	297.97	.	AC=11;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4184A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4184A>G||||||
1	772397	.	T	C	35.78	.	AC=1;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7913T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7913T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4183T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4183T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7913T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7913T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7913T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7913T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7913T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4183T>C||||||
1	772417	.	T	C	629.36	.	AC=35;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7933T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7933T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4163T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4163T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7933T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7933T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7933T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7933T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7933T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4163T>C||||||
1	772430	.	G	A	6462.74	.	AC=88;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7946G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7946G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4150G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7946G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7946G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7946G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7946G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7946G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4150G>A||||||
1	772437	.	C	T	479.97	.	AC=20;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7953C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7953C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4143C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4143C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7953C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7953C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7953C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7953C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7953C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4143C>T||||||
1	772438	.	G	A	818.77	.	AC=17;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7954G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7954G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4142G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4142G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7954G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7954G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7954G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7954G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7954G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4142G>A||||||
1	772449	.	A	G	33.25	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+7965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+7965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4131A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4131A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+7965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+7965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+7965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+7965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+7965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4131A>G||||||
1	772534	.	G	C	23.83	.	AC=2;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8050G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8050G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-4046G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-4046G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8050G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8050G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8050G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8050G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8050G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-4046G>C||||||
1	772606	.	G	A	961.78	.	AC=42;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3974G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3974G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3974G>A||||||
1	772614	rs74045275	T	C	72.29	.	AC=2;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8130T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8130T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3966T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3966T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8130T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8130T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8130T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8130T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8130T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3966T>C||||||
1	772650	.	G	A	218.96	.	AC=13;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8166G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8166G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3930G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3930G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8166G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8166G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8166G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8166G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8166G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3930G>A||||||
1	772717	.	A	G	620.16	.	AC=25;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8233A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8233A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3863A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3863A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8233A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8233A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8233A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8233A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8233A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3863A>G||||||
1	772755	rs2905039	A	C	51373.76	.	AC=896;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8271A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8271A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3825A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3825A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8271A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8271A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8271A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8271A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8271A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3825A>C||||||
1	772764	.	C	A	52.1	.	AC=3;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8280C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8280C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3816C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3816C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8280C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8280C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8280C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8280C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8280C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3816C>A||||||
1	772808	.	C	T	1795.43	.	AC=50;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8324C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8324C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3772C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3772C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8324C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8324C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8324C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8324C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8324C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3772C>T||||||
1	772878	.	G	A	381.95	.	AC=6;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8394G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8394G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3702G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3702G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8394G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8394G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8394G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8394G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8394G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3702G>A||||||
1	772908	.	G	A	41.69	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8424G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8424G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3672G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3672G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8424G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8424G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8424G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8424G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8424G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3672G>A||||||
1	772921	.	C	A	476.85	.	AC=22;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8437C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8437C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3659C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3659C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8437C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8437C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8437C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8437C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8437C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3659C>A||||||
1	772925	.	C	G	236.66	.	AC=14;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8441C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8441C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3655C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3655C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8441C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8441C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8441C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8441C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8441C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3655C>G||||||
1	772927	rs116390263	C	T	457.77	.	AC=17;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8443C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8443C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3653C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3653C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8443C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8443C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8443C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8443C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8443C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3653C>T||||||
1	772955	.	T	G	1553.69	.	AC=57;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8471T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8471T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3625T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3625T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8471T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8471T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8471T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8471T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8471T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3625T>G||||||
1	772981	.	G	A	645.53	.	AC=27;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3599G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3599G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3599G>A||||||
1	773007	.	G	A	1986.39	.	AC=69;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8523G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8523G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3573G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3573G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8523G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8523G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8523G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8523G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8523G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3573G>A||||||
1	773028	.	T	G	1679.46	.	AC=45;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8544T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8544T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3552T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3552T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8544T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8544T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8544T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8544T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8544T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3552T>G||||||
1	773070	.	T	G	699.86	.	AC=18;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8586T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8586T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3510T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3510T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8586T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8586T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8586T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8586T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8586T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3510T>G||||||
1	773087	.	C	A	278.21	.	AC=15;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8603C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8603C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3493C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3493C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8603C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8603C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8603C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8603C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8603C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3493C>A||||||
1	773091	.	C	T	155.02	.	AC=12;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8607C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8607C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3489C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3489C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8607C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8607C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8607C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8607C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8607C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3489C>T||||||
1	773100	.	C	T	1000.3	.	AC=45;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8616C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8616C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3480C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3480C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8616C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8616C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8616C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8616C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8616C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3480C>T||||||
1	773106	rs115616822	G	A	651.68	.	AC=16;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8622G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8622G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3474G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3474G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8622G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8622G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8622G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8622G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8622G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3474G>A||||||
1	773124	.	T	C	323.25	.	AC=13;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8640T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8640T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3456T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3456T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8640T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8640T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8640T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8640T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8640T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3456T>C||||||
1	773136	.	G	T	336.82	.	AC=11;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8652G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8652G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3444G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3444G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8652G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8652G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8652G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8652G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8652G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3444G>T||||||
1	773169	.	C	T	243.22	.	AC=18;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8685C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8685C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3411C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3411C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8685C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8685C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8685C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8685C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8685C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3411C>T||||||
1	773170	.	G	A	383.21	.	AC=11;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8686G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8686G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3410G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3410G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8686G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8686G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8686G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8686G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8686G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3410G>A||||||
1	773184	rs116965135	G	A	122.63	.	AC=4;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8700G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8700G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3396G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3396G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8700G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8700G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8700G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8700G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8700G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3396G>A||||||
1	773186	.	C	A	76.3	.	AC=17;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8702C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8702C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3394C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3394C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8702C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8702C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8702C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8702C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8702C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3394C>A||||||
1	773217	.	A	T	80.68	.	AC=16;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8733A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8733A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3363A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3363A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8733A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8733A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8733A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8733A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8733A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3363A>T||||||
1	773257	.	G	A	170.72	.	AC=14;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8773G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8773G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3323G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3323G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8773G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8773G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8773G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8773G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8773G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3323G>A||||||
1	773270	.	G	T	946.51	.	AC=19;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8786G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8786G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3310G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3310G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8786G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8786G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8786G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8786G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8786G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3310G>T||||||
1	773330	.	C	G	19.06	.	AC=2;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8846C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8846C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3250C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3250C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8846C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8846C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8846C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8846C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8846C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3250C>G||||||
1	773394	.	G	C	205.11	.	AC=3;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8910G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8910G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3186G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3186G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8910G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8910G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8910G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8910G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8910G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3186G>C||||||
1	773430	.	A	G	402.62	.	AC=22;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8946A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8946A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3150A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3150A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8946A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8946A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8946A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8946A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8946A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3150A>G||||||
1	773476	rs115359380	G	T	1079.44	.	AC=21;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3104G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3104G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3104G>T||||||
1	773483	.	G	A	782.9	.	AC=39;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+8999G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+8999G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3097G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3097G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+8999G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+8999G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+8999G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+8999G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+8999G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3097G>A||||||
1	773492	.	G	A	49.73	.	AC=2;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9008G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9008G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3088G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3088G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9008G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9008G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9008G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9008G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9008G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3088G>A||||||
1	773503	.	C	T	232.47	.	AC=9;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9019C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9019C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3077C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3077C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9019C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9019C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9019C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9019C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9019C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3077C>T||||||
1	773538	.	C	T	147.41	.	AC=11;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9054C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9054C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-3042C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-3042C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9054C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9054C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9054C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9054C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9054C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-3042C>T||||||
1	773600	.	G	A	930.76	.	AC=35;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9116G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9116G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2980G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2980G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9116G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9116G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9116G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9116G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9116G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2980G>A||||||
1	773601	.	T	C	67.75	.	AC=1;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2979T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2979T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2979T>C||||||
1	773634	.	A	T	650.69	.	AC=16;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9150A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9150A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2946A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2946A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9150A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9150A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9150A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9150A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9150A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2946A>T||||||
1	773669	.	C	A	1048.48	.	AC=41;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9185C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9185C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2911C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2911C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9185C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9185C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9185C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9185C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9185C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2911C>A||||||
1	773692	.	A	G	771.68	.	AC=12;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9208A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9208A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2888A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2888A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9208A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9208A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9208A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9208A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9208A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2888A>G||||||
1	773713	.	C	G	113.02	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9229C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.217+9229C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2867C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2867C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.205+9229C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.179+9229C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.179+9229C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.42+9229C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.42+9229C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2867C>G||||||
1	773770	.	T	C	15.31	.	AC=1;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9286T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9264T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2810T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2810T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9264T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9264T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9264T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9264T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9264T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2810T>C||||||
1	773784	.	G	T	47.54	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9300G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9250G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2796G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2796G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9250G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9250G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9250G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9250G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9250G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2796G>T||||||
1	773788	.	A	G	13.03	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9304A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9246A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2792A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2792A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9246A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9246A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9246A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9246A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9246A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2792A>G||||||
1	773837	.	A	C,T	1069.7	.	AC=24;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9353A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9353A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9197A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9197A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2743A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2743A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2743A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2743A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9197A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9197A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9197A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9197A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9197A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9197A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9197A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9197A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9197A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9197A>T||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2743A>C||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2743A>T||||||
1	773861	.	T	A	662.06	.	AC=12;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9377T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9173T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2719T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2719T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9173T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9173T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9173T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9173T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9173T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2719T>A||||||
1	773885	.	A	T	100.29	.	AC=8;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9401A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9149A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2695A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2695A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9149A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9149A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9149A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9149A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9149A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2695A>T||||||
1	773888	.	A	G	512.56	.	AC=26;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9404A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9146A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2692A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2692A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9146A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9146A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9146A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9146A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9146A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2692A>G||||||
1	773919	rs3964452	C	T	849.36	.	AC=45;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9435C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9115C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2661C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2661C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9115C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9115C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9115C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9115C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9115C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2661C>T||||||
1	773926	rs116303978	C	T	461.1	.	AC=11;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9442C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9108C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2654C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2654C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9108C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9108C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9108C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9108C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9108C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2654C>T||||||
1	773998	rs74045277	C	T	1810.81	.	AC=29;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9514C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9036C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2582C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2582C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9036C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9036C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9036C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9036C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9036C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2582C>T||||||
1	774014	.	G	A	164.67	.	AC=11;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9530G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9020G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2566G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2566G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9020G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9020G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9020G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9020G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9020G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2566G>A||||||
1	774018	.	T	G	96.49	.	AC=9;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9534T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9016T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2562T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2562T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9016T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9016T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9016T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9016T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9016T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2562T>G||||||
1	774022	.	A	T	102.7	.	AC=8;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9538A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-9012A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2558A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2558A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-9012A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-9012A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-9012A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-9012A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-9012A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2558A>T||||||
1	774036	rs116788021	C	T	2265.39	.	AC=26;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9552C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8998C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2544C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8998C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8998C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8998C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8998C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8998C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2544C>T||||||
1	774041	rs2909594	C	G	610.7	.	AC=28;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9557C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8993C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2539C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2539C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8993C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8993C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8993C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8993C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8993C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2539C>G||||||
1	774046	.	C	T	6.36	.	AC=2;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9562C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8988C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2534C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2534C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8988C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8988C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8988C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8988C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8988C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2534C>T||||||
1	774047	rs12022420	G	A	9061.21	.	AC=108;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9563G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2533G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2533G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2533G>A||||||
1	774069	.	A	G	46.62	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9585A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2511A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2511A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2511A>G||||||
1	774125	rs2519002	A	C	1491.13	.	AC=44;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9641A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8909A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2455A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2455A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8909A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8909A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8909A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8909A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8909A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2455A>C||||||
1	774161	.	T	C	96.68	.	AC=2;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9677T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8873T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2419T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2419T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8873T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8873T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8873T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8873T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8873T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2419T>C||||||
1	774179	.	T	C	927.44	.	AC=24;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9695T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8855T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2401T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2401T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8855T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8855T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8855T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8855T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8855T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2401T>C||||||
1	774180	.	C	T	234.59	.	AC=19;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9696C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8854C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2400C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2400C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8854C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8854C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8854C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8854C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8854C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2400C>T||||||
1	774197	rs2544260	A	T	2222.0	.	AC=47;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9713A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8837A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2383A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2383A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8837A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8837A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8837A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8837A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8837A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2383A>T||||||
1	774251	.	T	C	24.17	.	AC=3;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9767T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8783T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2329T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2329T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8783T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8783T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8783T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8783T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8783T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2329T>C||||||
1	774333	.	A	G	51.01	.	AC=5;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9849A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8701A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2247A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2247A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8701A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8701A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8701A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8701A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8701A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2247A>G||||||
1	774363	rs12563150	A	G	5597.31	.	AC=92;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9879A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8671A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2217A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2217A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8671A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8671A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8671A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8671A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8671A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2217A>G||||||
1	774374	.	G	A	275.8	.	AC=4;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9890G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8660G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2206G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2206G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8660G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8660G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8660G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8660G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8660G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2206G>A||||||
1	774391	.	G	T	611.1	.	AC=11;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9907G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8643G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2189G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2189G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8643G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8643G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8643G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8643G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8643G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2189G>T||||||
1	774409	rs2519001	A	G	984.61	.	AC=43;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+9925A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8625A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2171A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2171A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8625A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8625A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8625A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8625A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8625A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2171A>G||||||
1	774511	.	T	G	79.98	.	AC=13;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10027T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8523T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-2069T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-2069T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8523T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8523T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8523T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8523T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8523T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-2069T>G||||||
1	774653	rs35804977	A	G	502.37	.	AC=25;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10169A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8381A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1927A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1927A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8381A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8381A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8381A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8381A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8381A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1927A>G||||||
1	774664	rs34581065	G	A	319.16	.	AC=19;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10180G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8370G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1916G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1916G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8370G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8370G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8370G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8370G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8370G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1916G>A||||||
1	774708	.	C	A	116.49	.	AC=5;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10224C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8326C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1872C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1872C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8326C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8326C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8326C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8326C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8326C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1872C>A||||||
1	774722	.	A	C	2816.2	.	AC=153;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10238A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8312A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1858A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1858A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8312A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8312A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8312A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8312A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8312A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1858A>C||||||
1	774729	.	A	G	593.5	.	AC=22;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10245A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8305A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1851A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1851A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8305A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8305A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8305A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8305A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8305A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1851A>G||||||
1	774736	rs28830877	A	C	45217.35	.	AC=829;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10252A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8298A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1844A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1844A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8298A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8298A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8298A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8298A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8298A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1844A>C||||||
1	774743	.	G	A	150.65	.	AC=15;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10259G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8291G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1837G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1837G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8291G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8291G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8291G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8291G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8291G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1837G>A||||||
1	774757	.	A	G	252.96	.	AC=20;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10273A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8277A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1823A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1823A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8277A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8277A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8277A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8277A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8277A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1823A>G||||||
1	774760	.	C	T	329.07	.	AC=15;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10276C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8274C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1820C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1820C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8274C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8274C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8274C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8274C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8274C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1820C>T||||||
1	774761	.	G	A	528.25	.	AC=49;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10277G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8273G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1819G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1819G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8273G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8273G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8273G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8273G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8273G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1819G>A||||||
1	774762	.	C	T	17.22	.	AC=2;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10278C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8272C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1818C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1818C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8272C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8272C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8272C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8272C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8272C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1818C>T||||||
1	774785	rs28873693	G	A	45356.62	.	AC=834;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10301G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1795G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1795G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1795G>A||||||
1	774823	rs56353825	A	T	10.75	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10339A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8211A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1757A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1757A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8211A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8211A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8211A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8211A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8211A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1757A>T||||||
1	774827	rs55839859	A	G	39.78	.	AC=10;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10343A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1753A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1753A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1753A>G||||||
1	774835	.	A	G	54.67	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10351A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8199A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1745A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1745A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8199A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8199A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8199A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8199A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8199A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1745A>G||||||
1	774837	rs56252155	T	A	1251.78	.	AC=67;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10353T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8197T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1743T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1743T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8197T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8197T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8197T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8197T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8197T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1743T>A||||||
1	774869	rs55994826	G	A	107.47	.	AC=19;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10385G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8165G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1711G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1711G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8165G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8165G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8165G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8165G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8165G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1711G>A||||||
1	774874	rs28810152	A	C	8990.47	.	AC=319;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10390A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8160A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1706A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1706A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8160A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8160A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8160A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8160A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8160A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1706A>C||||||
1	774883	.	G	A	5252.07	.	AC=177;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10399G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8151G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1697G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1697G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8151G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8151G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8151G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8151G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8151G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1697G>A||||||
1	774897	.	A	G	66.95	.	AC=2;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10413A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8137A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1683A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8137A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8137A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8137A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8137A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8137A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1683A>G||||||
1	774900	rs28797844	C	G	867.68	.	AC=59;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10416C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8134C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1680C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1680C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8134C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8134C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8134C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8134C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8134C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1680C>G||||||
1	774923	rs28769076	G	C	32941.54	.	AC=715;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10439G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8111G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1657G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1657G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8111G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8111G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8111G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8111G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8111G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1657G>C||||||
1	774944	.	C	G	10.76	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10460C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8090C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1636C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1636C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8090C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8090C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8090C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8090C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8090C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1636C>G||||||
1	774953	.	G	A	997.8	.	AC=46;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10469G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8081G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1627G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1627G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8081G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8081G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8081G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8081G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8081G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1627G>A||||||
1	774970	.	C	G	613.24	.	AC=41;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10486C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8064C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1610C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1610C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8064C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8064C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8064C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8064C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8064C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1610C>G||||||
1	774981	.	G	A	19.39	.	AC=9;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8053G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1599G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1599G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8053G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8053G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8053G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8053G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8053G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1599G>A||||||
1	774995	.	G	A	156.43	.	AC=24;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10511G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8039G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1585G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1585G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8039G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8039G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8039G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8039G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8039G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1585G>A||||||
1	774999	.	G	A	629.24	.	AC=57;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10515G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-8035G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1581G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1581G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-8035G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-8035G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-8035G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-8035G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-8035G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1581G>A||||||
1	775071	.	G	A	21.58	.	AC=1;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10587G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7963G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1509G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1509G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7963G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7963G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7963G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7963G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7963G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1509G>A||||||
1	775095	rs2519000	A	G	374.31	.	AC=33;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10611A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7939A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1485A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1485A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7939A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7939A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7939A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7939A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7939A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1485A>G||||||
1	775098	rs2518999	A	T	61.57	.	AC=9;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10614A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7936A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1482A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1482A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7936A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7936A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7936A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7936A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7936A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1482A>T||||||
1	775125	.	C	T	2690.88	.	AC=53;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10641C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7909C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1455C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1455C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7909C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7909C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7909C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7909C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7909C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1455C>T||||||
1	775135	.	G	C	2362.93	.	AC=46;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10651G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7899G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1445G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1445G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7899G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7899G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7899G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7899G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7899G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1445G>C||||||
1	775145	.	G	T	935.77	.	AC=18;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10661G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7889G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1435G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1435G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7889G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7889G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7889G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7889G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7889G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1435G>T||||||
1	775168	.	G	A	88.04	.	AC=3;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10684G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7866G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1412G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1412G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7866G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7866G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7866G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7866G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7866G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1412G>A||||||
1	775176	.	A	G	508.92	.	AC=18;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10692A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7858A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1404A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1404A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7858A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7858A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7858A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7858A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7858A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1404A>G||||||
1	775181	rs61768182	A	G	16156.38	.	AC=235;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10697A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7853A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1399A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1399A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7853A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7853A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7853A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7853A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7853A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1399A>G||||||
1	775222	.	C	G	174.29	.	AC=7;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10738C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7812C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1358C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1358C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7812C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7812C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7812C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7812C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7812C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1358C>G||||||
1	775256	rs113609103	T	G	403.5	.	AC=35;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10772T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7778T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1324T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1324T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7778T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7778T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7778T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7778T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7778T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1324T>G||||||
1	775263	.	C	T	26.06	.	AC=8;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10779C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7771C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1317C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1317C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7771C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7771C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7771C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7771C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7771C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1317C>T||||||
1	775278	.	C	T	722.12	.	AC=43;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10794C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7756C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1302C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1302C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7756C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7756C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7756C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7756C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7756C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1302C>T||||||
1	775311	.	T	C	253.52	.	AC=19;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10827T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1269T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1269T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1269T>C||||||
1	775357	.	C	T	383.72	.	AC=19;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10873C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7677C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1223C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1223C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7677C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7677C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7677C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7677C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7677C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1223C>T||||||
1	775381	.	G	A	1081.57	.	AC=45;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10897G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1199G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1199G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1199G>A||||||
1	775404	.	T	C	27.99	.	AC=3;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10920T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7630T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1176T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1176T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7630T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7630T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7630T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7630T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7630T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1176T>C||||||
1	775426	rs2905037	G	A	70402.53	.	AC=980;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10942G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7608G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1154G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1154G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7608G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7608G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7608G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7608G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7608G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1154G>A||||||
1	775470	.	G	A	834.0	.	AC=40;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+10986G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1110G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1110G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1110G>A||||||
1	775499	.	C	T	67.68	.	AC=7;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11015C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7535C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1081C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1081C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7535C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7535C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7535C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7535C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7535C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1081C>T||||||
1	775501	.	C	T	175.79	.	AC=4;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11017C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1079C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1079C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1079C>T||||||
1	775566	.	C	T	702.85	.	AC=31;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11082C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7468C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1014C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1014C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7468C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7468C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7468C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7468C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7468C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1014C>T||||||
1	775573	rs74045278	G	T	6515.38	.	AC=112;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11089G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7461G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-1007G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-1007G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7461G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7461G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7461G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7461G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7461G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-1007G>T||||||
1	775584	rs74045279	G	A	2013.07	.	AC=84;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11100G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7450G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-996G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-996G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7450G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7450G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7450G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7450G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7450G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-996G>A||||||
1	775591	.	A	G	25.15	.	AC=2;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11107A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-989A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-989A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-989A>G||||||
1	775607	rs111853383	T	G	754.4	.	AC=41;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11123T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7427T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-973T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-973T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7427T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7427T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7427T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7427T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7427T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-973T>G||||||
1	775637	.	C	T	571.13	.	AC=17;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11153C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7397C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-943C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-943C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7397C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7397C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7397C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7397C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7397C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-943C>T||||||
1	775646	.	A	C	48.85	.	AC=2;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11162A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7388A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-934A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-934A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7388A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7388A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7388A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7388A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7388A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-934A>C||||||
1	775648	.	A	C	89.99	.	AC=15;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11164A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7386A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-932A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-932A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7386A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7386A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7386A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7386A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7386A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-932A>C||||||
1	775659	rs2905035	A	G	40241.27	.	AC=806;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11175A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7375A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-921A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-921A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7375A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7375A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7375A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7375A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7375A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-921A>G||||||
1	775683	.	T	G	116.53	.	AC=15;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11199T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7351T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-897T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-897T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7351T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7351T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7351T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7351T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7351T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-897T>G||||||
1	775781	.	T	C	269.43	.	AC=35;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11297T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-799T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-799T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-799T>C||||||
1	775833	.	G	A	107.96	.	AC=4;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11349G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7201G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-747G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-747G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7201G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7201G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7201G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7201G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7201G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-747G>A||||||
1	775854	.	A	G	922.52	.	AC=40;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11370A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7180A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-726A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-726A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7180A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7180A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7180A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7180A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7180A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-726A>G||||||
1	775895	.	G	C	840.1	.	AC=19;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.270+11411G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7139G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-685G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-685G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7139G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7139G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7139G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7139G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7139G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-685G>C||||||
1	775924	.	C	T	166.38	.	AC=7;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11383C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-656C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-656C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-656C>T||||||
1	775998	.	C	G	894.88	.	AC=49;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11309C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7036C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-582C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-582C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7036C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7036C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7036C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7036C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7036C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-582C>G||||||
1	776020	.	A	G	372.67	.	AC=28;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11287A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7014A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-560A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-560A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7014A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7014A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7014A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7014A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7014A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-560A>G||||||
1	776031	.	A	G	549.19	.	AC=37;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11276A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-7003A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-549A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-549A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-7003A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-7003A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-7003A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-7003A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-7003A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-549A>G||||||
1	776047	.	G	A	7.38	.	AC=2;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11260G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-533G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-533G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6987G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-533G>A||||||
1	776064	.	G	A	798.25	.	AC=19;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11243G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-516G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-516G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-516G>A||||||
1	776078	.	T	C	377.03	.	AC=10;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11229T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6956T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-502T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-502T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6956T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6956T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6956T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6956T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6956T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-502T>C||||||
1	776105	.	G	T	71.48	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11202G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6929G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-475G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-475G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6929G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6929G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6929G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6929G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6929G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-475G>T||||||
1	776112	rs114498757	T	C	4981.3	.	AC=61;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11195T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6922T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-468T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-468T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6922T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6922T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6922T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6922T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6922T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-468T>C||||||
1	776116	.	T	C	1998.46	.	AC=72;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11191T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6918T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-464T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-464T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6918T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6918T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6918T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6918T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6918T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-464T>C||||||
1	776163	.	A	C	782.13	.	AC=44;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11144A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6871A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-417A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-417A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6871A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6871A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6871A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6871A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6871A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-417A>C||||||
1	776210	.	C	T	24.03	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11097C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6824C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-370C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-370C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6824C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6824C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6824C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6824C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6824C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-370C>T||||||
1	776213	.	C	T	160.68	.	AC=2;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11094C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6821C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-367C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-367C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6821C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6821C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6821C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6821C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6821C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-367C>T||||||
1	776235	.	G	A	413.3	.	AC=27;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11072G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6799G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-345G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-345G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6799G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6799G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6799G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6799G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6799G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-345G>A||||||
1	776291	.	G	A	505.2	.	AC=30;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-11016G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6743G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-289G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-289G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6743G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6743G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6743G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6743G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6743G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-289G>A||||||
1	776309	.	A	G	238.96	.	AC=25;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10998A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6725A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-271A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-271A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6725A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6725A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6725A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6725A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6725A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-271A>G||||||
1	776393	.	C	T	7147.28	.	AC=98;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10914C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6641C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-187C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-187C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6641C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6641C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6641C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6641C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6641C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-187C>T||||||
1	776394	.	G	A	7224.83	.	AC=101;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10913G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6640G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-186G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-186G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6640G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6640G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6640G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6640G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6640G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-186G>A||||||
1	776442	rs111552907	T	C	1337.0	.	AC=73;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10865T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6592T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-138T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-138T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6592T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6592T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6592T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6592T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6592T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-138T>C||||||
1	776458	.	C	T	8893.02	.	AC=140;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10849C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6576C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-122C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-122C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6576C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6576C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6576C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6576C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6576C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-122C>T||||||
1	776465	rs115048839	A	G	1794.87	.	AC=26;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10842A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6569A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-115A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-115A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6569A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6569A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6569A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6569A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6569A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-115A>G||||||
1	776470	.	C	T	367.71	.	AC=21;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10837C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6564C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-110C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6564C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6564C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6564C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6564C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6564C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-110C>T||||||
1	776499	.	A	G	719.44	.	AC=15;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10808A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6535A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-81A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-81A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6535A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6535A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6535A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6535A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6535A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-81A>G||||||
1	776520	.	A	G	266.87	.	AC=1;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10787A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6514A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-60A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-60A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6514A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6514A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6514A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6514A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6514A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-60A>G||||||
1	776546	rs12124819	A	G	18727.97	.	AC=227;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10761A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6488A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-34A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-34A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6488A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6488A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6488A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6488A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6488A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-34A>G||||||
1	776551	rs115451476	G	A	1055.04	.	AC=16;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10756G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-29G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-29G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6483G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-29G>A||||||
1	776556	.	C	T	231.86	.	AC=5;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10751C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-24C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-24C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6478C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-24C>T||||||
1	776561	.	A	G	70.46	.	AC=10;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10746A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6473A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-19A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-19A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6473A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6473A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6473A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6473A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6473A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-19A>G||||||
1	776567	rs116391921	G	T	233.67	.	AC=4;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10740G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6467G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|2/2|n.212-13G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|2/3|n.210-13G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6467G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6467G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6467G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6467G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6467G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|1/1|n.74-13G>T||||||
1	776582	rs117212271	A	G	1999.49	.	AC=24;ANN=G|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.214A>G||||||,G|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/4|n.212A>G||||||,G|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.76A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10725A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6452A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6452A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6452A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6452A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6452A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6452A>G||||||
1	776603	.	T	C	169.83	.	AC=14;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10704T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6431T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6431T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6431T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6431T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6431T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6431T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.235T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/4|n.233T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.97T>C||||||
1	776646	rs117622443	G	A	215.4	.	AC=2;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10661G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6388G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6388G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6388G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6388G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6388G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6388G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.278G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/4|n.276G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.140G>A||||||
1	776655	.	C	T	449.41	.	AC=37;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10652C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6379C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6379C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6379C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6379C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6379C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6379C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.287C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/4|n.285C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.149C>T||||||
1	776669	.	G	A	96.66	.	AC=9;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10638G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6365G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6365G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6365G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6365G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6365G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6365G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.301G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/4|n.299G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.163G>A||||||
1	776712	.	T	C	93.41	.	AC=14;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10595T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6322T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6322T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6322T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6322T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6322T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6322T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.344T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/4|n.342T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.206T>C||||||
1	776768	.	A	C	177.96	.	AC=18;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10539A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6266A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+15A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6266A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6266A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6266A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6266A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6266A>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.400A>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.262A>C||||||
1	776814	.	C	G	916.21	.	AC=28;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10493C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6220C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+61C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6220C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6220C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6220C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6220C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6220C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.446C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.308C>G||||||
1	776857	.	C	G	590.44	.	AC=35;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10450C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6177C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+104C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6177C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6177C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6177C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6177C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6177C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.489C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.351C>G||||||
1	776876	rs115018915	C	T	293.42	.	AC=6;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10431C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6158C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+123C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6158C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6158C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6158C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6158C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6158C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.508C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.370C>T||||||
1	776899	.	C	T	58.69	.	AC=1;ANN=T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10408C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6135C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+146C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6135C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6135C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6135C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6135C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6135C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.531C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.393C>T||||||
1	777003	.	G	A	534.85	.	AC=11;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10304G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6031G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+250G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6031G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6031G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6031G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6031G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6031G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.635G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.497G>A||||||
1	777016	.	T	A	489.98	.	AC=33;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10291T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-6018T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+263T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-6018T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-6018T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-6018T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-6018T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-6018T>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.648T>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.510T>A||||||
1	777064	.	G	A	974.93	.	AC=46;ANN=A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10243G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+311G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5970G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5970G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.696G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.558G>A||||||
1	777082	.	C	G	1013.4	.	AC=21;ANN=G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10225C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5952C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+329C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5952C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5952C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5952C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5952C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5952C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.714C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.576C>G||||||
1	777093	.	A	C	79.05	.	AC=2;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10214A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5941A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+340A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5941A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5941A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5941A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5941A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5941A>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.725A>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.587A>C||||||
1	777111	rs111642376	G	C	50.58	.	AC=9;ANN=C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10196G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5923G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+358G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5923G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5923G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5923G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5923G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5923G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA|3/3|n.743G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.605G>C||||||
1	777122	rs2980319	A	T	69218.72	.	AC=912;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>T|||||4|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10185A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5912A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+369A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5912A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5912A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5912A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5912A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5912A>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.616A>T||||||
1	777232	rs112618790	C	T	1972.46	.	AC=62;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||114|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10075C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5802C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+479C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5802C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5802C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5802C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5802C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5802C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.726C>T||||||
1	777237	.	C	A	1023.37	.	AC=26;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>A|||||119|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-10070C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5797C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+484C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5797C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5797C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5797C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5797C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5797C>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.731C>A||||||
1	777312	.	A	G	151.06	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||194|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9995A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5722A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+559A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5722A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5722A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5722A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5722A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5722A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.806A>G||||||
1	777318	.	C	T	1143.62	.	AC=24;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||200|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9989C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5716C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+565C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5716C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5716C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5716C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5716C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5716C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.812C>T||||||
1	777335	.	A	C	120.16	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>C|||||217|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9972A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5699A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+582A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5699A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5699A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5699A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5699A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5699A>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.829A>C||||||
1	777361	rs2980318	T	C	1546.54	.	AC=42;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||243|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9946T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5673T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+608T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5673T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5673T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5673T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5673T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5673T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.855T>C||||||
1	777380	.	T	C	184.31	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||262|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9927T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5654T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+627T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5654T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5654T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5654T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5654T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5654T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA|2/2|n.874T>C||||||
1	777438	.	A	G	6.5	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||320|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||38|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9869A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5596A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+685A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5596A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5596A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5596A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5596A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5596A>G||||||
1	777456	.	C	T	450.18	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||338|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||56|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9851C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5578C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+703C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5578C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5578C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5578C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5578C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5578C>T||||||
1	777513	.	G	A	524.62	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||395|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||113|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9794G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+760G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5521G>A||||||
1	777516	.	C	T	41.49	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||398|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||116|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9791C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5518C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+763C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5518C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5518C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5518C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5518C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5518C>T||||||
1	777636	.	C	T	511.79	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||518|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||236|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9671C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5398C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+883C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5398C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5398C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5398C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5398C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5398C>T||||||
1	777691	.	G	A	390.57	.	AC=27;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||573|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||291|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9616G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5343G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+938G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5343G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5343G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5343G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5343G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5343G>A||||||
1	777702	.	G	C	124.52	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>C|||||584|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>C|||||302|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9605G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5332G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+949G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5332G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5332G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5332G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5332G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5332G>C||||||
1	777826	.	G	A	30.61	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||708|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||426|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9481G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5208G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1073G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5208G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5208G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5208G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5208G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5208G>A||||||
1	777859	.	T	C	141.77	.	AC=15;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||741|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||459|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9448T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5175T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1106T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5175T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5175T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5175T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5175T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5175T>C||||||
1	777995	.	G	T	8.67	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>T|||||877|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>T|||||595|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9312G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5039G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1242G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5039G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5039G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5039G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5039G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5039G>T||||||
1	778231	rs2980317	G	C	162.45	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>C|||||1113|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>C|||||831|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9076G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4803G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1478G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4803G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4803G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4803G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4803G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4803G>C||||||
1	778298	.	A	G	224.25	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||1180|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||898|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-9009A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4736A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1545A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4736A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4736A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4736A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4736A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4736A>G||||||
1	778330	.	C	T	97.88	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||1212|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||930|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8977C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4704C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1577C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4704C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4704C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4704C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4704C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4704C>T||||||
1	778513	.	G	A	16.61	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||1395|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||1113|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8794G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1760G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4521G>A||||||
1	778529	.	C	G	107.01	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>G|||||1411|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>G|||||1129|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8778C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4505C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1776C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4505C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4505C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4505C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4505C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4505C>G||||||
1	778540	.	T	C	42.27	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||1422|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||1140|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8767T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1787T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4494T>C||||||
1	778569	rs2977615	A	G	46267.37	.	AC=959;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||1451|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1169|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8738A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4465A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1816A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4465A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4465A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4465A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4465A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4465A>G||||||
1	778645	.	C	T	4.24	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||1527|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||1245|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8662C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4389C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1892C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4389C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4389C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4389C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4389C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4389C>T||||||
1	778689	.	A	G	167.7	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||1571|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1289|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8618A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4345A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1936A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4345A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4345A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4345A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4345A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4345A>G||||||
1	778745	rs1055606	A	G	9987.18	.	AC=202;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||1627|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1345|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8562A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4289A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+1992A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4289A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4289A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4289A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4289A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4289A>G||||||
1	778855	.	T	A	464.73	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>A|||||1737|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>A|||||1455|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8452T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4179T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2102T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4179T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4179T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4179T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4179T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4179T>A||||||
1	778876	.	A	C	220.09	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>C|||||1758|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>C|||||1476|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8431A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4158A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2123A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4158A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4158A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4158A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4158A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4158A>C||||||
1	778946	.	T	A	92.73	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>A|||||1828|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>A|||||1546|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8361T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4088T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2193T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4088T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4088T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4088T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4088T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4088T>A||||||
1	778986	.	T	G	426.24	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>G|||||1868|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>G|||||1586|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8321T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4048T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2233T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4048T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4048T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4048T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4048T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4048T>G||||||
1	778987	rs116163732	C	A	229.15	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>A|||||1869|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>A|||||1587|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8320C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4047C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2234C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4047C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4047C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4047C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4047C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4047C>A||||||
1	779025	.	G	A	633.0	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||1907|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||1625|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8282G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-4009G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2272G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-4009G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-4009G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-4009G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-4009G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-4009G>A||||||
1	779085	.	A	G	638.31	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||1967|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1685|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8222A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3949A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2332A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3949A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3949A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3949A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3949A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3949A>G||||||
1	779107	.	C	T	63.18	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||1989|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||1707|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8200C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3927C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2354C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3927C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3927C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3927C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3927C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3927C>T||||||
1	779108	.	G	A	37.17	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||1990|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||1708|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8199G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3926G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2355G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3926G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3926G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3926G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3926G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3926G>A||||||
1	779146	.	G	C	205.98	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>C|||||2028|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>C|||||1746|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8161G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2393G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3888G>C||||||
1	779151	.	A	G	47.74	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||2033|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1751|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8156A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3883A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2398A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3883A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3883A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3883A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3883A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3883A>G||||||
1	779286	.	C	A	1917.54	.	AC=35;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>A|||||2168|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>A|||||1886|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-8021C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3748C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2533C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3748C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3748C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3748C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3748C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3748C>A||||||
1	779320	.	C	T	71.82	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||2202|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||1920|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7987C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3714C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2567C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3714C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3714C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3714C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3714C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3714C>T||||||
1	779322	rs4040617	A	G	25913.98	.	AC=260;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||2204|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1922|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7985A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3712A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2569A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3712A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3712A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3712A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3712A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3712A>G||||||
1	779356	.	C	T	11.69	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||2238|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||1956|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7951C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3678C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2603C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3678C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3678C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3678C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3678C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3678C>T||||||
1	779379	.	A	G	568.11	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||2261|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1979|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7928A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3655A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2626A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3655A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3655A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3655A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3655A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3655A>G||||||
1	779395	.	A	G	75.43	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||2277|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||1995|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7912A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3639A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2642A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3639A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3639A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3639A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3639A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3639A>G||||||
1	779418	.	C	A	41.94	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>A|||||2300|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>A|||||2018|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7889C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3616C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2665C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3616C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3616C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3616C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3616C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3616C>A||||||
1	779438	.	T	G	95.1	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>G|||||2320|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>G|||||2038|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7869T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3596T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2685T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3596T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3596T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3596T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3596T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3596T>G||||||
1	779744	.	T	G	435.4	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>G|||||2626|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>G|||||2344|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7563T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3290T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+2991T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3290T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3290T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3290T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3290T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3290T>G||||||
1	779821	.	C	T	181.08	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||2703|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||2421|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7486C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3213C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3068C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3213C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3213C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3213C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3213C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3213C>T||||||
1	779991	.	T	A	342.1	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>A|||||2873|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>A|||||2591|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7316T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3043T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3238T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3043T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3043T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3043T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3043T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3043T>A||||||
1	780027	rs2977613	G	T	56597.92	.	AC=1009;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>T|||||2909|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>T|||||2627|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7280G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-3007G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3274G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-3007G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-3007G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-3007G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-3007G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-3007G>T||||||
1	780078	.	T	A	94.52	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>A|||||2960|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>A|||||2678|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7229T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2956T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3325T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2956T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2956T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2956T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2956T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2956T>A||||||
1	780092	.	G	A	231.74	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||2974|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||2692|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7215G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2942G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3339G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2942G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2942G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2942G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2942G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2942G>A||||||
1	780146	.	G	C	98.54	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>C|||||3028|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>C|||||2746|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7161G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3393G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2888G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2888G>C||||||
1	780162	rs114226235	C	G	314.24	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>G|||||3044|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>G|||||2762|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7145C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2872C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3409C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2872C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2872C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2872C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2872C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2872C>G||||||
1	780191	.	A	G	504.86	.	AC=36;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||3073|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||2791|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7116A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2843A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3438A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2843A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2843A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2843A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2843A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2843A>G||||||
1	780229	rs12565032	T	C	2398.97	.	AC=94;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||3111|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||2829|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7078T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2805T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3476T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2805T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2805T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2805T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2805T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2805T>C||||||
1	780237	.	C	G	69.3	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>G|||||3119|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>G|||||2837|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7070C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2797C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3484C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2797C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2797C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2797C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2797C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2797C>G||||||
1	780239	.	G	A	7.6	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||3121|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||2839|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7068G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2795G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3486G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2795G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2795G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2795G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2795G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2795G>A||||||
1	780256	rs56978077	A	T	2641.33	.	AC=76;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>T|||||3138|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>T|||||2856|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7051A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2778A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3503A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2778A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2778A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2778A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2778A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2778A>T||||||
1	780262	.	G	A	8.27	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||3144|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||2862|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7045G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2772G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3509G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2772G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2772G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2772G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2772G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2772G>A||||||
1	780302	.	G	A	60.58	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||3184|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||2902|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-7005G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2732G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3549G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2732G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2732G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2732G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2732G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2732G>A||||||
1	780351	.	A	T	93.21	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>T|||||3233|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>T|||||2951|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6956A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2683A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3598A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2683A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2683A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2683A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2683A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2683A>T||||||
1	780367	.	A	C	107.02	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>C|||||3249|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>C|||||2967|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6940A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3614A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2667A>C||||||
1	780397	.	C	T	607.88	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||3279|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||2997|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6910C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2637C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3644C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2637C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2637C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2637C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2637C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2637C>T||||||
1	780424	.	T	C	71.38	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||3306|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||3024|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6883T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2610T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3671T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2610T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2610T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2610T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2610T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2610T>C||||||
1	780446	.	C	T	235.46	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||3328|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||3046|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6861C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2588C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3693C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2588C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2588C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2588C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2588C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2588C>T||||||
1	780458	.	A	G	635.08	.	AC=28;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||3340|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||3058|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6849A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3705A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2576A>G||||||
1	780531	.	A	G	243.81	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||3413|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||3131|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6776A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2503A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3778A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2503A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2503A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2503A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2503A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2503A>G||||||
1	780559	.	T	C	2989.67	.	AC=82;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||3441|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||3159|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6748T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2475T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3806T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2475T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2475T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2475T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2475T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2475T>C||||||
1	780591	.	A	G	33.43	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||3473|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||3191|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6716A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+3838A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2443A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2443A>G||||||
1	780782	.	A	G	647.96	.	AC=34;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||3664|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||3382|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6525A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2252A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4029A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2252A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2252A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2252A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2252A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2252A>G||||||
1	780785	rs2977612	T	A	59483.17	.	AC=878;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>A|||||3667|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>A|||||3385|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6522T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4032T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2249T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2249T>A||||||
1	780843	.	A	G	734.83	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||3725|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||3443|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6464A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2191A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4090A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2191A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2191A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2191A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2191A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2191A>G||||||
1	780854	.	T	G	263.82	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>G|||||3736|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>G|||||3454|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6453T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2180T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4101T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2180T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2180T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2180T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2180T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2180T>G||||||
1	780889	.	T	C	672.19	.	AC=36;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||3771|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||3489|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6418T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-2145T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4136T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-2145T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-2145T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-2145T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-2145T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-2145T>C||||||
1	781100	.	A	G	294.49	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||3982|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||3700|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-6207A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1934A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4347A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1934A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1934A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1934A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1934A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1934A>G||||||
1	781367	.	A	C	189.96	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>C|||||4249|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>C|||||3967|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5940A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4614A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1667A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1667A>C||||||
1	781369	.	A	G	5.66	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4251|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||3969|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5938A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1665A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4616A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1665A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1665A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1665A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1665A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1665A>G||||||
1	781372	.	C	T	63.94	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||4254|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||3972|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5935C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1662C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4619C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1662C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1662C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1662C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1662C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1662C>T||||||
1	781381	rs59460514	G	A	2032.18	.	AC=37;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||4263|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||3981|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5926G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4628G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1653G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1653G>A||||||
1	781458	.	G	T	178.2	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>T|||||4340|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>T|||||4058|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5849G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1576G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4705G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1576G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1576G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1576G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1576G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1576G>T||||||
1	781540	rs56220497	T	C	1974.87	.	AC=41;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||4422|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||4140|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5767T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4787T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1494T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1494T>C||||||
1	781548	.	C	A	208.5	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>A|||||4430|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>A|||||4148|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5759C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1486C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4795C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1486C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1486C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1486C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1486C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1486C>A||||||
1	781577	.	C	T	1412.82	.	AC=21;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||4459|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||4177|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5730C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1457C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4824C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1457C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1457C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1457C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1457C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1457C>T||||||
1	781581	.	C	T	925.75	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||4463|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||4181|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5726C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1453C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4828C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1453C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1453C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1453C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1453C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1453C>T||||||
1	781585	.	A	G	595.74	.	AC=31;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4467|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4185|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5722A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1449A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4832A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1449A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1449A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1449A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1449A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1449A>G||||||
1	781598	.	C	G	56.41	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>G|||||4480|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>G|||||4198|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5709C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1436C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4845C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1436C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1436C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1436C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1436C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1436C>G||||||
1	781642	.	C	T	1199.51	.	AC=24;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||4524|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||4242|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5665C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1392C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4889C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1392C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1392C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1392C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1392C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1392C>T||||||
1	781643	.	A	G	1864.84	.	AC=56;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4525|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4243|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5664A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1391A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4890A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1391A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1391A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1391A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1391A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1391A>G||||||
1	781689	.	G	C	364.64	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>C|||||4571|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>C|||||4289|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5618G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1345G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4936G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1345G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1345G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1345G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1345G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1345G>C||||||
1	781700	rs11800923	G	A	1221.24	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||4582|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||4300|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5607G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1334G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4947G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1334G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1334G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1334G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1334G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1334G>A||||||
1	781717	.	A	G	697.51	.	AC=30;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4599|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4317|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5590A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1317A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4964A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1317A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1317A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1317A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1317A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1317A>G||||||
1	781718	rs116473820	A	G	877.08	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4600|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4318|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5589A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1316A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+4965A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1316A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1316A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1316A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1316A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1316A>G||||||
1	781761	.	A	G	1225.08	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4967|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4643|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4361|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5546A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1273A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5008A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1273A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1273A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1273A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1273A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1273A>G||||||
1	781802	.	G	A	480.11	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4926|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||4684|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||4402|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5505G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1232G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5049G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1232G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1232G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1232G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1232G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1232G>A||||||
1	781845	rs61768199	A	G	2491.02	.	AC=86;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4883|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4727|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4445|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5462A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1189A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5092A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1189A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1189A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1189A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1189A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1189A>G||||||
1	781851	.	G	A	176.45	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4877|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||4733|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||4451|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5456G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1183G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5098G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1183G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1183G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1183G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1183G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1183G>A||||||
1	781916	.	G	A	370.46	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4812|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||4798|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||4516|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5391G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1118G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5163G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1118G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1118G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1118G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1118G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1118G>A||||||
1	781917	.	T	C	208.89	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||4811|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||4799|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||4517|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5390T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5164T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1117T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1117T>C||||||
1	781932	.	A	C,G	248.43	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>C|||||4796|,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4796|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>C|||||4814|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4814|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>C|||||4532|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4532|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5375A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5375A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1102A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1102A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5179A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5179A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1102A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1102A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1102A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1102A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1102A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1102A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1102A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1102A>G||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1102A>C||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1102A>G||||||
1	781943	.	C	G	50.39	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>G|||||4785|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>G|||||4825|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>G|||||4543|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5364C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1091C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5190C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1091C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1091C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1091C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1091C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1091C>G||||||
1	781993	rs2518993	G	A	248.39	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4735|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750G>A|||||4875|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||4593|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5314G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1041G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5240G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1041G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1041G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1041G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1041G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1041G>A||||||
1	782017	rs74223847	A	G	117.47	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4711|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4899|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4617|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5290A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1017A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5264A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1017A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1017A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1017A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1017A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1017A>G||||||
1	782018	.	A	G	182.39	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4710|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750A>G|||||4900|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4618|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5289A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1016A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5265A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1016A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1016A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1016A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1016A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1016A>G||||||
1	782025	.	C	T	123.74	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||4703|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750C>T|||||4907|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||4625|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5282C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-1009C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.383+5272C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-1009C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-1009C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-1009C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-1009C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-1009C>T||||||
1	782054	.	T	C	344.01	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||4674|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000441765|lincRNA||n.*750T>C|||||4936|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>C|||||4654|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-980T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5253T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-980T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-980T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-980T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-980T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-980T>C||||||
1	782119	.	T	A	513.98	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>A|||||4609|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>A|||||4719|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5188T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-915T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5188T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-915T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-915T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-915T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-915T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-915T>A||||||
1	782138	.	C	T	439.65	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||4590|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894C>T|||||4738|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5169C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-896C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5169C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-896C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-896C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-896C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-896C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-896C>T||||||
1	782160	.	T	G	72.11	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>G|||||4568|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>G|||||4760|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5147T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-874T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5147T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-874T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-874T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-874T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-874T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-874T>G||||||
1	782185	.	A	G	88.69	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4543|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4785|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5122A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-849A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5122A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-849A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-849A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-849A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-849A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-849A>G||||||
1	782225	rs115304982	G	A	1810.83	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4503|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>A|||||4825|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5082G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-809G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5082G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-809G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-809G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-809G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-809G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-809G>A||||||
1	782249	.	G	T	52.33	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>T|||||4479|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>T|||||4849|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5058G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-785G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5058G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-785G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-785G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-785G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-785G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-785G>T||||||
1	782306	.	A	T	345.28	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>T|||||4422|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>T|||||4906|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-5001A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-728A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-5001A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-728A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-728A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-728A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-728A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-728A>T||||||
1	782339	.	T	G	53.1	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>G|||||4389|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894T>G|||||4939|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4968T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-695T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4968T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-695T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-695T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-695T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-695T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-695T>G||||||
1	782340	.	G	T	104.13	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>T|||||4388|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894G>T|||||4940|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4967G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-694G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4967G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-694G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-694G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-694G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-694G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-694G>T||||||
1	782396	.	A	G	1655.49	.	AC=32;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4332|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000415295|lincRNA||n.*894A>G|||||4996|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4911A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-638A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4911A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-638A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-638A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-638A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-638A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-638A>G||||||
1	782431	.	T	A	98.5	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>A|||||4297|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4876T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-603T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4876T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-603T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-603T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-603T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-603T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-603T>A||||||
1	782463	rs2544278	T	A	1020.53	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>A|||||4265|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4844T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-571T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4844T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-571T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-571T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-571T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-571T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-571T>A||||||
1	782470	rs76135949	G	A	9375.38	.	AC=100;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4258|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4837G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4837G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-564G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-564G>A||||||
1	782528	rs77016203	T	C	7509.68	.	AC=96;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||4200|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4779T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-506T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4779T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-506T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-506T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-506T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-506T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-506T>C||||||
1	782543	rs2544279	C	G	150.21	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>G|||||4185|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4764C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-491C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4764C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-491C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-491C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-491C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-491C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-491C>G||||||
1	782553	rs2544280	C	T	1258.23	.	AC=56;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||4175|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4754C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-481C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4754C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-481C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-481C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-481C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-481C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-481C>T||||||
1	782589	.	A	G	61.45	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||4139|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4718A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-445A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4718A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-445A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-445A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-445A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-445A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-445A>G||||||
1	782677	.	G	T	6265.07	.	AC=95;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>T|||||4051|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4630G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-357G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4630G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-357G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-357G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-357G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-357G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-357G>T||||||
1	782683	.	C	A	1208.58	.	AC=35;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>A|||||4045|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4624C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-351C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4624C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-351C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-351C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-351C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-351C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-351C>A||||||
1	782697	.	G	A	156.91	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4031|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4610G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-337G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4610G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-337G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-337G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-337G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-337G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-337G>A||||||
1	782721	.	G	A	327.23	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||4007|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4586G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-313G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4586G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-313G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-313G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-313G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-313G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-313G>A||||||
1	782774	.	C	T	171.01	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3954|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-260C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4533C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-260C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-260C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-260C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-260C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-260C>T||||||
1	782833	rs12724314	C	T	998.97	.	AC=57;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3895|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4474C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-201C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4474C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-201C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-201C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-201C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-201C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-201C>T||||||
1	782867	rs12736564	T	G	371.26	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>G|||||3861|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4440T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-167T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4440T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-167T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-167T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-167T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-167T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-167T>G||||||
1	782981	rs6594026	C	T	24603.1	.	AC=290;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3747|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4326C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-53C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4326C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-53C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-53C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-53C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-53C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-53C>T||||||
1	783029	.	C	G	279.33	.	AC=14;ANN=G|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|2/4|n.218-5C>G||||||,G|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|2/5|n.206-5C>G||||||,G|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|2/4|n.180-5C>G||||||,G|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|2/4|n.180-5C>G||||||,G|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|1/3|n.43-5C>G||||||,G|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|1/3|n.43-5C>G||||||,G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>G|||||3699|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4278C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4278C>G||||||
1	783042	.	A	G	281.34	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||3686|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4265A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4265A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.226A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.214A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.188A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.188A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.51A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.51A>G||||||
1	783052	.	A	G	332.62	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||3676|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4255A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4255A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.236A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.224A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.198A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.198A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.61A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.61A>G||||||
1	783071	.	C	T	1534.27	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3657|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4236C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4236C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.255C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.243C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.217C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.217C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.80C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.80C>T||||||
1	783095	.	C	G	543.49	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>G|||||3633|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4212C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4212C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.279C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.267C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.241C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.241C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.104C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.104C>G||||||
1	783124	.	A	G	355.61	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||3604|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4183A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4183A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.308A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.296A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.270A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.270A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.133A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.133A>G||||||
1	783147	.	C	T	384.55	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3581|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4160C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4160C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.331C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.319C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.293C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.293C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.156C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.156C>T||||||
1	783163	.	G	A	76.1	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||3565|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4144G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4144G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.347G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.335G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.309G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.309G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.172G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.172G>A||||||
1	783174	.	C	T	82.02	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3554|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4133C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4133C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.358C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.346C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.320C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.320C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.183C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.183C>T||||||
1	783175	.	G	A	663.91	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||3553|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4132G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4132G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.359G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.347G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.321G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.321G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.184G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.184G>A||||||
1	783186	.	G	C	312.7	.	AC=5;ANN=C|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/5|n.370G>C||||||,C|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/6|n.358G>C||||||,C|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/5|n.332G>C||||||,C|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/5|n.332G>C||||||,C|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/4|n.195G>C||||||,C|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/4|n.195G>C||||||,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>C|||||3542|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4121G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4121G>C||||||
1	783193	.	G	C	633.58	.	AC=12;ANN=C|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+7G>C||||||,C|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+7G>C||||||,C|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+7G>C||||||,C|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+7G>C||||||,C|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+7G>C||||||,C|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+7G>C||||||,C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>C|||||3535|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4114G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4114G>C||||||
1	783194	.	G	T	636.92	.	AC=11;ANN=T|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+8G>T||||||,T|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+8G>T||||||,T|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+8G>T||||||,T|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+8G>T||||||,T|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+8G>T||||||,T|splice_region_variant&intron_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+8G>T||||||,T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>T|||||3534|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4113G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4113G>T||||||
1	783205	.	G	C	444.02	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>C|||||3523|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4102G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+19G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4102G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+19G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+19G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+19G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+19G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+19G>C||||||
1	783209	.	A	C	72.91	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>C|||||3519|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4098A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+23A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4098A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+23A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+23A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+23A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+23A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+23A>C||||||
1	783245	.	C	T	46.29	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3483|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4062C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+59C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4062C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+59C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+59C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+59C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+59C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+59C>T||||||
1	783304	rs2980295	T	C	46925.44	.	AC=933;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||3424|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-4003T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+118T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-4003T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+118T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+118T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+118T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+118T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+118T>C||||||
1	783318	rs6686696	A	G	8463.67	.	AC=136;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||3410|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3989A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+132A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3989A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+132A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+132A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+132A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+132A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+132A>G||||||
1	783324	.	C	A	51.17	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>A|||||3404|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3983C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+138C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3983C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+138C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+138C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+138C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+138C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+138C>A||||||
1	783401	.	C	T	50.81	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3327|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+215C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3906C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+215C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+215C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+215C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+215C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+215C>T||||||
1	783524	.	G	A	607.47	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||3204|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3783G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+338G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3783G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+338G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+338G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+338G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+338G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+338G>A||||||
1	783574	.	T	C	1271.74	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||3154|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3733T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+388T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3733T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+388T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+388T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+388T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+388T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+388T>C||||||
1	783602	.	T	C	20.72	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||3126|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+416T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3705T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+416T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+416T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+416T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+416T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+416T>C||||||
1	783604	.	T	C	613.47	.	AC=35;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||3124|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3703T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+418T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3703T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+418T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+418T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+418T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+418T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+418T>C||||||
1	783632	.	G	A	142.4	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||3096|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3675G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+446G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3675G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+446G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+446G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+446G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+446G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+446G>A||||||
1	783640	.	G	A	189.69	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||3088|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3667G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+454G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3667G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+454G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+454G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+454G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+454G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+454G>A||||||
1	783650	.	G	A	269.5	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||3078|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3657G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+464G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3657G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+464G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+464G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+464G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+464G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+464G>A||||||
1	783699	.	C	T	555.06	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||3029|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3608C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+513C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3608C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+513C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+513C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+513C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+513C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+513C>T||||||
1	783711	.	G	A	43.06	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||3017|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3596G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+525G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3596G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+525G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+525G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+525G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+525G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+525G>A||||||
1	783729	.	A	G	159.24	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2999|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3578A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+543A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3578A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+543A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+543A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+543A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+543A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+543A>G||||||
1	783735	.	G	A	894.69	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||2993|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3572G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+549G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3572G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+549G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+549G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+549G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+549G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+549G>A||||||
1	783757	.	A	C	1755.39	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>C|||||2971|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3550A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+571A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3550A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+571A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+571A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+571A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+571A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+571A>C||||||
1	783762	.	A	G	5669.78	.	AC=73;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2966|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3545A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3545A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+576A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+576A>G||||||
1	783803	rs114845465	C	T	1230.73	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||2925|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3504C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+617C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3504C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+617C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+617C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+617C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+617C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+617C>T||||||
1	783804	.	G	A	109.29	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||2924|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3503G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+618G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3503G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+618G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+618G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+618G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+618G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+618G>A||||||
1	783815	.	C	T	45.21	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||2913|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3492C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+629C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3492C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+629C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+629C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+629C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+629C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+629C>T||||||
1	783827	.	A	G	433.31	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2901|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3480A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+641A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3480A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+641A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+641A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+641A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+641A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+641A>G||||||
1	783918	.	T	C	176.13	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||2810|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3389T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+732T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3389T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+732T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+732T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+732T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+732T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+732T>C||||||
1	783950	rs115405973	A	G	166.79	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2778|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3357A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+764A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3357A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+764A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+764A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+764A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+764A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+764A>G||||||
1	783963	.	T	C	67.44	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||2765|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3344T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+777T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3344T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+777T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+777T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+777T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+777T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+777T>C||||||
1	783974	.	T	G	557.93	.	AC=29;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>G|||||2754|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3333T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+788T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3333T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+788T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+788T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+788T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+788T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+788T>G||||||
1	784023	rs17160939	A	G	1689.79	.	AC=70;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2705|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3284A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.370+837A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3284A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+837A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+837A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+837A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.195+837A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.195+837A>G||||||
1	784036	.	G	A	282.36	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||2692|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3271G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-828G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3271G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+850G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+850G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+850G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-828G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-828G>A||||||
1	784058	rs114940294	T	C	380.67	.	AC=27;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||2670|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3249T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-806T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3249T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+872T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+872T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+872T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-806T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-806T>C||||||
1	784078	.	A	G	874.37	.	AC=43;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2650|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3229A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-786A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3229A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+892A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+892A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+892A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-786A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-786A>G||||||
1	784137	.	G	T	331.74	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>T|||||2591|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3170G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-727G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3170G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+951G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+951G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+951G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-727G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-727G>T||||||
1	784271	.	T	C	79.23	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||2457|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3036T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-593T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3036T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1085T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-593T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-593T>C||||||
1	784283	.	T	C	268.52	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||2445|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-3024T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-581T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-3024T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1097T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1097T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1097T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-581T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-581T>C||||||
1	784315	rs12403341	G	T	536.77	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>T|||||2413|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-549G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2992G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1129G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1129G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1129G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-549G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-549G>T||||||
1	784316	rs12404322	C	T	523.61	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||2412|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2991C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-548C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2991C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1130C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1130C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1130C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-548C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-548C>T||||||
1	784367	.	G	A	1394.06	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||2361|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2940G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2940G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1181G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1181G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1181G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-497G>A||||||
1	784371	.	C	T	1580.02	.	AC=36;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||2357|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2936C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-493C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2936C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1185C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1185C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1185C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-493C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-493C>T||||||
1	784390	.	A	G	54.63	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2338|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2917A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-474A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2917A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1204A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1204A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1204A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-474A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-474A>G||||||
1	784498	.	A	G	578.24	.	AC=33;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2230|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2809A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-366A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2809A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1312A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1312A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1312A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-366A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-366A>G||||||
1	784514	.	G	A	13.9	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||2214|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2793G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-350G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2793G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1328G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1328G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1328G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-350G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-350G>A||||||
1	784522	.	A	G	73.43	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||2206|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-342A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2785A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1336A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1336A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1336A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-342A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-342A>G||||||
1	784568	.	C	T	41.9	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||2160|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2739C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-296C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2739C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1382C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1382C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1382C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-296C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-296C>T||||||
1	784573	.	C	G	24.6	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>G|||||2155|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2734C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-291C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2734C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1387C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1387C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1387C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-291C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-291C>G||||||
1	784621	.	C	A	173.49	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>A|||||2107|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2686C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-243C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2686C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1435C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1435C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1435C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-243C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-243C>A||||||
1	784670	.	G	C	24.55	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>C|||||2058|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2637G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2637G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1484G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1484G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1484G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-194G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-194G>C||||||
1	784731	rs2519069	G	A	1346.61	.	AC=47;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1997|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-133G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2576G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1545G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1545G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1545G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-133G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-133G>A||||||
1	784751	rs6678592	G	A	1254.56	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1977|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2556G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-113G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2556G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1565G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1565G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1565G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-113G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-113G>A||||||
1	784768	.	C	G	453.75	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>G|||||1960|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2539C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-96C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2539C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1582C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1582C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1582C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-96C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-96C>G||||||
1	784855	.	C	T	180.33	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||1873|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2452C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|3/4|n.371-9C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2452C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1669C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1669C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1669C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|2/3|n.196-9C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|2/3|n.196-9C>T||||||
1	784903	.	C	T	1090.74	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||1825|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2404C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2404C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1717C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1717C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1717C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/5|n.410C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/4|n.235C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/4|n.235C>T||||||
1	784904	rs2519068	G	A	574.77	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1824|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2403G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2403G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1718G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1718G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1718G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/5|n.411G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/4|n.236G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/4|n.236G>A||||||
1	785025	.	G	A	85.5	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1703|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2282G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+43G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2282G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1839G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+43G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+43G>A||||||
1	785043	.	G	A	9.74	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1685|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2264G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+61G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2264G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1857G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1857G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1857G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+61G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+61G>A||||||
1	785050	rs2905062	G	A	61156.73	.	AC=885;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1678|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2257G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+68G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2257G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1864G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1864G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1864G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+68G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+68G>A||||||
1	785100	rs116097762	C	A	13.02	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>A|||||1628|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+118C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2207C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1914C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1914C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1914C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+118C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+118C>A||||||
1	785102	rs2980297	T	A	342.71	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>A|||||1626|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2205T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+120T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2205T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1916T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1916T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1916T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+120T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+120T>A||||||
1	785137	rs2980298	C	T	313.94	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||1591|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2170C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+155C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2170C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1951C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1951C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1951C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+155C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+155C>T||||||
1	785140	rs114777415	A	C	1835.85	.	AC=34;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>C|||||1588|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2167A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+158A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2167A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+1954A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+1954A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+1954A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+158A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+158A>C||||||
1	785196	rs3131941	C	T	181.4	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||1532|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2111C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+214C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2111C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+2010C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+2010C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+2010C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+214C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+214C>T||||||
1	785210	rs3131940	C	T	255.37	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||1518|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2097C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2097C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.358+2024C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.332+2024C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.332+2024C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.314+228C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.314+228C>T||||||
1	785287	.	A	G	145.62	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||1441|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-2020A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+305A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-2020A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-2020A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-2020A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-2020A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-274A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-271A>G||||||
1	785340	.	A	G	3186.91	.	AC=77;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||1388|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1967A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+358A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1967A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1967A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1967A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1967A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-221A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-218A>G||||||
1	785364	.	G	A	553.36	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1364|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1943G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1943G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1943G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1943G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1943G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-197G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-194G>A||||||
1	785409	.	G	A	249.54	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1319|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1898G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+427G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1898G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1898G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1898G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1898G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-152G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-149G>A||||||
1	785426	.	G	C	37.26	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>C|||||1302|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1881G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+444G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1881G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1881G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1881G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1881G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-135G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-132G>C||||||
1	785437	rs11803966	C	T	62.71	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||1291|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1870C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+455C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1870C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1870C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1870C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1870C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-124C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-121C>T||||||
1	785503	rs115636977	G	A	2440.55	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1225|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1804G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+521G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1804G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1804G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1804G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1804G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-58G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-55G>A||||||
1	785522	rs61768200	T	C	277.34	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||1206|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1785T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+540T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1785T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1785T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1785T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1785T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-39T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-36T>C||||||
1	785531	.	A	C	74.17	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>C|||||1197|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1776A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+549A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1776A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1776A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1776A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1776A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-30A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-27A>C||||||
1	785542	.	G	A	32.39	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||1186|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1765G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+560G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1765G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1765G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1765G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1765G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|3/3|n.315-19G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|3/3|n.315-16G>A||||||
1	785580	.	A	G	613.64	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||1148|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1727A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+598A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1727A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1727A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1727A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1727A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|4/4|n.334A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|4/4|n.337A>G||||||
1	785676	.	C	G	12.39	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>G|||||1052|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1631C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+694C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1631C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1631C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1631C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1631C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA|4/4|n.430C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA|4/4|n.433C>G||||||
1	785753	.	T	C	68.47	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||975|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||22|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||22|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1554T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+771T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1554T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1554T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1554T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1554T>C||||||
1	785807	.	A	T	299.27	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>T|||||921|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>T|||||76|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>T|||||76|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1500A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+825A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1500A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1500A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1500A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1500A>T||||||
1	785834	rs2980299	C	T	350.49	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||894|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||103|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||103|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1473C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+852C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1473C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1473C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1473C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1473C>T||||||
1	785925	.	G	A	843.35	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||803|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||194|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||194|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+943G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1382G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1382G>A||||||
1	785956	.	G	T	19.3	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>T|||||772|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||225|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||225|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1351G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+974G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1351G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1351G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1351G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1351G>T||||||
1	785983	.	G	C	29.48	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>C|||||745|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||252|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||252|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1324G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+1001G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1324G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1324G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1324G>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1324G>C||||||
1	785989	rs2980300	T	C	55956.58	.	AC=850;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||739|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||258|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||258|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1318T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+1007T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1318T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1318T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1318T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1318T>C||||||
1	785993	.	G	A	313.63	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||735|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||262|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||262|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1314G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+1011G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1314G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1314G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1314G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1314G>A||||||
1	786023	rs115208257	A	T	835.96	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>T|||||705|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>T|||||292|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>T|||||292|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1284A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+1041A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1284A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1284A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1284A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1284A>T||||||
1	786089	.	A	G	9.16	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1A>G|||||639|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||358|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||358|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1218A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.489+1107A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1218A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1218A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1218A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1218A>G||||||
1	786247	rs59319764	G	A	10355.03	.	AC=314;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1G>A|||||481|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||516|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||516|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-1060G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-1060G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-1060G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-1060G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-1060G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-1060G>A||||||
1	786496	.	T	G	50.39	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>G|||||232|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||765|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||765|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-811T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-811T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-811T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-811T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-811T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-811T>G||||||
1	786512	.	C	T	1497.52	.	AC=64;ANN=T|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1C>T|||||216|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||781|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||781|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-795C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-795C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-795C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-795C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-795C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-795C>T||||||
1	786533	.	T	A	59.18	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>A|||||195|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>A|||||802|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>A|||||802|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-774T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-774T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-774T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-774T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-774T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-774T>A||||||
1	786547	.	T	C	10.74	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||181|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||816|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||816|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-760T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-760T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-760T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-760T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-760T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-760T>C||||||
1	786584	.	T	C	9.1	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.-1T>C|||||144|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||853|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||853|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-723T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-723T>C||||||
1	786790	.	C	T	2122.45	.	AC=97;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1059|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1059|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-517C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-517C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-517C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-517C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-517C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-517C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.63C>T||||||
1	786792	.	G	T	6236.48	.	AC=151;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||1061|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||1061|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-515G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-515G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-515G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-515G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-515G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-515G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.65G>T||||||
1	786796	.	C	T	6763.87	.	AC=162;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1065|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1065|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-511C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-511C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-511C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-511C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-511C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-511C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.69C>T||||||
1	786810	.	G	A	5816.59	.	AC=249;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1079|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1079|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-497G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-497G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.83G>A||||||
1	786891	.	C	T	111.17	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1160|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1160|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-416C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-416C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-416C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-416C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-416C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-416C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.164C>T||||||
1	786912	.	G	A	122.97	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1181|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1181|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-395G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-395G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-395G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-395G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-395G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-395G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.185G>A||||||
1	786934	.	T	C	1336.74	.	AC=57;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||1203|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||1203|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-373T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-373T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-373T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-373T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-373T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-373T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.207T>C||||||
1	786949	.	G	T	408.69	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||1218|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||1218|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-358G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-358G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-358G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-358G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-358G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-358G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.222G>T||||||
1	786958	.	G	T	259.1	.	AC=25;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||1227|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||1227|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-349G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-349G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-349G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-349G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-349G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-349G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.231G>T||||||
1	786987	.	T	G	481.73	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||1256|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||1256|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-320T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-320T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-320T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-320T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-320T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-320T>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.260T>G||||||
1	786994	rs59519087	C	T	1166.62	.	AC=67;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1263|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1263|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-313C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-313C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-313C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-313C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-313C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-313C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.267C>T||||||
1	786995	rs61768202	G	A	12029.02	.	AC=219;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1264|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1264|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-312G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-312G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-312G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-312G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-312G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-312G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.268G>A||||||
1	786998	.	G	A	185.2	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1267|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1267|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-309G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-309G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-309G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-309G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-309G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-309G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.271G>A||||||
1	787019	rs56289866	C	T	11360.8	.	AC=392;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1288|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1288|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-288C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-288C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-288C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-288C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-288C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-288C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.292C>T||||||
1	787045	.	C	G	512.57	.	AC=53;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||1314|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||1314|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-262C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-262C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-262C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-262C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-262C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-262C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.318C>G||||||
1	787070	.	A	G	75.87	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||1339|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||1339|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-237A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-237A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-237A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-237A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-237A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-237A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.343A>G||||||
1	787121	rs12077234	T	A	5924.21	.	AC=152;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>A|||||1390|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>A|||||1390|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-186T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-186T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-186T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-186T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-186T>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-186T>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.394T>A||||||
1	787135	rs28753393	A	G	21141.22	.	AC=623;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||1404|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||1404|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-172A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-172A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-172A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-172A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-172A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-172A>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.408A>G||||||
1	787151	rs2519065	G	A	7557.74	.	AC=191;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1420|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1420|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-156G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-156G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-156G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-156G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-156G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-156G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.424G>A||||||
1	787173	rs115093905	G	T	878.34	.	AC=35;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||1442|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||1442|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-134G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-134G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-134G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-134G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-134G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-134G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.446G>T||||||
1	787185	rs56327836	G	A	16163.74	.	AC=477;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1454|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1454|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-122G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-122G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.458G>A||||||
1	787205	rs55693913	G	A	26459.77	.	AC=739;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1474|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1474|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-102G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-102G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-102G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-102G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-102G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-102G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.478G>A||||||
1	787217	.	G	A	131.03	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1486|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1486|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-90G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-90G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-90G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-90G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-90G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-90G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.490G>A||||||
1	787262	rs56108613	C	G	32296.97	.	AC=718;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||1531|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||1531|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|2/4|n.271-45C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA|4/4|n.490-45C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|3/3|n.384-45C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|3/5|n.359-45C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|3/4|n.333-45C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|3/4|n.333-45C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.535C>G||||||
1	787372	.	C	T	5.83	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||5|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1641|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1641|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/5|n.336C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA|4/4|n.449C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/6|n.424C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/5|n.398C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/5|n.398C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.645C>T||||||
1	787383	.	A	T	195.09	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>T|||||16|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>T|||||5|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>T|||||1652|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>T|||||1652|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/5|n.347A>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/6|n.435A>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/5|n.409A>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/5|n.409A>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.656A>T||||||
1	787399	rs2905055	G	T	43624.25	.	AC=778;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>T|||||32|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>T|||||21|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||1668|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||1668|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/5|n.363G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/6|n.451G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/5|n.425G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/5|n.425G>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.672G>T||||||
1	787427	.	C	T	65.63	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||60|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||49|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1696|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1696|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/5|n.391C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/6|n.479C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/5|n.453C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/5|n.453C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.700C>T||||||
1	787428	.	G	A	856.89	.	AC=35;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||61|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||50|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1697|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1697|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/5|n.392G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/6|n.480G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/5|n.454G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/5|n.454G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.701G>A||||||
1	787473	.	C	T	215.08	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||106|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||95|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||1742|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||1742|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/5|n.437C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/6|n.525C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/5|n.499C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/5|n.499C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.746C>T||||||
1	787476	.	T	G	38.54	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||109|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||98|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||1745|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||1745|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/5|n.440T>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/6|n.528T>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/5|n.502T>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/5|n.502T>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/2|n.749T>G||||||
1	787492	rs2980301	T	C	176.21	.	AC=20;ANN=C|splice_donor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+2T>C||||||,C|splice_donor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+2T>C||||||,C|splice_donor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+2T>C||||||,C|splice_donor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+2T>C||||||,C|splice_donor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+2T>C||||||,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||125|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||114|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||1761|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||1761|
1	787507	.	G	A	725.99	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||140|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||129|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1776|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1776|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+17G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+17G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+17G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+17G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+17G>A||||||
1	787557	rs2980302	T	G	406.21	.	AC=29;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||190|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||179|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||1826|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||1826|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+67T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+67T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+67T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+67T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+67T>G||||||
1	787559	.	G	A	23.49	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||192|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||181|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1828|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1828|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+69G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+69G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+69G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+69G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+69G>A||||||
1	787606	rs3863622	G	T	19190.98	.	AC=216;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>T|||||239|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>T|||||228|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||1875|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||1875|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+116G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+116G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+116G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+116G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+116G>T||||||
1	787648	rs2980303	T	C	391.64	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||281|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||270|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||1917|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||1917|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+158T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+158T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+158T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+158T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+158T>C||||||
1	787675	.	T	C	1019.26	.	AC=61;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||308|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||297|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||1944|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||1944|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+185T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+185T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+185T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+185T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+185T>C||||||
1	787680	.	G	A	910.81	.	AC=50;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||313|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||302|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1949|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1949|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+190G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+190G>A||||||
1	787685	rs2905054	G	T	55610.74	.	AC=806;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>T|||||318|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>T|||||307|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||1954|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||1954|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+195G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+195G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+195G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+195G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+195G>T||||||
1	787709	.	G	A	5.49	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||342|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||331|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1978|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1978|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+219G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+219G>A||||||
1	787712	rs34609061	G	A	376.11	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||345|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||334|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||1981|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||1981|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+222G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+222G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+222G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+222G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+222G>A||||||
1	787720	rs112391715	T	G	2516.54	.	AC=110;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||353|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||342|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||1989|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||1989|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+230T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+230T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+230T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+230T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+230T>G||||||
1	787739	.	G	A	1946.78	.	AC=104;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||372|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||361|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||2008|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||2008|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+249G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+249G>A||||||
1	787768	.	A	T	930.17	.	AC=67;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>T|||||401|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>T|||||390|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>T|||||2037|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>T|||||2037|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.454+278A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.542+278A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.516+278A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.516+278A>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.763+278A>T||||||
1	787784	.	T	G	483.92	.	AC=37;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||417|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||406|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||2053|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||2053|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-267T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-267T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-267T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-267T>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-267T>G||||||
1	787844	rs2905053	C	T	49047.25	.	AC=833;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||477|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||466|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||2113|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||2113|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-207C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-207C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-207C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-207C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-207C>T||||||
1	787847	.	T	C	29.59	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||480|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||469|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||2116|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||2116|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-204T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-204T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-204T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-204T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-204T>C||||||
1	787884	.	A	C	211.86	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||517|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||506|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>C|||||2153|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>C|||||2153|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-167A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-167A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-167A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-167A>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-167A>C||||||
1	787950	.	A	G	356.7	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||583|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||572|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||2219|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||2219|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-101A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-101A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-101A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-101A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-101A>G||||||
1	787997	rs2519063	A	G	672.84	.	AC=36;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||630|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||619|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||2266|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||2266|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-54A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-54A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-54A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-54A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-54A>G||||||
1	788004	rs115290438	T	C	1890.65	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||637|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||626|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||2273|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||2273|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-47T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-47T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-47T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-47T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-47T>C||||||
1	788036	rs2980304	C	A	211.87	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>A|||||669|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>A|||||658|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>A|||||2305|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>A|||||2305|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-15C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-15C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-15C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-15C>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-15C>A||||||
1	788037	rs114653362	T	C	1751.13	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||670|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||659|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||2306|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||2306|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-14T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-14T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-14T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-14T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-14T>C||||||
1	788050	rs34418528	G	A	105.61	.	AC=9;ANN=A|splice_acceptor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|3/4|n.455-1G>A||||||,A|splice_acceptor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|4/5|n.543-1G>A||||||,A|splice_acceptor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA|4/4|n.517-1G>A||||||,A|splice_acceptor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA|4/4|n.517-1G>A||||||,A|splice_acceptor_variant&intron_variant|HIGH|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron|1/1|n.764-1G>A||||||,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||683|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||672|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||2319|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||2319|
1	788175	.	C	T	402.84	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||808|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||797|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||29|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||29|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||2444|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||2444|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||43|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+29C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+29C>T||||||
1	788197	.	T	C	126.25	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||830|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||819|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||51|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||51|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||2466|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||2466|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||65|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+51T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+51T>C||||||
1	788281	.	G	T	15.67	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>T|||||914|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>T|||||903|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>T|||||135|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>T|||||135|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>T|||||2550|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>T|||||2550|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>T|||||149|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+135G>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+135G>T||||||
1	788348	.	A	G	263.25	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||981|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||970|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||202|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||202|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||2617|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||2617|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||216|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+202A>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+202A>G||||||
1	788358	.	T	C	11.24	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||991|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||980|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||212|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||212|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||2627|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||2627|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||226|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+212T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+212T>C||||||
1	788366	.	G	A	94.06	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||999|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||988|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||220|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||220|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||2635|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||2635|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||234|,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+220G>A||||||,A|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+220G>A||||||
1	788381	.	C	T	59.5	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||1014|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||1003|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||235|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||235|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||2650|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||2650|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||249|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+235C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+235C>T||||||
1	788446	.	T	C	270.12	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||1079|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||1068|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||300|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||300|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||2715|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||2715|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||314|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.550+300T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.638+300T>C||||||
1	788462	.	C	T	42.2	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||1095|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||1084|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||316|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||316|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||2731|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||2731|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||330|,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.551-309C>T||||||,T|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.639-309C>T||||||
1	788595	.	C	G	735.47	.	AC=21;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||1228|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||1217|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||449|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||449|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||2864|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||2864|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||463|,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.551-176C>G||||||,G|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.639-176C>G||||||
1	788713	rs2980306	T	C	24182.38	.	AC=605;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||1346|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||1335|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||567|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||567|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||2982|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||2982|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||581|,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|4/4|n.551-58T>C||||||,C|intron_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|5/5|n.639-58T>C||||||
1	788772	.	C	T	49.16	.	AC=1;ANN=T|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.552C>T||||||,T|splice_region_variant&non_coding_exon_variant|LOW|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.640C>T||||||,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||1405|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||1394|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||626|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||626|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||3041|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||3041|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||640|
1	788840	rs10157303	T	C	6944.22	.	AC=180;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||1473|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||1462|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||694|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||694|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||3109|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||3109|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||708|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.620T>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.708T>C||||||
1	788844	rs10159337	C	G	1675.53	.	AC=112;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||1477|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||1466|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||698|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||698|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||3113|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||3113|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||712|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.624C>G||||||,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.712C>G||||||
1	788889	rs10159341	C	T	345.57	.	AC=29;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||1522|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||1511|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||743|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||743|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||3158|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||3158|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||757|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.669C>T||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.757C>T||||||
1	788899	rs10158924	G	C	61.64	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1532|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1521|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||753|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||753|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3168|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3168|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||767|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.679G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.767G>C||||||
1	788903	rs10158925	G	A	142.95	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||1536|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||1525|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||757|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||757|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||3172|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||3172|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||771|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.683G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.771G>A||||||
1	788945	.	G	C	229.27	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1578|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1567|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||799|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||799|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3214|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3214|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||813|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.725G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.813G>C||||||
1	788952	rs55764050	G	A	452.1	.	AC=36;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||1585|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||1574|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||806|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||806|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||3221|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||3221|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||820|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.732G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.820G>A||||||
1	788994	rs12127634	G	C	380.6	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1627|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1616|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||848|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||848|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3263|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3263|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||862|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.774G>C||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.862G>C||||||
1	789001	rs75921590	G	A	357.93	.	AC=27;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||1634|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||1623|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||855|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||855|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||3270|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||3270|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||869|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.781G>A||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA|6/6|n.869G>A||||||
1	789043	.	G	C	295.99	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1676|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1665|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||37|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||897|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||897|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3312|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3312|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||911|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.823G>C||||||
1	789046	rs10158936	G	C	248.71	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1679|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1668|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||40|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||900|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||900|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3315|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3315|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||914|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.826G>C||||||
1	789050	rs80037846	G	A	468.93	.	AC=35;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||1683|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||1672|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||44|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||904|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||904|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||3319|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||3319|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||918|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.830G>A||||||
1	789058	.	A	G	482.02	.	AC=40;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||1691|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||1680|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||52|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||912|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||912|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||3327|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||3327|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||926|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.838A>G||||||
1	789107	rs56302832	A	G	806.88	.	AC=51;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||1740|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||1729|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||101|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||961|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||961|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||3376|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||3376|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||975|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.887A>G||||||
1	789141	rs111606675	G	C	2939.99	.	AC=143;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1774|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1763|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||135|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||995|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||995|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3410|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3410|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||1009|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.921G>C||||||
1	789144	.	G	C	1112.83	.	AC=83;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1777|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1766|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||138|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||998|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||998|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3413|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3413|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||1012|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.924G>C||||||
1	789156	rs55678644	A	G	90.94	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||1789|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||1778|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||150|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||1010|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||1010|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||3425|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||3425|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||1024|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.936A>G||||||
1	789190	.	G	C	53.77	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||1823|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1812|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||184|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||1044|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||1044|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3459|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3459|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||1058|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.970G>C||||||
1	789193	.	C	G	748.59	.	AC=60;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||1826|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||1815|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||187|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||1047|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||1047|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||3462|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||3462|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||1061|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.973C>G||||||
1	789242	.	C	G	28.28	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||1875|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||1864|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||236|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||1096|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||1096|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||3511|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||3511|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||1110|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1022C>G||||||
1	789256	rs3131939	T	C	36233.05	.	AC=921;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||1889|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||1878|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||250|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||1110|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||1110|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||3525|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||3525|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||1124|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1036T>C||||||
1	789364	.	G	A	47.91	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||1997|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||1986|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||358|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||1218|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||1218|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||3633|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||3633|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||1232|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1144G>A||||||
1	789368	.	G	C	401.98	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||2001|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||1990|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||362|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||1222|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||1222|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||3637|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||3637|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||1236|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1148G>C||||||
1	789406	.	T	A	936.11	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>A|||||2039|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>A|||||2028|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>A|||||400|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>A|||||1260|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>A|||||1260|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>A|||||3675|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>A|||||3675|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>A|||||1274|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1186T>A||||||
1	789437	.	A	C	144.73	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||2070|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||2059|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||431|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||1291|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||1291|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>C|||||3706|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>C|||||3706|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||1305|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1217A>C||||||
1	789465	.	C	T	90.8	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||2098|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||2087|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||459|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||1319|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||1319|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||3734|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||3734|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||1333|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1245C>T||||||
1	789622	.	C	T	83.81	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||2255|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||2244|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||616|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||1476|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||1476|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||3891|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||3891|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||1490|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1402C>T||||||
1	789651	.	A	G	214.97	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||2284|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||2273|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||645|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||1505|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||1505|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||3920|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||3920|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||1519|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1431A>G||||||
1	789676	rs2519051	G	A	488.98	.	AC=34;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||2309|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||2298|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||670|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||1530|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||1530|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||3945|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||3945|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||1544|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1456G>A||||||
1	789716	rs2519049	G	A	511.22	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||2349|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||2338|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||710|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||1570|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||1570|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||3985|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||3985|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||1584|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1496G>A||||||
1	789851	rs4040654	C	T	1062.83	.	AC=59;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||2484|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||2473|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||845|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||1705|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||1705|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||4120|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||4120|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||1719|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1631C>T||||||
1	789858	rs114977744	A	G	412.89	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||2491|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||2480|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||852|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||1712|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||1712|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||4127|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||4127|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||1726|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1638A>G||||||
1	789874	rs113542291	A	T	969.22	.	AC=69;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>T|||||2507|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>T|||||2496|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>T|||||868|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>T|||||1728|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>T|||||1728|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>T|||||4143|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>T|||||4143|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>T|||||1742|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1654A>T||||||
1	789883	rs113186454	A	C	1001.04	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||2516|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||2505|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||877|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||1737|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||1737|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>C|||||4152|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>C|||||4152|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||1751|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1663A>C||||||
1	789920	.	T	C	102.31	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||2553|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||2542|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||914|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||1774|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||1774|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||4189|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||4189|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||1788|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1700T>C||||||
1	789922	.	C	T	330.34	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||2555|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||2544|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||916|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||1776|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||1776|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||4191|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||4191|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||1790|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1702C>T||||||
1	789935	rs4040655	T	C	282.3	.	AC=36;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||2568|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||2557|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||929|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||1789|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||1789|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||4204|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||4204|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||1803|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1715T>C||||||
1	789992	.	T	G	274.69	.	AC=30;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||2625|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||2614|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>G|||||986|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>G|||||1846|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>G|||||1846|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||4261|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||4261|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>G|||||1860|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1772T>G||||||
1	790001	rs115923490	C	T	197.5	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||2634|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||2623|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||995|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||1855|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||1855|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||4270|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||4270|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||1869|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1781C>T||||||
1	790036	.	G	A	861.77	.	AC=35;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||2669|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||2658|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1030|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||1890|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||1890|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4305|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4305|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||1904|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1816G>A||||||
1	790049	rs74045280	G	A	7393.23	.	AC=74;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||2682|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||2671|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1043|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||1903|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||1903|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4318|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4318|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||1917|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1829G>A||||||
1	790082	.	C	G	348.53	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||2715|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||2704|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||1076|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||1936|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||1936|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||4351|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||4351|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||1950|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1862C>G||||||
1	790110	.	G	A	243.15	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||2743|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||2732|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1104|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||1964|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||1964|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4379|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4379|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||1978|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1890G>A||||||
1	790164	.	A	G	200.9	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||2797|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||2786|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||1158|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||2018|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||2018|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||4433|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||4433|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||2032|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1944A>G||||||
1	790187	.	C	T	785.27	.	AC=39;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||2820|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||2809|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||1181|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2041|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2041|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||4456|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||4456|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2055|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1967C>T||||||
1	790188	rs74045281	G	A	5445.84	.	AC=45;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||2821|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||2810|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1182|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2042|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2042|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4457|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4457|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2056|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1968G>A||||||
1	790207	rs112560386	A	G	694.02	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||2840|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||2829|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||1201|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||2061|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||2061|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||4476|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||4476|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||2075|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1987A>G||||||
1	790218	.	C	G	862.52	.	AC=30;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||2851|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||2840|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||1212|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||2072|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||2072|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>G|||||4487|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>G|||||4487|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||2086|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1998C>G||||||
1	790219	.	C	T	34.79	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||2852|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||2841|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||1213|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2073|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2073|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||4488|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||4488|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2087|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.1999C>T||||||
1	790281	.	A	G	180.74	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||2914|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||2903|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||1275|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||2135|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||2135|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||4550|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||4550|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||2149|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2061A>G||||||
1	790330	.	A	G	26.34	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||2963|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||2952|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||1324|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||2184|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||2184|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||4599|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||4599|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||2198|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2110A>G||||||
1	790354	rs117638069	G	A	583.53	.	AC=16;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||2987|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||2976|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1348|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2208|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2208|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4623|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4623|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2222|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2134G>A||||||
1	790355	.	T	C	30.9	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||2988|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||2977|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||1349|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||2209|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||2209|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>C|||||4624|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>C|||||4624|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||2223|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2135T>C||||||
1	790381	.	G	A	695.26	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3014|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3003|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1375|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2235|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2235|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4650|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4650|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2249|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2161G>A||||||
1	790384	.	A	C	31.46	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||3017|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||3006|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||1378|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||2238|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||2238|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>C|||||4653|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>C|||||4653|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||2252|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2164A>C||||||
1	790465	rs61768207	G	A	12562.91	.	AC=141;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3098|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3087|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1459|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2319|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2319|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4734|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4734|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2333|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2245G>A||||||
1	790547	.	T	G	450.34	.	AC=29;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||3180|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||3169|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>G|||||1541|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>G|||||2401|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>G|||||2401|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485T>G|||||4816|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488T>G|||||4816|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>G|||||2415|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2327T>G||||||
1	790550	.	G	C	641.9	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||3183|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||3172|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||1544|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||2404|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||2404|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>C|||||4819|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>C|||||4819|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||2418|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2330G>C||||||
1	790590	.	C	T	731.42	.	AC=33;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||3223|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||3212|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||1584|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2444|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2444|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||4859|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||4859|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2458|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2370C>T||||||
1	790656	.	A	G	349.99	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||3289|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||3278|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||1650|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||2510|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||2510|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>G|||||4925|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>G|||||4925|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||2524|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2436A>G||||||
1	790667	rs116753918	C	T	1967.53	.	AC=21;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||3300|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||3289|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||1661|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2521|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2521|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485C>T|||||4936|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488C>T|||||4936|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2535|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2447C>T||||||
1	790668	.	G	A	499.62	.	AC=31;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3301|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3290|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1662|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2522|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2522|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485G>A|||||4937|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488G>A|||||4937|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2536|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2448G>A||||||
1	790717	.	A	C	198.4	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||3350|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||3339|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||1711|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||2571|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||2571|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000608189|lincRNA||n.*485A>C|||||4986|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609009|lincRNA||n.*488A>C|||||4986|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||2585|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2497A>C||||||
1	790742	.	C	A	21.36	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>A|||||3375|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>A|||||3364|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>A|||||1736|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>A|||||2596|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>A|||||2596|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>A|||||2610|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2522C>A||||||
1	790743	.	G	A	83.13	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3376|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3365|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1737|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2597|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2597|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2611|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2523G>A||||||
1	790829	.	A	G	474.42	.	AC=22;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||3462|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||3451|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||1823|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||2683|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||2683|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||2697|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2609A>G||||||
1	790860	.	C	G	1120.63	.	AC=16;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||3493|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||3482|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||1854|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||2714|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||2714|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||2728|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2640C>G||||||
1	790879	.	G	A	761.4	.	AC=31;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3512|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3501|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1873|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2733|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2733|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2747|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2659G>A||||||
1	790887	.	G	A	1203.65	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3520|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3509|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1881|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2741|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2741|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2755|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2667G>A||||||
1	790907	.	C	T	996.81	.	AC=33;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||3540|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||3529|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||1901|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2761|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2761|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2775|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2687C>T||||||
1	790933	.	G	A	31.58	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3566|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3555|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||1927|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2787|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2787|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2801|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2713G>A||||||
1	790984	rs6699310	G	C	7189.24	.	AC=79;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>C|||||3617|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>C|||||3606|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||1978|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>C|||||2838|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>C|||||2838|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>C|||||2852|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2764G>C||||||
1	791010	.	A	G	459.82	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||3643|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||3632|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||2004|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||2864|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||2864|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||2878|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2790A>G||||||
1	791025	.	C	T	26.12	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||3658|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||3647|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2019|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2879|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2879|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2893|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2805C>T||||||
1	791036	rs116019130	T	C	1548.66	.	AC=39;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||3669|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||3658|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||2030|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||2890|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||2890|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||2904|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2816T>C||||||
1	791042	.	G	A	310.33	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3675|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3664|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2036|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2896|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2896|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2910|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2822G>A||||||
1	791065	.	C	T	20.2	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||3698|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||3687|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2059|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2919|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2919|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2933|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2845C>T||||||
1	791071	.	C	T	85.07	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||3704|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||3693|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2065|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||2925|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||2925|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||2939|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2851C>T||||||
1	791072	rs2519029	G	A	204.88	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3705|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3694|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2066|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2926|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2926|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2940|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2852G>A||||||
1	791099	rs2519028	G	A	532.93	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3732|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3721|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2093|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||2953|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||2953|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||2967|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2879G>A||||||
1	791159	.	T	C	275.34	.	AC=28;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||3792|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||3781|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||2153|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||3013|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||3013|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||3027|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2939T>C||||||
1	791191	rs111818025	G	A	17132.21	.	AC=204;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3824|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3813|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2185|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3045|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3045|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3059|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.2971G>A||||||
1	791285	.	G	A	184.92	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3918|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3907|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2279|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3139|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3139|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3153|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3065G>A||||||
1	791291	.	C	T	1063.62	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||3924|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||3913|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2285|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||3145|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||3145|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||3159|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3071C>T||||||
1	791303	.	G	A	155.9	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3936|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3925|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2297|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3157|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3157|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3171|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3083G>A||||||
1	791312	.	A	C	190.34	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||3945|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||3934|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||2306|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||3166|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||3166|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||3180|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3092A>C||||||
1	791315	rs116928318	A	G	7418.84	.	AC=93;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||3948|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||3937|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||2309|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||3169|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||3169|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||3183|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3095A>G||||||
1	791322	.	A	G	1571.78	.	AC=41;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||3955|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||3944|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||2316|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||3176|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||3176|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||3190|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3102A>G||||||
1	791328	rs74877941	G	A	7616.26	.	AC=99;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||3961|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||3950|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2322|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3182|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3182|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3196|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3108G>A||||||
1	791360	.	A	C	86.2	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||3993|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||3982|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||2354|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||3214|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||3214|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||3228|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3140A>C||||||
1	791381	.	C	G	59.32	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||4014|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||4003|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||2375|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||3235|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||3235|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||3249|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3161C>G||||||
1	791392	.	C	G	2154.09	.	AC=56;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||4025|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||4014|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||2386|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||3246|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||3246|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||3260|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3172C>G||||||
1	791420	.	A	C	841.78	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||4053|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||4042|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||2414|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||3274|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||3274|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||3288|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3200A>C||||||
1	791495	.	C	T	869.73	.	AC=36;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4128|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4117|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2489|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||3349|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||3349|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||3363|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3275C>T||||||
1	791503	rs116579639	T	G	509.81	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||4136|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||4125|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>G|||||2497|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>G|||||3357|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>G|||||3357|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>G|||||3371|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3283T>G||||||
1	791560	.	G	T	49.68	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>T|||||4193|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>T|||||4182|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>T|||||2554|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>T|||||3414|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>T|||||3414|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>T|||||3428|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3340G>T||||||
1	791605	.	C	A	350.45	.	AC=28;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>A|||||4238|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>A|||||4227|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>A|||||2599|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>A|||||3459|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>A|||||3459|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>A|||||3473|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3385C>A||||||
1	791623	rs114300377	C	G	1088.63	.	AC=31;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>G|||||4256|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>G|||||4245|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||2617|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||3477|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||3477|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||3491|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3403C>G||||||
1	791641	.	G	A	310.08	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||4274|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||4263|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2635|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3495|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3495|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3509|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3421G>A||||||
1	791678	.	T	C	289.41	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||4311|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||4300|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||2672|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||3532|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||3532|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||3546|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3458T>C||||||
1	791691	.	G	T	273.0	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>T|||||4324|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>T|||||4313|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>T|||||2685|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>T|||||3545|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>T|||||3545|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>T|||||3559|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3471G>T||||||
1	791715	.	A	G	1379.77	.	AC=26;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||4348|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||4337|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||2709|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||3569|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||3569|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||3583|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3495A>G||||||
1	791743	.	C	T	246.19	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4376|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4365|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2737|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||3597|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||3597|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||3611|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3523C>T||||||
1	791750	.	A	C	153.46	.	AC=23;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>C|||||4383|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>C|||||4372|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||2744|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||3604|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||3604|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||3618|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3530A>C||||||
1	791832	.	A	G	209.38	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||4465|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||4454|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||2826|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||3686|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||3686|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||3700|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3612A>G||||||
1	791838	.	C	A	95.91	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>A|||||4471|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>A|||||4460|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>A|||||2832|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>A|||||3692|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>A|||||3692|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>A|||||3706|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3618C>A||||||
1	791851	.	C	T	80.1	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4484|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4473|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2845|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||3705|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||3705|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||3719|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3631C>T||||||
1	791853	rs6684487	G	A	2581.46	.	AC=62;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||4486|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||4475|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2847|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3707|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3707|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3721|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3633G>A||||||
1	791858	.	G	A	566.96	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||4491|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||4480|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2852|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3712|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3712|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3726|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3638G>A||||||
1	791876	.	G	A	195.88	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||4509|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||4498|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2870|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3730|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3730|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3744|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3656G>A||||||
1	791900	.	C	T	238.02	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4533|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4522|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2894|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||3754|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||3754|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||3768|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3680C>T||||||
1	791907	.	G	T	831.65	.	AC=41;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>T|||||4540|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>T|||||4529|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>T|||||2901|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>T|||||3761|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>T|||||3761|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>T|||||3775|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3687G>T||||||
1	791911	rs117589110	T	G	403.5	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>G|||||4544|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>G|||||4533|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>G|||||2905|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>G|||||3765|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>G|||||3765|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>G|||||3779|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3691T>G||||||
1	791932	.	C	T	178.05	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4565|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4554|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||2926|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||3786|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||3786|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||3800|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3712C>T||||||
1	791933	.	G	A	246.18	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||4566|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||4555|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||2927|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3787|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3787|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3801|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3713G>A||||||
1	791987	rs77103542	T	C	3228.29	.	AC=89;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||4620|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||4609|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||2981|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||3841|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||3841|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||3855|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3767T>C||||||
1	792025	.	C	A	485.18	.	AC=26;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>A|||||4658|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>A|||||4647|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>A|||||3019|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>A|||||3879|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>A|||||3879|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>A|||||3893|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3805C>A||||||
1	792043	.	G	A	309.36	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||4676|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||4665|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||3037|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||3897|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||3897|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||3911|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3823G>A||||||
1	792049	.	C	T	146.98	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4682|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4671|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||3043|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||3903|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||3903|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||3917|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3829C>T||||||
1	792075	.	T	C	633.23	.	AC=31;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||4708|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||4697|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||3069|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||3929|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||3929|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||3943|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3855T>C||||||
1	792107	.	A	T	67.64	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>T|||||4740|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>T|||||4729|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>T|||||3101|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>T|||||3961|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>T|||||3961|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>T|||||3975|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3887A>T||||||
1	792121	.	A	G	311.48	.	AC=21;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||4754|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||4743|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3115|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||3975|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||3975|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||3989|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3901A>G||||||
1	792129	.	T	C	248.96	.	AC=25;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550T>C|||||4762|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455T>C|||||4751|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||3123|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||3983|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||3983|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||3997|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3909T>C||||||
1	792186	.	G	A	460.53	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550G>A|||||4819|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455G>A|||||4808|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||3180|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||4040|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||4040|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||4054|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3966G>A||||||
1	792197	.	A	G	371.43	.	AC=27;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||4830|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||4819|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3191|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4051|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4051|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4065|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.3977A>G||||||
1	792263	rs1044922	A	G	33393.69	.	AC=818;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550A>G|||||4896|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455A>G|||||4885|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3257|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4117|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4117|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4131|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4043A>G||||||
1	792300	.	C	T	27.01	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4933|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4922|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||3294|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||4154|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||4154|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||4168|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4080C>T||||||
1	792349	.	C	T	51.15	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000610067|lincRNA||n.*550C>T|||||4982|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4971|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||3343|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||4203|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||4203|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||4217|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4129C>T||||||
1	792373	.	C	T	27.79	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000609139|lincRNA||n.*455C>T|||||4995|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||3367|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||4227|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||4227|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||4241|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4153C>T||||||
1	792399	.	A	G	467.98	.	AC=28;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3393|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4253|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4253|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4267|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4179A>G||||||
1	792448	.	G	A	483.71	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||3442|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||4302|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||4302|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||4316|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4228G>A||||||
1	792480	rs2905036	C	T	80702.5	.	AC=1073;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||3474|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||4334|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||4334|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||4348|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4260C>T||||||
1	792534	rs2518996	A	G	1294.61	.	AC=42;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3528|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4388|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4388|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4402|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4314A>G||||||
1	792590	.	C	A	176.19	.	AC=22;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>A|||||3584|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>A|||||4444|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>A|||||4444|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>A|||||4458|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4370C>A||||||
1	792601	.	T	C	28.82	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||3595|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||4455|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||4455|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||4469|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4381T>C||||||
1	792604	rs2518994	G	A	1736.38	.	AC=51;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||3598|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||4458|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||4458|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||4472|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4384G>A||||||
1	792643	rs117997018	A	G	85.37	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3637|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4497|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4497|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4511|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4423A>G||||||
1	792647	.	T	C	1059.39	.	AC=43;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||3641|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||4501|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||4501|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||4515|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4427T>C||||||
1	792747	.	T	C	438.44	.	AC=33;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||3741|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>C|||||4601|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>C|||||4601|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>C|||||4615|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4527T>C||||||
1	792801	.	C	G	921.68	.	AC=37;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||3795|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>G|||||4655|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>G|||||4655|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>G|||||4669|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4581C>G||||||
1	792804	.	C	T	70.02	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||3798|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||4658|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||4658|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||4672|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4584C>T||||||
1	792871	.	A	T	577.39	.	AC=44;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>T|||||3865|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>T|||||4725|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>T|||||4725|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>T|||||4739|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4651A>T||||||
1	792912	.	A	G	169.45	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3906|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4766|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4766|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4780|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4692A>G||||||
1	792945	.	A	G	144.49	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||3939|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4799|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4799|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4813|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4725A>G||||||
1	792954	.	G	A	73.29	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||3948|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612G>A|||||4808|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612G>A|||||4808|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845G>A|||||4822|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4734G>A||||||
1	792985	.	T	A	25.54	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>A|||||3979|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612T>A|||||4839|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612T>A|||||4839|,A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845T>A|||||4853|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4765T>A||||||
1	793067	.	A	G	2196.38	.	AC=99;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||4061|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4921|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4921|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4935|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4847A>G||||||
1	793080	.	A	G	149.24	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||4074|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4934|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4934|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>G|||||4948|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4860A>G||||||
1	793093	.	C	T	6.73	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||4087|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612C>T|||||4947|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612C>T|||||4947|,T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845C>T|||||4961|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4873C>T||||||
1	793117	.	A	C	541.1	.	AC=29;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||4111|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>C|||||4971|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>C|||||4971|,C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000425657|retained_intron||n.*845A>C|||||4985|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4897A>C||||||
1	793145	.	A	G	8774.76	.	AC=295;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||4139|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000416570|lincRNA||n.*612A>G|||||4999|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000448975|lincRNA||n.*612A>G|||||4999|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4925A>G||||||
1	793181	.	C	T	62.55	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||4175|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4961C>T||||||
1	793182	.	G	A	143.88	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||4176|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4962G>A||||||
1	793187	.	G	C	28.72	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||4181|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4967G>C||||||
1	793189	.	G	A	9209.89	.	AC=188;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||4183|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4969G>A||||||
1	793208	rs115696835	C	G	13030.16	.	AC=270;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||4202|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.4988C>G||||||
1	793227	.	T	C	1627.19	.	AC=70;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||4221|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5007T>C||||||
1	793404	.	G	C	802.15	.	AC=39;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||4398|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5184G>C||||||
1	793429	.	T	C	21731.74	.	AC=520;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||4423|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5209T>C||||||
1	793448	.	C	T	328.26	.	AC=12;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||4442|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5228C>T||||||
1	793470	.	G	A	145.72	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||4464|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5250G>A||||||
1	793507	.	T	C	1225.82	.	AC=54;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||4501|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5287T>C||||||
1	793521	.	T	G	1076.21	.	AC=51;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>G|||||4515|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5301T>G||||||
1	793535	.	A	G	363.81	.	AC=27;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||4529|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5315A>G||||||
1	793553	.	T	A	21.96	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>A|||||4547|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5333T>A||||||
1	793557	.	C	T	49.19	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||4551|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5337C>T||||||
1	793590	.	G	A	84.34	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||4584|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5370G>A||||||
1	793598	.	T	C	44.32	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||4592|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5378T>C||||||
1	793630	.	T	C	377.25	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||4624|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5410T>C||||||
1	793651	.	G	A	58.42	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||4645|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5431G>A||||||
1	793698	.	C	G	55.61	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>G|||||4692|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5478C>G||||||
1	793727	rs116352281	T	C	800.37	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>C|||||4721|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5507T>C||||||
1	793730	.	C	T	75.27	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874C>T|||||4724|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5510C>T||||||
1	793750	rs115688342	G	T	2114.81	.	AC=74;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>T|||||4744|,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5530G>T||||||
1	793770	.	G	A	1086.88	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>A|||||4764|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5550G>A||||||
1	793806	rs2980308	T	A	923.41	.	AC=52;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874T>A|||||4800|,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5586T>A||||||
1	793922	.	G	C	1217.33	.	AC=40;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||4916|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5702G>C||||||
1	793947	rs2519031	A	G	268.18	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>G|||||4941|,G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5727A>G||||||
1	793951	rs115634970	A	C	275.36	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874A>C|||||4945|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5731A>C||||||
1	793979	.	G	C	89.31	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000449005|lincRNA||n.*874G>C|||||4973|,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5759G>C||||||
1	794017	.	C	T	107.7	.	AC=3;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5797C>T||||||
1	794027	.	G	A	626.02	.	AC=17;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5807G>A||||||
1	794051	.	A	G	14.7	.	AC=1;ANN=G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5831A>G||||||
1	794055	.	C	T	186.07	.	AC=7;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5835C>T||||||
1	794056	.	G	C	227.54	.	AC=15;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5836G>C||||||
1	794103	.	G	A	170.74	.	AC=8;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5883G>A||||||
1	794104	.	T	C	796.94	.	AC=38;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5884T>C||||||
1	794128	.	G	T	336.13	.	AC=32;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5908G>T||||||
1	794151	.	G	A	308.51	.	AC=19;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:794146_794295|||||||||,A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5931G>A||||||
1	794172	rs11804026	G	T	1609.51	.	AC=72;ANN=T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:794146_794295|||||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5952G>T||||||
1	794187	.	G	T	21.64	.	AC=1;ANN=T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:794146_794295|||||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5967G>T||||||
1	794213	.	G	C	82.76	.	AC=11;ANN=C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:794146_794295|||||||||,C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.5993G>C||||||
1	794283	.	C	T	103.82	.	AC=3;ANN=T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:794146_794295|||||||||,T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6063C>T||||||
1	794319	.	G	A	83.19	.	AC=4;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6099G>A||||||
1	794331	rs11805266	C	T	912.64	.	AC=26;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6111C>T||||||
1	794332	rs12127425	G	A	4680.77	.	AC=88;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6112G>A||||||
1	794342	.	A	G	22.93	.	AC=1;ANN=G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6122A>G||||||
1	794349	.	T	C	941.87	.	AC=43;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6129T>C||||||
1	794368	.	G	A	41.42	.	AC=1;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6148G>A||||||
1	794374	rs116146680	T	C	415.59	.	AC=19;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6154T>C||||||
1	794386	rs2980309	A	G	551.19	.	AC=35;ANN=G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6166A>G||||||
1	794464	rs2980310	C	T	1594.73	.	AC=50;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6244C>T||||||
1	794578	.	G	A	267.6	.	AC=14;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6358G>A||||||
1	794616	rs7518333	T	C	1974.9	.	AC=70;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6396T>C||||||
1	794623	rs7547353	G	T	2729.33	.	AC=86;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6403G>T||||||
1	794647	.	T	C	730.71	.	AC=30;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6427T>C||||||
1	794663	.	T	C	28.59	.	AC=1;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6443T>C||||||
1	794704	rs58264858	C	T	121.98	.	AC=5;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6484C>T||||||
1	794705	rs11804425	G	A	5447.92	.	AC=76;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6485G>A||||||
1	794709	.	A	G	59.17	.	AC=1;ANN=G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6489A>G||||||
1	794725	.	G	A	206.46	.	AC=5;ANN=A|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6505G>A||||||
1	794730	.	A	T	16.94	.	AC=1;ANN=T|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6510A>T||||||
1	794778	.	T	C	1110.75	.	AC=21;ANN=C|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6558T>C||||||
1	794787	.	A	G	61.95	.	AC=1;ANN=G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6567A>G||||||
1	794803	.	A	G	173.92	.	AC=14;ANN=G|non_coding_exon_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA|5/5|n.6583A>G||||||
1	794874	.	T	C	6457.06	.	AC=93;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||48|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	794932	.	A	C	2028.1	.	AC=57;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||106|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795017	.	G	A	353.61	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||191|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795089	.	A	G	57.42	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||263|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795091	.	C	T	63.33	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||265|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795131	.	G	A	37.28	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||305|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795173	.	C	G	27.82	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||347|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795175	rs3131937	G	A	1744.62	.	AC=55;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||349|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795222	rs12131377	C	G	2959.25	.	AC=59;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||396|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795237	.	T	C	986.98	.	AC=44;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||411|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795240	rs114113177	T	A	29.08	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>A|||||414|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795264	rs3131936	C	T	891.02	.	AC=42;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||438|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795293	.	C	T	71.82	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||467|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795316	.	C	G	102.07	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||490|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795319	rs61768209	T	C	197.57	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||493|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795403	.	G	C	1196.6	.	AC=42;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||577|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795414	rs3131935	T	A	8482.19	.	AC=113;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>A|||||588|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795420	.	G	A	1057.35	.	AC=18;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||594|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795634	.	G	T	53.64	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||808|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795641	.	T	C	92.26	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||815|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795692	.	T	C	79.58	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||866|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795729	.	A	C	116.21	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||903|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795753	.	C	T	1218.43	.	AC=41;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||927|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795783	.	G	A	26.79	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||957|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795820	rs111424298	G	C	8.53	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||994|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795824	rs112896657	C	T	679.16	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||998|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795848	.	C	G	216.32	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||1022|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795942	.	T	C	98.81	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1116|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795988	rs59380221	C	T	22105.83	.	AC=261;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||1162|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:795946_796095|||||||||,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	795990	.	C	G	419.9	.	AC=20;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||1164|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:795946_796095|||||||||,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796010	.	G	A	28.24	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||1184|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:795946_796095|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796052	.	A	C	737.14	.	AC=41;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||1226|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:795946_796095|||||||||,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796066	.	G	A	359.98	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||1240|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:795946_796095|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796077	.	G	A	539.76	.	AC=47;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||1251|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:795946_796095|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796100	rs12132398	C	T	2331.56	.	AC=65;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||1274|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796167	rs2980294	T	G	272.49	.	AC=35;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>G|||||1341|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796168	.	T	C	158.23	.	AC=5;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1342|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796176	rs114619596	G	C	419.27	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||1350|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796202	rs2980293	A	G	338.05	.	AC=37;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||1376|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796206	.	C	T	31.28	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||1380|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796234	.	G	A	42.26	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||1408|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796270	.	G	A	78.5	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||1444|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796289	.	T	C	341.44	.	AC=28;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1463|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796298	.	C	G	81.4	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||1472|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796375	rs12083781	T	C	9559.66	.	AC=150;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1549|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796376	rs111698755	G	T	746.87	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||1550|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796392	.	T	C	1389.78	.	AC=50;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1566|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796456	.	T	C	90.09	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1630|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796473	rs2980292	C	G	309.53	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||1647|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796511	rs2980291	C	G	822.16	.	AC=47;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||1685|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796516	.	C	T	820.1	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||1690|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796534	rs72631879	T	C	7736.26	.	AC=158;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1708|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796643	.	C	T	857.4	.	AC=54;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||1817|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796714	.	C	G	1465.66	.	AC=57;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||1888|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796727	rs115637794	G	T	47791.15	.	AC=649;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||1901|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796767	rs75932129	G	A	53125.82	.	AC=678;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||1941|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796771	.	T	C	2238.71	.	AC=96;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1945|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796775	rs115271272	T	C	10562.3	.	AC=136;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||1949|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796781	.	C	G	135.68	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||1955|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796799	.	A	C,G	141.05	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||1973|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||1973|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796848	.	A	T	2778.84	.	AC=91;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>T|||||2022|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796918	rs113791400	C	T	685.83	.	AC=27;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||2092|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	796955	.	A	T	26.67	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>T|||||2129|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797011	.	A	T	24.66	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>T|||||2185|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797037	rs116099766	G	A	757.45	.	AC=27;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||2211|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797039	rs114771420	A	G	17926.69	.	AC=216;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||2213|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797043	.	G	A	7.28	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||2217|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797113	.	A	G	465.47	.	AC=25;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||2287|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797163	rs115380516	G	A	2181.8	.	AC=99;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||2337|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797178	rs116771991	A	T	10804.55	.	AC=165;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>T|||||2352|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797208	.	T	C,G	238.8	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||2382|,G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>G|||||2382|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797211	.	T	A	64.9	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>A|||||2385|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797225	.	G	T	192.1	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||2399|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797281	rs76631953	G	C	7797.35	.	AC=63;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||2455|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797297	rs117945074	T	G	620.15	.	AC=58;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>G|||||2471|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797320	rs116633447	C	G	705.86	.	AC=53;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||2494|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797325	rs111739932	T	C	6355.27	.	AC=66;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||2499|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797371	rs117122191	A	T	551.81	.	AC=45;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>T|||||2545|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797440	rs58013264	T	C	17956.25	.	AC=175;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||2614|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797474	rs114150573	G	T	7364.63	.	AC=131;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||2648|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797506	rs116442413	G	C	368.42	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||2680|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797549	rs118073637	G	T	401.66	.	AC=30;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||2723|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797738	.	A	G	244.22	.	AC=20;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||2912|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797801	.	A	G	51.53	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||2975|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797810	.	G	A	57.97	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||2984|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797813	.	T	C	519.31	.	AC=38;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||2987|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797820	rs115861588	T	G	1433.91	.	AC=23;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>G|||||2994|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797839	.	G	A	147.12	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||3013|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	797840	.	G	A	848.05	.	AC=50;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||3014|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798026	rs4951864	C	T	54034.52	.	AC=918;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||3200|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798045	.	C	G	320.23	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||3219|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798078	.	G	C	304.48	.	AC=23;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||3252|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798095	.	A	G	217.04	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||3269|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798185	.	G	A	1250.33	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||3359|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798248	.	G	T	735.67	.	AC=28;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||3422|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798362	.	T	G	230.59	.	AC=22;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>G|||||3536|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798373	.	A	T	71.46	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>T|||||3547|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798384	.	G	C	16.04	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||3558|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798400	rs10900604	A	G	21577.28	.	AC=348;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||3574|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798430	.	G	A	1577.24	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||3604|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798471	.	G	T	335.86	.	AC=27;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||3645|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>A|||||4980|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798560	.	T	G	18.6	.	AC=5;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>G|||||3734|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>C|||||4891|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:798506_798655|||||||||,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798579	.	C	A	262.46	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>A|||||3753|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>T|||||4872|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:798506_798655|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798594	.	G	C	290.91	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||3768|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>G|||||4857|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:798506_798655|||||||||,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798599	.	G	A	14.46	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||3773|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4852|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:798506_798655|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798629	.	C	G	261.54	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||3803|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>C|||||4822|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>C|||||4991|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:798506_798655|||||||||,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798680	.	A	C	562.08	.	AC=36;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||3854|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||4771|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||4940|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798733	.	G	A	929.57	.	AC=46;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||3907|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4718|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4887|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798745	.	G	C	1933.62	.	AC=78;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>C|||||3919|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>G|||||4706|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>G|||||4875|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798757	.	C	A	1050.45	.	AC=54;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>A|||||3931|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>T|||||4694|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>T|||||4863|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798787	.	A	G	7.55	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||3961|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>C|||||4664|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>C|||||4833|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>C|||||4996|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798801	rs12132517	G	A	6064.78	.	AC=93;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||3975|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4650|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4819|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4982|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798825	.	C	T	1639.34	.	AC=71;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||3999|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||4626|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||4795|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4958|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798835	.	A	G	34.77	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||4009|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>C|||||4616|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>C|||||4785|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>C|||||4948|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798872	.	A	G	401.55	.	AC=26;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||4046|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>C|||||4579|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>C|||||4748|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>C|||||4911|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	798959	rs11240777	G	A	35117.36	.	AC=392;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4133|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4492|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4661|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4824|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799002	.	G	A	965.39	.	AC=46;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4176|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4449|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4618|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4781|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799079	.	G	A	5284.31	.	AC=48;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4253|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4372|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4541|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4704|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799101	.	T	A	1351.07	.	AC=47;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>A|||||4275|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>T|||||4350|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>T|||||4519|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>T|||||4682|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799104	.	A	C	305.31	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||4278|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||4347|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||4516|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||4679|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799122	.	G	A	76.8	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4296|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4329|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4498|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4661|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799209	.	G	A	201.03	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4383|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4242|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4411|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4574|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799275	.	C	T	54.02	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4449|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||4176|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||4345|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4508|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799277	.	C	T	20.14	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4451|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||4174|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||4343|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4506|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799306	.	A	C	1147.49	.	AC=72;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||4480|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||4145|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||4314|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||4477|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799346	.	C	A	61.69	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>A|||||4520|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>T|||||4105|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>T|||||4274|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>T|||||4437|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799389	.	G	A	188.12	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4563|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||4062|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||4231|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4394|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799399	.	G	T	265.24	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||4573|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>A|||||4052|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>A|||||4221|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>A|||||4384|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799447	.	C	T	82.14	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4621|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||4004|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||4173|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4336|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:799426_799575|||||||||,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799463	rs4245756	T	C	78289.45	.	AC=1064;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||4637|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||3988|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||4157|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||4320|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:799426_799575|||||||||,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799499	.	T	C	1616.97	.	AC=58;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>C|||||4673|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||3952|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||4121|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||4284|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:799426_799575|||||||||,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799595	.	A	G	46.61	.	AC=3;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>G|||||4769|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>C|||||3856|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>C|||||4025|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>C|||||4188|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799628	.	G	T	579.71	.	AC=38;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>T|||||4802|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>A|||||3823|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>A|||||3992|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>A|||||4155|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799645	rs115265445	C	T	420.4	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4819|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3806|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3975|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4138|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799657	.	C	T	118.95	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4831|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3794|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3963|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4126|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799671	.	C	T	1199.67	.	AC=65;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4845|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3780|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3949|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4112|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799675	.	G	A	1106.74	.	AC=66;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4849|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||3776|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||3945|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4108|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799730	.	C	T	43.38	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4904|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3721|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3890|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4053|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799763	.	G	A	114.42	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606G>A|||||4937|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||3688|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||3857|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||4020|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799770	rs56737117	C	T	2384.91	.	AC=46;ANN=T|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>T|||||4944|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3681|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3850|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||4013|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799776	.	T	G	41.42	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606T>G|||||4950|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>C|||||3675|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>C|||||3844|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>C|||||4007|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799794	.	A	C	149.07	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606A>C|||||4968|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||3657|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||3826|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||3989|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799808	.	C	G	283.61	.	AC=31;ANN=G|downstream_gene_variant|MODIFIER|LINC01128|ENSG00000228794|transcript|ENST00000445118|lincRNA||n.*6606C>G|||||4982|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>C|||||3643|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>C|||||3812|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>C|||||3975|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799879	.	C	T	1375.18	.	AC=27;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3572|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3741|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||3904|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799886	.	G	C	80.52	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>G|||||3565|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>G|||||3734|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>G|||||3897|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	799888	.	G	A	153.83	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||3563|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||3732|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||3895|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800001	.	C	T	320.82	.	AC=24;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3450|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3619|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||3782|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800007	rs6681049	T	C	57504.07	.	AC=976;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||3444|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||3613|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||3776|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800053	.	A	G	240.83	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>C|||||3398|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>C|||||3567|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>C|||||3730|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800105	.	A	C	1084.81	.	AC=45;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||3346|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||3515|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||3678|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800169	.	G	A	24.59	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||3282|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||3451|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||3614|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:800166_800315|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800193	.	A	T	2553.34	.	AC=40;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>A|||||3258|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>A|||||3427|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>A|||||3590|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:800166_800315|||||||||,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800204	.	T	C	732.01	.	AC=31;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||3247|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||3416|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||3579|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:800166_800315|||||||||,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800217	.	C	A	182.0	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>T|||||3234|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>T|||||3403|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>T|||||3566|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:800166_800315|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800256	rs2980290	A	G	288.13	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>C|||||3195|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>C|||||3364|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>C|||||3527|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:800166_800315|||||||||,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800291	rs2980289	T	G	172.32	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>C|||||3160|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>C|||||3329|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>C|||||3492|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:800166_800315|||||||||,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800362	.	A	C	178.65	.	AC=17;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||3089|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||3258|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||3421|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800383	rs4951931	C	T	57240.49	.	AC=902;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||3068|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3237|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||3400|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800450	.	T	C	667.17	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||3001|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||3170|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||3333|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800488	.	C	T	235.69	.	AC=24;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||2963|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||3132|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||3295|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800588	.	A	C	120.6	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||2863|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||3032|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||3195|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800677	.	G	A	232.48	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||2774|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||2943|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||3106|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800694	.	C	T	20.01	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||2757|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||2926|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||3089|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800719	.	G	T	15.47	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>A|||||2732|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>A|||||2901|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>A|||||3064|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800830	rs116737746	C	T	659.02	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||2621|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||2790|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||2953|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800970	.	G	C	1646.04	.	AC=58;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>G|||||2481|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>G|||||2650|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>G|||||2813|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800977	.	C	T	20.65	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||2474|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||2643|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||2806|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	800998	.	G	A	20.11	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||2453|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||2622|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||2785|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801044	.	A	C	95.48	.	AC=8;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||2407|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||2576|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||2739|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801046	.	G	A	34.12	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||2405|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||2574|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||2737|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801115	.	T	C	59.27	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||2336|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||2505|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||2668|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801136	.	C	T	121.6	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||2315|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||2484|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||2647|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801161	.	C	T	176.84	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||2290|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||2459|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||2622|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801179	.	C	T	80.53	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||2272|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||2441|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||2604|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801180	.	G	T	34.87	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>A|||||2271|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>A|||||2440|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>A|||||2603|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801467	rs61768212	G	C	15077.29	.	AC=177;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>G|||||1984|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>G|||||2153|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>G|||||2316|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801525	.	C	T	61.2	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1926|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||2095|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||2258|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801536	rs79373928	T	G	574.32	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>C|||||1915|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>C|||||2084|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>C|||||2247|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801588	.	G	A	58.01	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1863|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||2032|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||2195|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:801566_801715|||||||||,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801661	rs12132974	C	T	2412.48	.	AC=60;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1790|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1959|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||2122|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:801566_801715|||||||||,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801680	rs12134490	A	C	2596.42	.	AC=58;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||1771|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||1940|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||2103|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:801566_801715|||||||||,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801709	.	A	C	117.54	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>G|||||1742|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>G|||||1911|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>G|||||2074|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:801566_801715|||||||||,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801745	.	C	G	125.36	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>C|||||1706|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>C|||||1875|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>C|||||2038|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801777	.	G	A	97.1	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1674|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1843|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||2006|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801787	.	C	G	660.94	.	AC=12;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>C|||||1664|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>C|||||1833|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>C|||||1996|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801821	.	T	C	12.33	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||1630|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||1799|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||1962|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801848	rs114911728	C	A	519.09	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>T|||||1603|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>T|||||1772|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>T|||||1935|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801858	rs17276806	C	T	7252.35	.	AC=60;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1593|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1762|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1925|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801943	rs7516866	C	T	87065.45	.	AC=924;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1508|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1677|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1840|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801986	rs12744166	T	A	1268.56	.	AC=84;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>T|||||1465|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>T|||||1634|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>T|||||1797|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	801995	rs7553084	G	A	18421.91	.	AC=327;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1456|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1625|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1788|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802006	rs9700144	T	C	6751.48	.	AC=221;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||1445|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||1614|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||1777|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802026	rs7553096	G	A	13297.28	.	AC=291;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1425|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1594|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1757|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802035	rs12744180	T	A	521.93	.	AC=35;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>T|||||1416|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>T|||||1585|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>T|||||1748|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802044	rs56287255	G	A	103.52	.	AC=15;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1407|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1576|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1739|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802055	rs56158403	C	T	6.67	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1396|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1565|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1728|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802082	.	C	T	100.75	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1369|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1538|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1701|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802084	rs55860554	A	T	275.43	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>A|||||1367|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>A|||||1536|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>A|||||1699|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802086	.	C	T	532.08	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1365|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1534|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1697|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802093	rs7553197	G	A	20556.27	.	AC=476;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1358|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1527|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1690|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802104	rs12566644	T	C	379.26	.	AC=38;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||1347|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||1516|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||1679|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802124	.	G	A	1532.44	.	AC=78;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1327|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1496|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1659|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802133	rs12744328	T	A	198.03	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>T|||||1318|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>T|||||1487|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>T|||||1650|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802142	.	G	A	153.49	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1309|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1478|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1641|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802173	.	G	A	354.53	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1278|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1447|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1610|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802191	rs71507475	G	A	7876.64	.	AC=192;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1260|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1429|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1592|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802222	rs10793769	G	A	7209.83	.	AC=187;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1229|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1398|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1561|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802240	rs79553571	G	A	13041.36	.	AC=278;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1211|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1380|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1543|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802271	.	G	A	776.41	.	AC=65;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1180|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1349|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1512|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802278	.	C	T	110.7	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1173|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1342|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1505|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802280	.	A	T	1007.28	.	AC=70;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>A|||||1171|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>A|||||1340|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>A|||||1503|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802289	rs112217855	G	A	1636.61	.	AC=93;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1162|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1331|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1494|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802292	.	G	A	295.13	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1159|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1328|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1491|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802298	.	C	T	142.09	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1153|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1322|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1485|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802314	.	C	T	350.32	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1137|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1306|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1469|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802320	rs12565310	G	A	40975.97	.	AC=518;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1131|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1300|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1463|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802329	rs112973433	A	T	230.35	.	AC=27;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807T>A|||||1122|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>A|||||1291|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>A|||||1454|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802338	rs111842463	G	A	14828.4	.	AC=220;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||1113|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1282|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1445|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802347	.	C	T	1018.51	.	AC=36;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1104|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1273|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1436|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802349	.	C	T	1371.33	.	AC=51;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1102|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1271|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1434|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802394	.	T	C	259.82	.	AC=17;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||1057|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||1226|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||1389|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802398	rs111444624	C	T	2739.76	.	AC=44;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||1053|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1222|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1385|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802426	.	G	C	57.4	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>G|||||1025|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>G|||||1194|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>G|||||1357|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802496	rs10157494	C	T	9422.29	.	AC=150;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||955|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||1124|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1287|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802516	.	G	A	278.44	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||935|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1104|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1267|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802565	rs61768214	G	A	520.15	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>T|||||886|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>T|||||1055|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||1218|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802624	.	C	T	96.65	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||827|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||996|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1159|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802660	.	C	T	69.58	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||791|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||960|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||1123|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802671	.	T	G	130.91	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>C|||||780|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>C|||||949|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>C|||||1112|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802675	.	C	A	61.65	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>T|||||776|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>T|||||945|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>T|||||1108|,A|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802818	.	C	T	35.68	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||633|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||802|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||965|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802856	.	C	T	2347.99	.	AC=59;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||595|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||764|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||927|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802889	.	C	T	67.73	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||562|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||731|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||894|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802905	.	T	C	515.86	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||546|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||715|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||878|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802916	.	C	T	161.03	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||535|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||704|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||867|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	802923	.	G	T	72.12	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807C>A|||||528|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>A|||||697|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>A|||||860|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	803192	.	C	T	40.05	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>A|||||259|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>A|||||428|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>A|||||591|,T|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	803331	.	C	G	102.12	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807G>C|||||120|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504G>C|||||289|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>C|||||452|,G|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	803432	.	T	C	61.23	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.*1807A>G|||||19|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||188|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||351|,C|intergenic_region|MODIFIER|LINC01128-FAM41C|ENSG00000228794-ENSG00000230368|intergenic_region|ENSG00000228794-ENSG00000230368|||||||||
1	803560	.	A	G	452.91	.	AC=14;ANN=G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504T>C|||||60|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446T>C|||||223|,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1698T>C||||||
1	803582	rs17080269	G	T	443.41	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504C>A|||||38|,T|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>A|||||201|,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1676C>A||||||
1	803596	.	T	C	584.32	.	AC=38;ANN=C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.*504A>G|||||24|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>G|||||187|,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1662A>G||||||
1	803651	.	T	A	33.62	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446A>T|||||132|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1607A>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|4/4|n.473A>T||||||
1	803688	.	C	G	187.11	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>G|||||4984|,G|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446G>C|||||95|,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1570G>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|4/4|n.436G>C||||||
1	803702	.	G	A	192.5	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||4970|,A|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>T|||||81|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1556C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|4/4|n.422C>T||||||
1	803706	.	G	C	517.03	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>C|||||4966|,C|downstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.*446C>G|||||77|,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1552C>G||||||,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|4/4|n.418C>G||||||
1	803796	.	G	A	29.18	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||4876|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1462C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|4/4|n.328C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|3/3|n.433C>T||||||
1	804013	rs117720955	G	A	7819.05	.	AC=111;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||4659|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1245C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|3/4|n.207C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|3/3|n.216C>T||||||
1	804015	.	A	G	843.73	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||4657|,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1243T>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|3/4|n.205T>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|3/3|n.214T>C||||||
1	804049	.	G	A	58.65	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||4623|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|3/3|n.1209C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|3/4|n.171C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|3/3|n.180C>T||||||
1	804073	.	G	A	699.72	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||4599|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-18C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-18C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-18C>T||||||
1	804090	.	C	T	315.46	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||4582|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-35G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-35G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-35G>A||||||
1	804115	rs9725068	G	A	44224.96	.	AC=863;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||4557|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-60C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-60C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-60C>T||||||
1	804119	.	A	T	60.75	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>T|||||4553|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-64T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-64T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-64T>A||||||
1	804121	.	C	T	42.18	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||4551|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-66G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-66G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-66G>A||||||
1	804135	.	A	G	176.86	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||4537|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-80T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-80T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-80T>C||||||
1	804152	.	T	G	414.88	.	AC=29;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>G|||||4520|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-97A>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-97A>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-97A>C||||||
1	804168	.	C	A	655.36	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>A|||||4504|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-113G>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-113G>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-113G>T||||||
1	804180	.	A	T	910.66	.	AC=44;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>T|||||4492|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-125T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-125T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-125T>A||||||
1	804188	.	G	C	1116.85	.	AC=45;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>C|||||4484|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-133C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-133C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-133C>G||||||
1	804269	.	G	C	322.11	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>C|||||4403|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-214C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-214C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-214C>G||||||
1	804306	.	A	G	326.45	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||4366|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-251T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.165-251T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-251T>C||||||
1	804540	rs11240778	T	C	66184.91	.	AC=1034;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>C|||||4132|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-485A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.164+368A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-485A>G||||||
1	804541	.	G	A	46.2	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||4131|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-486C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.164+367C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-486C>T||||||
1	804668	.	A	G	52.17	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||4004|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-613T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.164+240T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-613T>C||||||
1	804682	.	C	T	11.29	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||3990|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-627G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.164+226G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-627G>A||||||
1	804759	rs7526310	C	T	10031.51	.	AC=172;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||3913|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-704G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.164+149G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-704G>A||||||
1	804764	.	T	C	24.32	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>C|||||3908|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-709A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.164+144A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-709A>G||||||
1	804786	.	A	T	105.98	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>T|||||3886|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-731T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|2/3|n.164+122T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-731T>A||||||
1	804979	rs114479279	A	T	443.22	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>T|||||3693|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-924T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|1/3|n.117-24T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-924T>A||||||
1	805109	rs112221884	G	A	314.65	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||3563|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-1054C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|1/3|n.117-154C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-1054C>T||||||
1	805498	.	C	T	72.98	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||3174|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-1443G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-1443G>A||||||,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|1/4|n.84G>A||||||
1	805556	rs72631880	T	A	2247.34	.	AC=112;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>A|||||3116|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-1501A>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-1501A>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA|1/4|n.26A>T||||||
1	805775	.	A	C	43.57	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>C|||||2897|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>G|||||194|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-1720T>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-1720T>G||||||
1	805839	.	A	G	62.26	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||2833|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||258|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-1784T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-1784T>C||||||
1	805967	.	C	T	594.5	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||2705|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||386|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-1912G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-1912G>A||||||
1	806070	.	T	G	24.41	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>G|||||2602|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>C|||||489|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-2015A>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-2015A>C||||||
1	806078	.	A	C	27.13	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>C|||||2594|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>G|||||497|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-2023T>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-2023T>G||||||
1	806111	rs12088187	A	G	1640.62	.	AC=29;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||2561|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||530|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-2056T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-2056T>C||||||
1	806467	.	C	A	198.46	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>A|||||2205|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>T|||||886|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-2412G>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-2412G>T||||||
1	806523	.	T	C	424.2	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>C|||||2149|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>G|||||942|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1203-2468A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-2468A>G||||||
1	806911	.	T	A	897.19	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>A|||||1761|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>T|||||1330|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+2581A>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-2856A>T||||||
1	807039	rs117292337	T	A	717.51	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>A|||||1633|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>T|||||1458|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+2453A>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.174-2984A>T||||||
1	807512	rs10751454	A	G	67213.92	.	AC=1035;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||1160|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||1931|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1980T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2908T>C||||||
1	807704	.	G	A	22.33	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||968|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2123|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1788C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2716C>T||||||
1	807761	rs4951932	C	A	73429.39	.	AC=996;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>A|||||911|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>T|||||2180|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1731G>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2659G>T||||||
1	807887	.	C	T	821.52	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||785|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2306|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1605G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2533G>A||||||
1	807892	rs116232561	A	G	211.48	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||780|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||2311|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1600T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2528T>C||||||
1	807946	.	G	A	2245.4	.	AC=72;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||726|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2365|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1546C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2474C>T||||||
1	807994	.	C	T	78.47	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||678|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2413|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1498G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2426G>A||||||
1	807997	rs61768215	G	A	3061.07	.	AC=90;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||675|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2416|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1495C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2423C>T||||||
1	808014	.	G	C	16.09	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>C|||||658|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>G|||||2433|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1478C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2406C>G||||||
1	808015	rs56135305	G	T	203.3	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>T|||||657|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>A|||||2434|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1477C>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2405C>A||||||
1	808025	.	C	T	293.55	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||647|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2444|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1467G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2395G>A||||||
1	808038	.	G	A	141.28	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||634|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2457|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1454C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2382C>T||||||
1	808049	.	G	A	5416.46	.	AC=94;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||623|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2468|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1443C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2371C>T||||||
1	808112	.	A	G	1020.49	.	AC=55;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||560|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||2531|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1380T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2308T>C||||||
1	808128	.	C	T	424.18	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||544|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2547|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1364G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2292G>A||||||
1	808140	rs12738555	T	C	568.49	.	AC=39;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>C|||||532|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>G|||||2559|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1352A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2280A>G||||||
1	808156	rs12733737	A	G	128.89	.	AC=18;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||516|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||2575|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1336T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2264T>C||||||
1	808223	rs4951933	G	C	18754.42	.	AC=478;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>C|||||449|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>G|||||2642|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1269C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2197C>G||||||
1	808235	.	C	T	402.19	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||437|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2654|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1257G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2185G>A||||||
1	808259	.	A	G	1028.68	.	AC=59;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||413|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||2678|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1233T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2161T>C||||||
1	808289	rs113532475	A	T	9477.44	.	AC=163;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>T|||||383|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>A|||||2708|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1203T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2131T>A||||||
1	808320	.	A	G	136.17	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||352|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||2739|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1172T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2100T>C||||||
1	808322	.	A	G	124.28	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||350|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||2741|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1170T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2098T>C||||||
1	808350	.	C	T	2188.8	.	AC=75;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||322|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2769|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1142G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+2070G>A||||||
1	808445	.	C	T	23.71	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||227|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2864|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1047G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1975G>A||||||
1	808469	.	G	A	403.89	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||203|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2888|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+1023C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1951C>T||||||
1	808496	rs6693122	T	C	171.15	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1T>C|||||176|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>G|||||2915|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+996A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1924A>G||||||
1	808522	rs6690115	A	G	559.69	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1A>G|||||150|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||2941|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+970T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1898T>C||||||
1	808527	.	C	T	863.3	.	AC=27;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||145|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2946|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+965G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1893G>A||||||
1	808530	.	G	A	794.55	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||142|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2949|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+962C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1890C>T||||||
1	808532	.	G	A	713.53	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||140|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||2951|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+960C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1888C>T||||||
1	808557	.	C	T	60.29	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||115|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||2976|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+935G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1863G>A||||||
1	808611	.	G	C	397.85	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>C|||||61|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>G|||||3030|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+881C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1809C>G||||||
1	808631	rs11240779	G	A	58907.18	.	AC=775;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||41|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3050|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+861C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1789C>T||||||
1	808642	.	C	T	93.17	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1C>T|||||30|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3061|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+850G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1778G>A||||||
1	808643	.	G	A	42.65	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.-1G>A|||||29|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3062|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+849C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1777C>T||||||
1	808710	.	T	A	157.28	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>T|||||3129|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:808686_808835|||||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+782A>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1710A>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.39T>A||||||
1	808723	rs117906062	C	G	408.51	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>C|||||3142|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:808686_808835|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+769G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1697G>C||||||,G|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.52C>G||||||
1	808724	rs115572781	C	G	201.31	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>C|||||3143|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:808686_808835|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+768G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1696G>C||||||,G|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.53C>G||||||
1	808837	.	G	A	14.37	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3256|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+655C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1583C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.166G>A||||||
1	808861	.	G	A	34.99	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3280|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+631C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1559C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.190G>A||||||
1	808922	rs6594027	G	A	37322.21	.	AC=829;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3341|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+570C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1498C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.251G>A||||||
1	808928	rs11240780	C	T	28749.69	.	AC=639;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3347|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+564G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1492G>A||||||,T|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.257C>T||||||
1	808946	.	C	T	79.83	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3365|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+546G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1474G>A||||||,T|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.275C>T||||||
1	809001	.	G	A	76.83	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3420|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+491C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1419C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.330G>A||||||
1	809022	.	A	G	26.52	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||3441|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+470T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1398T>C||||||,G|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.351A>G||||||
1	809123	rs61768216	G	A	23.59	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3542|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+369C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1297C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.452G>A||||||
1	809178	.	C	T	153.7	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3597|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+314G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1242G>A||||||,T|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.507C>T||||||
1	809237	.	C	G	524.81	.	AC=40;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>C|||||3656|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+255G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1183G>C||||||,G|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.566C>G||||||
1	809238	rs112738735	C	T	181.34	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3657|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+254G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1182G>A||||||,T|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.567C>T||||||
1	809283	.	A	G	45.11	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||3702|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+209T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1137T>C||||||,G|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.612A>G||||||
1	809329	.	C	T	273.31	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3748|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+163G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+1091G>A||||||,T|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.658C>T||||||
1	809453	.	C	T	39.85	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3872|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+39G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+967G>A||||||,T|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.782C>T||||||
1	809469	.	C	T	66.98	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||3888|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/2|n.1202+23G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+951G>A||||||,T|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.798C>T||||||
1	809533	.	G	A	67.5	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||3952|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+887C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1161C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.862G>A||||||
1	809582	rs112115309	T	C	256.8	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>G|||||4001|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+838A>G||||||,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1112A>G||||||,C|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.911T>C||||||
1	809615	.	A	C	236.19	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>G|||||4034|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+805T>G||||||,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1079T>G||||||,C|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.944A>C||||||
1	809622	.	G	A	752.6	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4041|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+798C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1072C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.951G>A||||||
1	809628	.	G	A	71.89	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4047|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+792C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1066C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.957G>A||||||
1	809654	.	T	A	42.25	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>T|||||4073|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+766A>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1040A>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.983T>A||||||
1	809657	.	A	G	68.22	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||4076|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+763T>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1037T>C||||||,G|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.986A>G||||||
1	809681	rs76484423	G	A	1601.28	.	AC=110;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4100|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+739C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1013C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.1010G>A||||||
1	809687	rs80351405	G	C	1598.0	.	AC=112;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>G|||||4106|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+733C>G||||||,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.1007C>G||||||,C|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.1016G>C||||||
1	809700	rs114598413	G	A	2736.57	.	AC=48;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4119|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+720C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.994C>T||||||,A|non_coding_exon_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene|1/1|n.1029G>A||||||
1	809732	.	T	C	245.54	.	AC=33;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>G|||||4151|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||3|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+688A>G||||||,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.962A>G||||||
1	809744	.	A	G	77.33	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||4163|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||15|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+676T>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.950T>C||||||
1	809756	rs117047892	G	A	923.98	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4175|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||27|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+664C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.938C>T||||||
1	809798	.	C	T	51.87	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||4217|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||69|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+622G>A||||||,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.896G>A||||||
1	809846	rs117421153	A	G	51.25	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||4265|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||117|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+574T>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.848T>C||||||
1	809876	rs57181708	A	G	18849.79	.	AC=206;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||4295|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||147|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+544T>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.818T>C||||||
1	809905	.	C	T	410.69	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||4324|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||176|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+515G>A||||||,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.789G>A||||||
1	809927	.	C	T	162.89	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||4346|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||198|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+493G>A||||||,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.767G>A||||||
1	810000	.	C	G	7.63	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>C|||||4419|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||271|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+420G>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.694G>C||||||
1	810013	.	G	C	29.01	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>G|||||4432|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||284|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+407C>G||||||,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.681C>G||||||
1	810029	rs116634681	G	A	1392.46	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4448|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||300|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+391C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.665C>T||||||
1	810280	rs113665055	G	T	886.19	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>A|||||4699|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||551|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+140C>A||||||,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.414C>A||||||
1	810286	rs28410559	G	A	22568.33	.	AC=319;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4705|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||557|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+134C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.408C>T||||||
1	810290	rs111775265	G	A	626.17	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4709|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||561|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+130C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.404C>T||||||
1	810320	.	C	T	203.17	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||4739|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||591|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+100G>A||||||,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.374G>A||||||
1	810389	rs116428471	T	C	102.42	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1A>G|||||4808|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||660|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+31A>G||||||,C|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.305A>G||||||
1	810415	.	C	T	34.26	.	AC=1;ANN=T|splice_region_variant&intron_variant|LOW|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/2|n.173+5G>A||||||,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>A|||||4834|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||686|,T|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.279G>A||||||
1	810458	.	G	A	20.99	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4877|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||729|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.236C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/3|n.135C>T||||||
1	810470	.	C	A	24.24	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>T|||||4889|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||741|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.224G>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/3|n.123G>T||||||
1	810480	.	G	A	38.43	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4899|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||751|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.214C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/3|n.113C>T||||||
1	810492	.	G	A	57.48	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1C>T|||||4911|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||763|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.202C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/3|n.101C>T||||||
1	810500	.	C	G	11.14	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1G>C|||||4919|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||771|,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|2/3|n.194G>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|2/3|n.93G>C||||||
1	810577	.	A	G	88.64	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000432963|lincRNA||n.-1T>C|||||4996|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||848|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-42T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-42T>C||||||
1	810648	rs117446482	T	C	528.52	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||919|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-113A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-113A>G||||||
1	810655	.	G	A	13.03	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||926|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-120C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-120C>T||||||
1	810672	rs117830343	T	C	758.42	.	AC=15;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||943|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-137A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-137A>G||||||
1	810739	.	C	G	809.05	.	AC=13;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1010|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-204G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-204G>C||||||
1	810777	.	C	G	396.47	.	AC=15;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1048|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-242G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-242G>C||||||
1	810780	rs58686784	G	C	9228.49	.	AC=161;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1051|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-245C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-245C>G||||||
1	810797	.	A	T	22.62	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>T|||||1068|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-262T>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-262T>A||||||
1	810799	.	G	A	634.52	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||1070|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-264C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-264C>T||||||
1	810941	rs115585575	T	A	59.12	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||1212|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-406A>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-406A>T||||||
1	810942	.	T	C	11.22	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||1213|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-407A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-407A>G||||||
1	811012	.	G	A	144.6	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||1283|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-477C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-477C>T||||||
1	811136	rs114224245	G	C	453.73	.	AC=19;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1407|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-601C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-601C>G||||||
1	811236	.	A	G	123.24	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1507|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811226_811375|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-701T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-701T>C||||||
1	811256	.	A	G	25.06	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1527|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811226_811375|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-721T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-721T>C||||||
1	811270	rs57914339	C	G	535.73	.	AC=55;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1541|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811226_811375|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-735G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-735G>C||||||
1	811286	.	G	A	42.0	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||1557|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811226_811375|||||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-751C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-751C>T||||||
1	811290	rs6683530	G	C	2080.52	.	AC=125;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1561|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811226_811375|||||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-755C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-755C>G||||||
1	811309	.	A	G	165.49	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1580|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811226_811375|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-774T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-774T>C||||||
1	811328	.	C	T	94.08	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1599|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811226_811375|||||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.159-793G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.58-793G>A||||||
1	811381	rs113736132	C	T	199.19	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1652|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+745G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+745G>A||||||
1	811398	.	C	T	18.57	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1669|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+728G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+728G>A||||||
1	811401	rs28720824	T	A	109.08	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||1672|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+725A>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+725A>T||||||
1	811411	.	T	C	250.5	.	AC=22;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||1682|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+715A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+715A>G||||||
1	811421	.	T	C	18.28	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||1692|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+705A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+705A>G||||||
1	811431	.	C	T	304.7	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1702|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+695G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+695G>A||||||
1	811446	.	C	A	44.12	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||1717|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+680G>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+680G>T||||||
1	811452	.	A	G	29.87	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1723|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+674T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+674T>C||||||
1	811456	.	C	G	56.25	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1727|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+670G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+670G>C||||||
1	811461	.	T	C	46.6	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||1732|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+665A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+665A>G||||||
1	811503	.	G	C	103.97	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1774|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+623C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+623C>G||||||
1	811523	.	G	C	115.53	.	AC=16;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1794|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+603C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+603C>G||||||
1	811528	.	T	C	274.96	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||1799|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+598A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+598A>G||||||
1	811565	.	C	T	52.48	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1836|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+561G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+561G>A||||||
1	811570	.	G	C	411.45	.	AC=38;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1841|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+556C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+556C>G||||||
1	811579	.	C	T	83.42	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1850|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+547G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+547G>A||||||
1	811580	.	G	C	194.1	.	AC=18;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1851|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+546C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+546C>G||||||
1	811589	.	C	T	54.88	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1860|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+537G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+537G>A||||||
1	811590	.	G	C	1302.2	.	AC=78;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1861|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+536C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+536C>G||||||
1	811596	rs111716660	A	G	940.91	.	AC=80;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1867|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+530T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+530T>C||||||
1	811600	.	C	G	93.91	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1871|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+526G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+526G>C||||||
1	811610	.	G	C	126.31	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1881|,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+516C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+516C>G||||||
1	811616	.	A	G	792.71	.	AC=70;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1887|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+510T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+510T>C||||||
1	811626	.	A	G	86.48	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1897|,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+500T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+500T>C||||||
1	811629	.	C	T	58.96	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1900|,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+497G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+497G>A||||||
1	811630	.	G	A	2944.14	.	AC=135;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||1901|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+496C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+496C>T||||||
1	811646	.	A	G	43.73	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1917|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+480T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+480T>C||||||
1	811662	.	T	C	214.44	.	AC=27;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||1933|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+464A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+464A>G||||||
1	811667	.	G	C	63.25	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||1938|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+459C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+459C>G||||||
1	811680	.	C	G	77.68	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1951|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+446G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+446G>C||||||
1	811686	.	A	G	178.57	.	AC=21;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1957|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+440T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+440T>C||||||
1	811690	.	C	G	51.58	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1961|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+436G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+436G>C||||||
1	811693	.	C	G	349.82	.	AC=34;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1964|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+433G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+433G>C||||||
1	811696	.	A	G	212.3	.	AC=34;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1967|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+430T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+430T>C||||||
1	811700	.	C	G	497.8	.	AC=48;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||1971|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+426G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+426G>C||||||
1	811705	.	C	T	28.16	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||1976|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+421G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+421G>A||||||
1	811716	.	A	G	1385.51	.	AC=84;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||1987|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+410T>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+410T>C||||||
1	811735	rs114617474	T	C	2785.97	.	AC=122;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||2006|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+391A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+391A>G||||||
1	811740	.	G	C	52.61	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||2011|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+386C>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+386C>G||||||
1	811755	rs115321250	T	C	1965.54	.	AC=102;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||2026|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+371A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+371A>G||||||
1	811765	rs72631881	C	T	8033.02	.	AC=260;ANN=T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||2036|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+361G>A||||||,T|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+361G>A||||||
1	811785	.	T	C	980.29	.	AC=64;ANN=C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||2056|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+341A>G||||||,C|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+341A>G||||||
1	811790	.	C	G	108.19	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||2061|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:811646_811795|||||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+336G>C||||||,G|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+336G>C||||||
1	812063	rs117300352	G	A	389.96	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2334|,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/2|n.158+63C>T||||||,A|intron_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/2|n.57+63C>T||||||
1	812136	.	C	G	163.22	.	AC=4;ANN=G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||2407|,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/3|n.148G>C||||||,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/3|n.47G>C||||||
1	812157	.	G	A	83.21	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2428|,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/3|n.127C>T||||||,A|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA|1/3|n.26C>T||||||
1	812222	.	C	G	404.88	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||40|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||2493|,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/3|n.62G>C||||||
1	812267	rs7541694	A	G	41697.64	.	AC=913;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||85|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||2538|,G|non_coding_exon_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA|1/3|n.17T>C||||||
1	812284	rs7545373	C	G	46678.35	.	AC=902;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||1|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||102|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||2555|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812302	.	G	A	988.28	.	AC=71;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||19|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||120|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2573|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812312	.	C	T	1071.82	.	AC=75;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||29|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||130|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||2583|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812326	.	G	A	912.55	.	AC=63;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||43|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||144|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2597|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812366	.	C	T	717.44	.	AC=50;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||83|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||184|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||2637|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812389	.	G	A	12.0	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||106|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||207|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2660|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812393	.	C	T	41.16	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||110|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||211|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||2664|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812437	.	C	T	66.78	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||154|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||255|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||2708|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812450	rs72631882	A	G	1979.81	.	AC=115;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||167|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||268|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||2721|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812455	.	T	C	43.59	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||172|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||273|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||2726|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812476	.	A	G	91.42	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||193|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||294|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||2747|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812483	.	T	A	96.55	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||200|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||301|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||2754|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812540	.	G	A	65.36	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||257|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||358|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2811|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812552	rs116880742	G	C	43.82	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>G|||||269|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>G|||||370|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||2823|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812554	.	G	A	568.96	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||271|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||372|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2825|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:812406_812555|||||||||,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812585	.	C	T	367.09	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||302|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||403|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||2856|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812607	.	T	C	76.04	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||324|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||425|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||2878|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812625	.	G	T	153.41	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||342|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||443|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||2896|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812641	.	G	A	163.63	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||358|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||459|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||2912|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812670	rs4970340	A	C	247.23	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||387|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||488|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>C|||||2941|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812679	.	C	T	147.41	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||396|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||497|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||2950|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812694	.	T	A	67.53	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||411|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||512|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||2965|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812717	.	G	T	158.48	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||434|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||535|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||2988|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812743	rs6605064	C	T	10756.64	.	AC=193;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||460|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||561|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||3014|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812751	rs4246500	T	C	54773.2	.	AC=940;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||468|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||569|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||3022|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812760	.	C	T	33.24	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||477|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||578|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||3031|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812897	.	C	G	378.76	.	AC=32;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||614|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||715|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||3168|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812902	rs115278475	C	G	457.46	.	AC=40;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||619|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||720|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||3173|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812905	rs116735768	C	T	645.45	.	AC=52;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||622|,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||723|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||3176|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812949	.	T	C	89.18	.	AC=21;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||666|,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||767|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||3220|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	812976	rs28520213	G	A	4673.79	.	AC=56;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||693|,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||794|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3247|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813030	.	C	G	357.96	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||747|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||848|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||3301|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813034	rs59771807	A	G	1644.25	.	AC=37;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||751|,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||852|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||3305|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813067	rs75381779	T	C	9710.16	.	AC=222;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||784|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||4976|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||885|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||3338|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813089	.	G	A	239.38	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||806|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4954|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||907|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3360|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813109	.	A	C	2242.46	.	AC=146;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||826|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||4934|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||927|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>C|||||3380|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813112	.	T	C	2086.05	.	AC=144;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||829|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||4931|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||930|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||3383|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813145	rs114943183	C	G	308.07	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||862|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||4898|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||963|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||3416|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813168	.	G	A	278.65	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||885|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4875|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||986|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3439|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813184	.	A	G	641.61	.	AC=45;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||901|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||4859|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1002|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||3455|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813212	.	G	A	418.04	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||929|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4831|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1030|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3483|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813222	.	T	C	376.56	.	AC=42;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||939|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||4821|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||1040|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||3493|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813246	.	G	A	75.66	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||963|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4797|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1064|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3517|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813250	.	G	T	588.89	.	AC=57;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||967|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||4793|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||1068|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||3521|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813288	rs78218961	G	T	24343.74	.	AC=309;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||1005|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||4755|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||1106|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||3559|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813291	rs77839841	A	G	23486.54	.	AC=303;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1008|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||4752|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1109|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||3562|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813302	.	T	G	14.24	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||1019|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||4741|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||1120|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>G|||||3573|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813317	rs115481458	C	A	10800.83	.	AC=186;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||1034|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||4726|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||1135|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||3588|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813331	rs116337257	G	T	934.71	.	AC=74;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||1048|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||4712|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||1149|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||3602|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813334	.	A	C	480.52	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||1051|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||4709|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||1152|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>C|||||3605|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813340	rs115626508	G	A	428.12	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1057|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4703|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1158|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3611|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813353	.	C	A	14.87	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||1070|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||4690|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||1171|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||3624|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813377	.	G	T	1166.4	.	AC=79;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||1094|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||4666|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||1195|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||3648|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813385	.	G	T	1619.64	.	AC=111;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||1102|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||4658|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||1203|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||3656|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813397	.	G	C	2359.21	.	AC=129;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>G|||||1114|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||4646|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>G|||||1215|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||3668|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813417	rs113638373	G	C	7778.34	.	AC=169;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>G|||||1134|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||4626|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>G|||||1235|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||3688|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813439	rs80120334	G	A	10968.14	.	AC=207;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1156|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4604|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1257|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3710|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813448	rs112923974	T	G	247.03	.	AC=28;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||1165|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||4595|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||1266|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>G|||||3719|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813527	.	T	G	110.89	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||1244|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||4516|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||1345|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>G|||||3798|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813581	.	C	A	121.44	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||1298|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||4462|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||1399|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||3852|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813602	.	G	A	6.36	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1319|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4441|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1420|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3873|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813640	rs4246499	A	G	24269.0	.	AC=682;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1357|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||4403|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1458|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||3911|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813682	.	G	A	193.13	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1399|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4361|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1500|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||3953|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813698	.	A	C	51.18	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||1415|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||4345|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||1516|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>C|||||3969|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813710	.	A	G	26.06	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1427|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||4333|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1528|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||3981|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813729	.	G	A	146.01	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1446|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4314|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1547|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4000|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813747	rs4970388	G	A	45859.73	.	AC=834;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1464|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4296|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1565|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4018|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813836	rs116396760	C	T	215.46	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||1553|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||4207|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||1654|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4107|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813837	.	G	A	194.2	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1554|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4206|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1655|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4108|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813864	.	G	A	2784.09	.	AC=112;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1581|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4179|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1682|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4135|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813916	.	C	T	445.41	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||1633|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||4127|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||1734|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4187|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813918	rs115860336	T	A	2615.8	.	AC=142;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||1635|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||4125|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||1736|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||4189|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813947	rs75914324	G	T	2866.6	.	AC=187;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||1664|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||4096|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||1765|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||4218|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813963	.	C	T	1610.73	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||1680|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||4080|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||1781|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4234|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813974	.	T	C	1559.68	.	AC=93;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||1691|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||4069|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||1792|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||4245|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813977	.	C	G	1812.32	.	AC=95;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||1694|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||4066|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||1795|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||4248|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	813996	rs28403457	T	C	7579.36	.	AC=116;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||1713|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||4047|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||1814|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||4267|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814018	.	T	G	6868.6	.	AC=117;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||1735|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||4025|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||1836|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>G|||||4289|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814027	rs113942330	T	C	3227.04	.	AC=134;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||1744|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||4016|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||1845|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||4298|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814028	.	G	A	15.46	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1745|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||4015|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1846|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4299|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814045	rs28483835	C	T	21357.07	.	AC=308;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||1762|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||3998|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||1863|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4316|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814052	.	G	A	7783.25	.	AC=168;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1769|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||3991|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1870|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4323|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814056	.	A	G	312.74	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1773|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3987|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1874|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4327|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814067	rs61768234	G	A	80.04	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||1784|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||3976|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||1885|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4338|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814077	rs28717372	A	G	7888.06	.	AC=147;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1794|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3966|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1895|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4348|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814087	.	C	A	3175.6	.	AC=141;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||1804|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||3956|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||1905|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||4358|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814094	rs61768235	A	G	12806.7	.	AC=276;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1811|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3949|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1912|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4365|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814105	.	C	T	7883.92	.	AC=202;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||1822|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||3938|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||1923|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4376|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814147	rs4268301	G	C	21380.86	.	AC=372;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>G|||||1864|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||3896|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>G|||||1965|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||4418|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814157	.	A	G	7452.33	.	AC=171;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1874|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3886|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||1975|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4428|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814160	.	C	G	10620.13	.	AC=238;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||1877|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||3883|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||1978|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>G|||||4431|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814173	.	A	T	10014.19	.	AC=226;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||1890|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||3870|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||1991|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>T|||||4444|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814215	rs4468103	A	G	13360.13	.	AC=245;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1932|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3828|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||2033|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4486|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814230	rs4285652	T	A	14322.61	.	AC=230;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||1947|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||3813|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||2048|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||4501|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814244	.	A	G	14476.75	.	AC=307;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||1961|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3799|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||2062|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4515|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814264	rs4571914	C	T	71815.17	.	AC=936;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||1981|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||3779|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||2082|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4535|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814297	rs72888851	T	A	54627.67	.	AC=529;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||2014|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||3746|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||2115|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||4568|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814300	rs80022136	T	A	55777.95	.	AC=530;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||2017|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||3743|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||2118|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>A|||||4571|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814313	rs115211895	C	T	17169.81	.	AC=278;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||2030|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||3730|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||2131|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4584|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814352	.	A	G	2461.2	.	AC=158;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||2069|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3691|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||2170|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4623|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814365	.	G	C	34.0	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>G|||||2082|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||3678|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>G|||||2183|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>C|||||4636|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814377	.	G	A	201.8	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||2094|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||3666|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||2195|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4648|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814392	rs61768236	C	T	7896.62	.	AC=209;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||2109|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||3651|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||2210|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4663|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814405	rs61768237	T	C	14110.4	.	AC=282;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2122|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||3638|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||2223|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||4676|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814459	rs72466501	T	C	34214.56	.	AC=453;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2176|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||3584|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||2277|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058T>C|||||4730|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814503	.	C	A	41.68	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||2220|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||3540|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||2321|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||4774|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814514	rs114054328	G	T	2591.57	.	AC=106;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||2231|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||3529|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||2332|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||4785|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814518	rs115205105	C	T	1714.93	.	AC=64;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||2235|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||3525|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||2336|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>T|||||4789|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814535	rs114218195	A	G	387.02	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||2252|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3508|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||2353|,G|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>G|||||4806|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814560	rs116427076	G	T	493.71	.	AC=41;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||2277|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||3483|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||2378|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>T|||||4831|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814609	rs75814620	A	T	23028.45	.	AC=362;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||2326|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||3434|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||2427|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>T|||||4880|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814611	rs76968096	A	C	22670.74	.	AC=365;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||2328|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||3432|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||2429|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>C|||||4882|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814653	.	C	A	85.45	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||2370|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||3390|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||2471|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||4924|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814681	.	A	T	2904.85	.	AC=156;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||2398|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||3362|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||2499|,T|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>T|||||4952|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814694	rs78490906	A	C	16503.46	.	AC=324;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||2411|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||3349|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||2512|,C|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058A>C|||||4965|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814710	rs115294539	G	A	10323.32	.	AC=216;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||2427|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||3333|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||2528|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058G>A|||||4981|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814711	.	C	A	663.42	.	AC=68;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||2428|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||3332|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||2529|,A|downstream_gene_variant|MODIFIER|TUBB8P11|ENSG00000234711|transcript|ENST00000415481|unprocessed_pseudogene||n.*1058C>A|||||4982|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814731	rs80192958	T	C	1777.78	.	AC=122;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2448|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||3312|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||2549|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814742	rs78909760	C	G	736.07	.	AC=69;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||2459|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||3301|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||2560|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814770	rs60101288	T	C	299.98	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2487|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||3273|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||2588|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814870	.	T	G	100.3	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||2587|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||3173|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||2688|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814888	rs116613267	G	A	185.17	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||2605|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||3155|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||2706|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814890	rs114089406	G	A	148.89	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||2607|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||3153|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||2708|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814926	rs75185188	A	G	997.8	.	AC=50;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||2643|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3117|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||2744|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814928	.	G	C	491.43	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>G|||||2645|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||3115|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>G|||||2746|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814974	.	A	G	308.72	.	AC=31;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||2691|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||3069|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||2792|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	814996	.	G	A	10.66	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||2713|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||3047|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||2814|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815054	rs116026498	T	G	123.74	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||2771|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||2989|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||2872|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815079	.	G	A	1334.68	.	AC=76;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||2796|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2964|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||2897|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815155	.	G	A	13853.1	.	AC=219;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||2872|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2888|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||2973|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815158	rs74651055	T	C	27.92	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2875|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2885|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||2976|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815181	rs111526898	G	T	18863.87	.	AC=301;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||2898|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||2862|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||2999|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815197	.	T	C	16272.59	.	AC=269;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2914|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2846|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3015|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815277	.	T	C	429.61	.	AC=40;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2994|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2766|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3095|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815281	rs111466592	T	C	345.1	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||2998|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2762|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3099|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815337	rs77375061	G	T	2323.05	.	AC=103;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||3054|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||2706|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||3155|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815355	rs77443791	T	C	123.42	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||3072|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2688|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3173|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815373	rs75300594	C	T	2900.15	.	AC=119;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3090|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2670|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3191|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815421	rs72888853	T	C	7855.57	.	AC=119;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||3138|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2622|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3239|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815463	rs76825053	T	C	30170.19	.	AC=416;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||3180|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2580|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3281|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815466	rs76005426	A	G	195.66	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3183|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2577|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3284|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815486	.	C	T	228.48	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3203|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2557|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3304|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815497	rs79842705	A	G	53876.23	.	AC=485;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3214|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2546|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3315|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815520	rs61768238	C	T	55480.78	.	AC=461;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3237|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2523|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3338|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815573	rs61768240	C	T	26918.57	.	AC=384;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3290|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2470|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3391|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815601	.	T	C	2853.76	.	AC=155;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||3318|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2442|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3419|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815611	rs75451409	C	T	1356.39	.	AC=97;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3328|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2432|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3429|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815632	.	C	T	88.52	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3349|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2411|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3450|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815662	rs4970339	G	T	50610.11	.	AC=706;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||3379|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||2381|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||3480|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815674	.	T	G	144.11	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||3391|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||2369|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||3492|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815681	rs4970338	G	T	32143.2	.	AC=634;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||3398|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||2362|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||3499|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815692	.	A	T	244.03	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||3409|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||2351|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||3510|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815728	rs111902835	A	G	12178.06	.	AC=253;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3445|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2315|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3546|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815736	.	A	G	1111.27	.	AC=105;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3453|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2307|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3554|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815757	.	G	A	9233.15	.	AC=187;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3474|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2286|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3575|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815815	rs113917337	A	T	11121.46	.	AC=203;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||3532|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||2228|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||3633|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815836	rs116477754	A	G	73.1	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3553|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2207|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3654|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815853	rs79541914	A	G	1675.42	.	AC=123;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3570|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2190|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3671|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815857	.	C	T	1196.43	.	AC=96;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3574|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2186|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3675|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815879	rs79612337	G	A	1025.83	.	AC=80;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3596|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2164|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3697|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815897	.	G	T	22.91	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||3614|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||2146|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||3715|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815923	.	A	G	845.06	.	AC=77;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3640|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2120|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3741|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815935	.	G	T	99.82	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||3652|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||2108|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||3753|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815943	.	G	A	98.75	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3660|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2100|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3761|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815962	rs114573381	A	G	1472.97	.	AC=112;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3679|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||2081|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||3780|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815968	.	G	A	216.17	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3685|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2075|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3786|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	815998	rs112671975	G	A	1331.18	.	AC=72;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3715|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2045|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3816|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816001	rs111789261	G	A	1381.63	.	AC=76;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3718|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||2042|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3819|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816029	rs111424851	T	C	580.36	.	AC=48;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||3746|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||2014|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3847|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816031	.	C	T	2709.18	.	AC=147;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3748|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||2012|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||3849|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816042	rs78374308	T	G	3099.65	.	AC=172;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||3759|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||2001|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||3860|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816068	rs80222280	T	C	1546.89	.	AC=126;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||3785|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1975|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3886|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816120	rs114912685	G	A	185.78	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3837|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1923|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3938|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816141	rs116179678	T	A	818.43	.	AC=70;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||3858|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||1902|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||3959|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816152	.	T	A	168.89	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||3869|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||1891|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||3970|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816157	.	G	A	101.71	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3874|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1886|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3975|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816173	.	G	A	184.36	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3890|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1870|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||3991|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816180	.	T	C	245.13	.	AC=41;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||3897|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1863|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||3998|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816181	rs77174305	T	G	1930.68	.	AC=131;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||3898|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||1862|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||3999|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816203	.	C	T	455.63	.	AC=48;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||3920|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||1840|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||4021|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816216	.	C	G	969.14	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||3933|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||1827|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||4034|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816218	rs75059171	C	G	949.23	.	AC=66;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||3935|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||1825|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||4036|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816220	.	A	G	103.61	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||3937|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||1823|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||4038|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816253	.	G	A	83.01	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||3970|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1790|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4071|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816280	.	T	G	268.6	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||3997|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||1763|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||4098|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816288	.	T	C	40.51	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4005|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1755|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||4106|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816294	rs75823471	T	C	91.44	.	AC=21;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4011|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1749|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||4112|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816334	rs77828698	T	C	985.94	.	AC=61;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4051|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1709|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||4152|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816369	rs115508806	T	A	114.34	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||4086|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||1674|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||4187|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816395	rs116709925	G	A	530.64	.	AC=60;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4112|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1648|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4213|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816405	rs114771774	G	A	36.44	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4122|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1638|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4223|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816407	.	A	T	804.97	.	AC=76;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||4124|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||1636|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||4225|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816410	.	C	A	24.57	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||4127|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||1633|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||4228|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816429	.	T	G	1603.56	.	AC=114;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||4146|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||1614|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||4247|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816453	rs115855291	T	G	1558.28	.	AC=108;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||4170|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||1590|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||4271|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816477	.	G	A	363.82	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4194|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1566|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4295|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816515	rs61768241	T	A	269.03	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>T|||||4232|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||1528|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>T|||||4333|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816567	rs61768242	G	A	17850.53	.	AC=301;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4284|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1476|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4385|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816570	.	G	T	1015.6	.	AC=91;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||4287|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||1473|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||4388|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816583	.	A	C	570.28	.	AC=45;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||4300|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||1460|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||4401|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816597	rs74782147	C	T	225.17	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||4314|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||1446|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||4415|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816608	rs74805446	C	A	2818.78	.	AC=136;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||4325|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||1435|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>T|||||4426|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816609	rs76264987	T	G	2790.09	.	AC=140;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||4326|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||1434|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||4427|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816652	.	T	G	501.06	.	AC=44;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||4369|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||1391|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||4470|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816658	rs79667870	T	C	1849.89	.	AC=120;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4375|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1385|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||4476|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816680	rs77482323	G	T	1765.84	.	AC=97;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||4397|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||1363|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||4498|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816682	rs75468428	G	A	1662.53	.	AC=91;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4399|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1361|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4500|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816696	rs113208647	G	T	879.35	.	AC=74;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||4413|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||1347|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||4514|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816697	.	A	T	535.3	.	AC=47;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||4414|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||1346|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||4515|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816725	rs72888862	A	G	14433.7	.	AC=250;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||4442|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||1318|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||4543|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816736	rs112557229	G	T	20865.02	.	AC=321;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||4453|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||1307|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>A|||||4554|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816784	rs72888864	T	C	2237.67	.	AC=109;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4501|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1259|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||4602|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816789	rs74223849	G	A	1297.47	.	AC=67;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4506|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1254|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4607|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816803	rs79191944	A	G	169.69	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||4520|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||1240|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||4621|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816820	.	A	T	71.8	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||4537|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||1223|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||4638|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816834	.	A	C	122.49	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>G|||||4551|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||1209|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>G|||||4652|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816867	rs78673651	G	A	584.44	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4584|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1176|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4685|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816892	rs80168886	A	G	1519.41	.	AC=111;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||4609|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||1151|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||4710|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816911	.	G	A	224.2	.	AC=34;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4628|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1132|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4729|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816913	rs76737509	G	A	9261.58	.	AC=184;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4630|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1130|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4731|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816922	rs76084002	A	T	60.6	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||4639|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||1121|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||4740|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816929	rs113679414	T	C	8932.0	.	AC=153;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4646|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1114|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||4747|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816944	rs77437754	T	C	25077.41	.	AC=371;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4661|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||1099|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>G|||||4762|,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816948	.	G	A	451.74	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4665|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||1095|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1C>T|||||4766|,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816956	rs79222931	A	T	2682.23	.	AC=121;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||4673|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||1087|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||4774|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816972	rs80078473	T	G	20770.99	.	AC=301;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>C|||||4689|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||1071|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1A>C|||||4790|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816995	rs72888865	A	G	17943.22	.	AC=230;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>C|||||4712|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||1048|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>C|||||4813|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	816996	.	C	T	1279.08	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||4713|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||1047|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>A|||||4814|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817009	.	A	T	423.22	.	AC=49;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||4726|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||1034|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1T>A|||||4827|,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817174	rs72888866	C	G	162.99	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>C|||||4891|,G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||869|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000427857|lincRNA||n.-1G>C|||||4992|,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817185	.	G	T	138.96	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>A|||||4902|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||858|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817194	rs115711201	C	T	130.82	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>A|||||4911|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||849|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817234	rs4970387	A	T	58723.44	.	AC=882;ANN=T|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1T>A|||||4951|,T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>T|||||809|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817244	rs114224694	T	C	419.8	.	AC=36;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1A>G|||||4961|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||799|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817251	rs114800682	G	A	539.85	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>T|||||4968|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||792|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817273	.	C	A	486.59	.	AC=37;ANN=A|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1G>T|||||4990|,A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||770|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817281	.	G	C	1323.88	.	AC=99;ANN=C|upstream_gene_variant|MODIFIER|FAM41C|ENSG00000230368|transcript|ENST00000446136|lincRNA||n.-1C>G|||||4998|,C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||762|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817305	rs111247438	C	G	21008.73	.	AC=357;ANN=G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||738|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817306	.	C	T	1079.45	.	AC=72;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||737|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817316	.	G	A	77.81	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||727|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817327	.	T	G	18.2	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>G|||||716|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817341	.	A	C	240.37	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||702|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817382	rs112241155	C	T	17100.56	.	AC=286;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||661|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817392	.	C	A	10.97	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||651|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817396	rs112724595	G	A	9634.19	.	AC=196;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||647|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817413	.	T	C	43.74	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||630|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817442	.	C	T	1167.23	.	AC=74;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||601|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817461	.	T	A	430.94	.	AC=45;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||582|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817472	.	A	G	108.67	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||571|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817487	rs116200329	G	C	489.97	.	AC=41;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||556|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817490	rs115010792	C	A	666.6	.	AC=48;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||553|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817522	.	C	T	1164.69	.	AC=86;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||521|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817546	.	G	A	2324.94	.	AC=129;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||497|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817569	.	C	G	7582.33	.	AC=144;ANN=G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||474|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817612	rs116263778	C	T	9158.95	.	AC=142;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||431|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817621	.	T	C	7272.0	.	AC=124;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||422|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817645	.	G	A	2672.6	.	AC=119;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||398|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817693	.	C	T	1771.79	.	AC=95;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||350|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817725	rs80086372	G	A	2028.72	.	AC=100;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||318|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817748	rs72888871	G	C	1971.49	.	AC=107;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||295|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817765	rs79439516	G	A	202.04	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>A|||||278|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817799	rs72888872	T	A	696.59	.	AC=52;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>A|||||244|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817803	.	G	T	666.87	.	AC=49;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||240|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817835	rs61768243	C	G	1626.13	.	AC=105;ANN=G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>G|||||208|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817842	.	A	G	7676.89	.	AC=148;ANN=G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||201|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817880	.	C	A	49.59	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||163|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817896	.	A	C	184.06	.	AC=22;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>C|||||147|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817898	rs76099411	A	G	245.51	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1A>G|||||145|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817901	rs61768245	G	T	40620.21	.	AC=442;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>T|||||142|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817905	.	T	C	12335.65	.	AC=192;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1T>C|||||138|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817954	rs72888874	G	C	860.13	.	AC=49;ANN=C|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1G>C|||||89|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817967	.	C	A	2037.69	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>A|||||76|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	817980	rs61768247	C	T	9623.89	.	AC=188;ANN=T|upstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.-1C>T|||||63|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|FAM41C-AL645608.2|ENSG00000230368-ENSG00000269308|intergenic_region|ENSG00000230368-ENSG00000269308|||||||||
1	818077	rs61768249	C	T	76.35	.	AC=11;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+19C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818132	rs55968247	C	A	185.61	.	AC=3;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+74C>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818187	rs117379192	C	A	1472.91	.	AC=31;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+129C>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818215	rs115607230	T	C	596.88	.	AC=34;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+157T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818220	.	C	T	75.2	.	AC=10;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+162C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818258	.	G	A	2158.5	.	AC=91;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+200G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818268	rs111347142	T	C	8.62	.	AC=7;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+210T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818276	.	T	C	296.82	.	AC=29;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+218T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818292	.	G	A	94.96	.	AC=2;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+234G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818307	.	G	A	377.6	.	AC=38;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+249G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818367	rs116141920	C	G	1808.02	.	AC=113;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+309C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818404	rs77317138	C	T	880.52	.	AC=72;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+346C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818411	rs79877205	G	A	551.57	.	AC=54;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+353G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818486	rs61768250	C	T	110.27	.	AC=22;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+428C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818490	rs71270013	T	A	951.83	.	AC=75;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+432T>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818500	rs76577235	C	A	13321.59	.	AC=273;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+442C>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818515	rs74492328	G	A	12575.88	.	AC=259;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+457G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818543	rs74512288	A	G	446.69	.	AC=63;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+485A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818549	rs76952377	G	A	254.89	.	AC=40;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+491G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818554	.	G	A	87.5	.	AC=16;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+496G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818621	.	G	A	49.69	.	AC=1;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+563G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818703	.	G	A	60.61	.	AC=8;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+645G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818707	.	T	A	66.82	.	AC=7;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+649T>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818731	rs80194391	C	A	21.28	.	AC=9;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+673C>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818760	.	G	A	63.09	.	AC=9;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+702G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818767	.	G	T	49.33	.	AC=8;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.16+709G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818778	.	G	A	360.66	.	AC=44;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-718G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818837	.	T	C	84.92	.	AC=2;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-659T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818880	.	G	C	47.08	.	AC=1;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-616G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	818945	.	C	G	36.54	.	AC=2;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-551C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819012	.	C	A	92.21	.	AC=1;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-484C>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819044	.	C	T	64.75	.	AC=1;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-452C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819065	.	C	T	172.12	.	AC=5;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-431C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819089	rs77434753	T	C	108.44	.	AC=19;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-407T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819106	rs76547028	C	T	208.38	.	AC=21;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-390C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819124	.	G	A	48.96	.	AC=7;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-372G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819135	.	A	G	52.28	.	AC=18;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-361A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819137	.	A	G	63.04	.	AC=20;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-359A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819186	.	T	C	266.22	.	AC=10;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-310T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819224	.	A	C	39.23	.	AC=11;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-272A>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819231	.	G	C	132.58	.	AC=2;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-265G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819265	.	A	G	11.63	.	AC=6;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-231A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819289	.	A	G	339.56	.	AC=32;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-207A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819311	.	T	C	104.07	.	AC=7;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-185T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819317	.	T	C	53.16	.	AC=3;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-179T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819398	rs61618401	G	T	785.46	.	AC=15;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-98G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819405	.	A	C	21.67	.	AC=2;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-91A>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819410	.	T	C	73.88	.	AC=13;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-86T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819464	rs113515212	G	T	716.22	.	AC=67;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-32G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819467	.	T	A	100.8	.	AC=2;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|1/2|c.17-29T>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819511	rs115843878	C	G	204.9	.	AC=17;ANN=G|stop_gained&splice_region_variant|HIGH|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/3|c.32C>G|p.Ser11*|32/57|32/57|11/18||WARNING_TRANSCRIPT_NO_START_CODON
1	819555	.	A	G	179.63	.	AC=26;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.34+42A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819578	.	T	C	141.32	.	AC=7;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.34+65T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819607	.	T	C	170.21	.	AC=22;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.34+94T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819617	.	G	A	302.01	.	AC=37;ANN=A|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.34+104G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819651	.	A	T	91.88	.	AC=3;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.34+138A>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819657	.	G	T	107.43	.	AC=2;ANN=T|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.34+144G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819869	rs34455115	T	C	1563.03	.	AC=35;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.35-92T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819876	.	T	G	19.71	.	AC=10;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.35-85T>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819887	.	T	C	18.84	.	AC=11;ANN=C|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.35-74T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819912	.	C	G	11.15	.	AC=6;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.35-49C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819917	rs6605057	A	G	78833.92	.	AC=1026;ANN=G|intron_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.35-44A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	819959	rs116545664	C	T	5717.68	.	AC=66;ANN=T|splice_acceptor_variant&intron_variant|HIGH|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|2/2|c.35-2C>T||||||WARNING_TRANSCRIPT_NO_START_CODON;LOF=(AL645608.2|ENSG00000269308|1|1.00)
1	819973	.	C	T	162.71	.	AC=4;ANN=T|missense_variant|MODERATE|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|3/3|c.47C>T|p.Pro16Leu|47/57|47/57|16/18||WARNING_TRANSCRIPT_NO_START_CODON
1	819974	.	G	C	198.1	.	AC=14;ANN=C|synonymous_variant|LOW|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding|3/3|c.48G>C|p.Pro16Pro|48/57|48/57|16/18||WARNING_TRANSCRIPT_NO_START_CODON
1	820013	.	C	T	352.43	.	AC=40;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||30|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820016	.	G	A	1386.74	.	AC=101;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||33|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820022	.	T	C	322.54	.	AC=40;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||39|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820036	.	G	A	690.87	.	AC=68;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||53|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820041	.	G	A	32.62	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||58|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820047	.	C	T	872.08	.	AC=77;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||64|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820052	rs111811604	T	C	1092.38	.	AC=91;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||69|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820181	.	C	T	51.97	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||198|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820215	.	C	A	100.13	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||232|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820246	rs72890739	T	C	832.6	.	AC=65;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||263|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820284	.	A	G	121.28	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||301|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820289	rs75698908	G	A	637.13	.	AC=64;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||306|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820319	.	T	C	571.16	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||336|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820336	.	C	A	1864.66	.	AC=119;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||353|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820345	.	T	A	48.19	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||362|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820355	.	C	A	1501.18	.	AC=98;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||372|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820362	.	C	T	1078.99	.	AC=79;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||379|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820453	.	C	T	66.9	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||470|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820498	.	G	A	60.66	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||515|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820546	rs115275545	G	A	149.65	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||563|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820583	.	G	C	389.66	.	AC=11;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||600|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820584	.	C	T	495.13	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||601|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820596	.	C	T	46.59	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||613|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820607	rs116735233	G	A	228.66	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||624|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820640	.	G	T	847.44	.	AC=65;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||657|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820656	.	A	T	2046.34	.	AC=108;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>T|||||673|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820662	.	G	C	1952.35	.	AC=111;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||679|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820674	.	C	T	131.69	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||691|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820701	rs75424183	A	G	1129.19	.	AC=55;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||718|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820732	rs114847682	A	T	1202.56	.	AC=79;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>T|||||749|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820748	.	T	A	237.22	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||765|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820766	.	C	T	134.15	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||783|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820800	rs115452651	G	A	288.23	.	AC=31;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||817|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820806	rs116027390	T	C	219.17	.	AC=25;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||823|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820820	rs116247281	T	C	689.14	.	AC=52;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||837|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820825	rs116917267	C	T	79.33	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||842|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820833	rs114091531	G	A	1032.27	.	AC=71;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||850|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820844	.	T	C	203.03	.	AC=21;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||861|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820848	rs114500317	C	G	1255.41	.	AC=86;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||865|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820870	.	C	A	502.54	.	AC=45;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||887|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820895	.	C	G	3174.61	.	AC=140;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||912|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820919	rs115088975	C	G	122.92	.	AC=10;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||936|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820944	rs77972638	G	T	14329.39	.	AC=241;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||961|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820957	.	C	T	11379.39	.	AC=182;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||974|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820968	.	T	G	2489.68	.	AC=118;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>G|||||985|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	820979	rs72890746	C	G	50857.22	.	AC=462;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||996|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821013	.	C	A	14630.15	.	AC=163;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||1030|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821019	.	G	A	5.39	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1036|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821030	.	G	T	8.99	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||1047|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821033	.	C	T	849.24	.	AC=82;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||1050|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821034	rs111841925	G	A	1700.42	.	AC=125;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1051|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821038	rs79196054	C	T	32095.44	.	AC=409;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||1055|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821051	.	T	A	21742.48	.	AC=317;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||1068|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821060	rs75377789	A	T	19565.18	.	AC=296;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>T|||||1077|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821069	rs75104829	A	T	310.07	.	AC=27;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>T|||||1086|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821084	.	C	G	1024.83	.	AC=69;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||1101|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821101	rs76890555	A	G	224.26	.	AC=27;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||1118|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821111	rs61768253	T	C	10543.79	.	AC=207;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1128|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821117	.	A	T	2235.63	.	AC=128;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>T|||||1134|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821135	rs79788438	G	T	13.28	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||1152|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821143	rs61768254	G	T	14293.5	.	AC=250;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||1160|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821169	.	A	T	11461.72	.	AC=181;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>T|||||1186|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821190	.	A	T	9410.66	.	AC=162;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>T|||||1207|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821206	.	T	A	278.93	.	AC=34;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||1223|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821215	.	A	G	215.76	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||1232|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821230	.	T	C	289.78	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1247|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821249	.	G	A	26.18	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1266|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821265	.	T	C	2307.64	.	AC=101;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1282|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821275	.	G	A	1306.4	.	AC=73;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1292|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821276	.	T	C	204.31	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1293|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821278	rs111690121	G	C	2287.47	.	AC=151;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||1295|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821342	rs114214425	T	C	8965.15	.	AC=201;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1359|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821401	rs113815941	C	A	2227.73	.	AC=140;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||1418|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821422	rs114932032	G	A	11636.71	.	AC=254;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1439|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821429	rs114798380	G	C	757.08	.	AC=61;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||1446|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821434	.	A	G	388.39	.	AC=32;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||1451|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821451	.	A	G	41.05	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||1468|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821452	.	G	A	7275.48	.	AC=164;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1469|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821477	.	A	G	381.41	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||1494|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821512	rs111906909	G	A	1905.28	.	AC=136;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1529|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821677	rs114898421	C	T	268.16	.	AC=38;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||1694|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821700	rs116625378	T	C	615.14	.	AC=76;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1717|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821710	.	C	T	355.44	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||1727|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821725	.	C	T	136.41	.	AC=23;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||1742|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821729	.	A	C	3049.43	.	AC=159;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||1746|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821735	.	G	C	302.68	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||1752|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821739	.	G	A	296.98	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1756|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821760	.	G	T	116.03	.	AC=15;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||1777|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821765	.	C	T	555.3	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||1782|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821772	rs75547860	G	C	26434.78	.	AC=388;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||1789|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821787	rs76868378	C	T	29272.35	.	AC=404;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||1804|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821793	rs75898324	G	A	20038.75	.	AC=328;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||1810|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821840	.	A	C	127.56	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||1857|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821887	rs6677354	A	G	53571.29	.	AC=964;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||1904|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821905	rs116213808	G	T	149.86	.	AC=28;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||1922|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821926	rs35660652	C	G	5649.6	.	AC=93;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||1943|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821948	rs6671445	T	C	49590.31	.	AC=936;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1965|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821957	.	T	C	643.18	.	AC=58;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1974|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	821979	rs113317940	T	C	529.08	.	AC=55;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||1996|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822036	rs79709273	T	C	1873.3	.	AC=134;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||2053|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822070	.	G	A	843.75	.	AC=83;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||2087|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822097	rs79290188	C	A	9221.39	.	AC=193;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||2114|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822117	.	C	T	1733.12	.	AC=116;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2134|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822129	rs74327865	C	T	476.11	.	AC=60;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2146|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822131	rs77770917	A	G	2605.39	.	AC=173;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||2148|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822132	.	C	A	1975.02	.	AC=100;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||2149|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822180	rs72890753	C	T	8517.58	.	AC=152;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2197|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822181	.	G	A	137.23	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||2198|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822232	rs79952038	T	A	30.47	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||2249|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822250	rs75422321	A	G	410.41	.	AC=38;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||2267|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822266	rs77818596	C	T	132.98	.	AC=14;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2283|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822268	rs76767755	G	A	28.73	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||2285|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822272	rs116301497	G	A	509.03	.	AC=17;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||2289|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822334	.	C	T	17.79	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2351|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822381	rs116091741	C	T	1011.79	.	AC=33;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2398|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822518	.	C	T	72.89	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2535|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822521	.	C	T	125.65	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2538|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822522	.	A	G	127.75	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||2539|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822548	rs79906639	C	A	8313.27	.	AC=189;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||2565|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822553	.	C	T	357.73	.	AC=43;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2570|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822560	.	C	T	9209.39	.	AC=211;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2577|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822599	.	T	C	12.85	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||2616|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822607	rs74223852	G	A	1727.13	.	AC=108;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||2624|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822613	rs74223853	G	A	961.88	.	AC=76;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||2630|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822775	.	G	A	288.53	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||2792|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822803	rs77349731	A	G	221.79	.	AC=33;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||2820|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822816	.	T	C	38.45	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||2833|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822833	.	C	A	67.24	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||2850|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822835	.	C	T	53.85	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2852|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822941	.	T	C	137.12	.	AC=23;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||2958|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822967	.	A	C	2063.95	.	AC=125;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||2984|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822968	.	C	G	686.52	.	AC=59;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||2985|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822975	.	T	A	933.41	.	AC=74;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||2992|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822977	.	C	T	121.23	.	AC=20;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||2994|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	822979	.	T	A	287.25	.	AC=41;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||2996|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823037	rs74045345	G	A	413.05	.	AC=34;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3054|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823056	.	A	G	17.8	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||3073|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823064	.	C	T	632.09	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3081|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823086	.	G	C	33.86	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||3103|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823088	rs77340708	G	T	379.51	.	AC=30;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||3105|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823090	.	A	G	999.85	.	AC=24;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||3107|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823112	rs79164353	C	T	676.07	.	AC=51;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3129|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823118	rs72468203	C	A	487.64	.	AC=44;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||3135|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823167	.	A	C	2398.3	.	AC=82;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||3184|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823178	rs72890755	T	G	13103.96	.	AC=161;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>G|||||3195|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823192	rs116183703	T	G	8538.36	.	AC=125;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>G|||||3209|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823210	.	C	G	1229.06	.	AC=97;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||3227|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823214	.	G	A	588.68	.	AC=55;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3231|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823215	.	C	G,T	14164.64	.	AC=155;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||3232|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3232|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823217	.	A	G	623.23	.	AC=71;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||3234|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823223	.	C	G	2029.97	.	AC=84;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||3240|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823249	.	C	T	218.04	.	AC=30;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3266|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823257	rs74045347	G	A	8130.31	.	AC=115;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3274|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823260	rs80160316	G	T	10898.51	.	AC=154;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||3277|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823270	rs116577813	G	C	1218.01	.	AC=63;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||3287|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823272	rs114352034	A	G	8815.52	.	AC=141;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||3289|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823293	.	T	A	238.33	.	AC=33;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||3310|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823294	.	G	C	330.14	.	AC=45;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||3311|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823323	.	G	C	788.04	.	AC=77;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||3340|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823324	rs76998975	A	G	1043.24	.	AC=96;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||3341|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823326	.	C	G	634.18	.	AC=66;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>G|||||3343|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823345	rs77216701	C	A	8311.42	.	AC=174;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||3362|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823346	.	A	G	28.3	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||3363|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823359	.	G	A	51.49	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3376|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823377	rs77615876	C	T	17155.25	.	AC=273;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3394|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823388	.	C	T	1391.9	.	AC=95;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3405|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823408	rs72890757	T	C	17883.86	.	AC=283;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||3425|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823415	.	T	C	301.81	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||3432|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823426	.	G	T	768.57	.	AC=60;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||3443|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823453	rs75795493	C	T	17905.21	.	AC=306;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3470|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823460	.	A	C	13176.56	.	AC=193;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||3477|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823504	rs78498238	T	G	67884.77	.	AC=388;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>G|||||3521|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823505	rs13302980	T	C	70912.82	.	AC=585;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||3522|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823522	.	C	T	162.76	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3539|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823534	.	C	T	115.19	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||3551|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823538	.	G	T	21331.96	.	AC=290;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||3555|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823543	.	T	G	716.03	.	AC=19;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>G|||||3560|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823561	.	A	G	9119.29	.	AC=169;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||3578|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823580	rs76885146	T	G	733.69	.	AC=57;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>G|||||3597|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823651	rs61768255	T	A	3206.64	.	AC=183;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||3668|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823704	.	G	T	6.1	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||3721|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823784	.	T	A	154.54	.	AC=32;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||3801|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823790	.	G	A	822.79	.	AC=25;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3807|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823855	rs115689141	G	T	21.92	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||3872|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823897	.	G	A	308.54	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3914|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823948	.	G	A	829.75	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3965|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823949	.	G	A	12.16	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||3966|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	823963	.	A	C	43.72	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||3980|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824094	rs72890760	G	A	1534.83	.	AC=109;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4111|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824107	.	G	A	16.51	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4124|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824142	rs77996004	C	T	105.23	.	AC=22;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4159|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824201	rs76258366	G	C	31.73	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||4218|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824246	.	T	G	48.99	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>G|||||4263|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824273	.	T	A	65.99	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>A|||||4290|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824352	.	G	A	18.08	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4369|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824357	rs80134645	C	T	112.32	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4374|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824398	rs7538305	A	C	13915.78	.	AC=170;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||4415|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824411	rs78293023	G	A	330.52	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4428|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824471	.	T	C	46.02	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||4488|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824518	rs112485230	G	T	1614.83	.	AC=21;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||4535|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824528	.	C	A	43.39	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||4545|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824534	.	T	C	1656.97	.	AC=26;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||4551|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824593	rs75926297	C	A	342.43	.	AC=36;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||4610|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824606	.	C	T	129.64	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4623|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824607	rs72631884	G	C	471.55	.	AC=49;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||4624|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824613	.	C	T	398.44	.	AC=48;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4630|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824620	.	C	T	218.18	.	AC=19;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4637|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824632	rs75185704	T	C	636.43	.	AC=69;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||4649|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824641	.	C	T	553.63	.	AC=57;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4658|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824666	.	C	A	192.29	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||4683|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824677	.	A	G	2759.48	.	AC=115;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||4694|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824691	rs75026264	G	A	8422.35	.	AC=142;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4708|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824694	rs78484413	G	A	33.97	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4711|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824709	rs75988466	A	C	60.67	.	AC=17;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||4726|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824743	.	A	C	233.28	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>C|||||4760|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824764	rs72890766	C	A	1958.24	.	AC=110;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||4781|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824785	.	G	A	135.69	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4802|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824812	rs78879880	G	A	621.77	.	AC=44;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4829|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824838	rs79872378	C	A	702.01	.	AC=52;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||4855|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824845	rs74714520	G	T	792.63	.	AC=52;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>T|||||4862|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824850	rs78909171	T	C	245.71	.	AC=20;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||4867|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824874	rs80134079	C	T	948.59	.	AC=69;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4891|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824876	.	C	A	106.05	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>A|||||4893|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824903	.	C	T	59.15	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4920|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824904	rs72890767	G	C	8133.75	.	AC=146;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||4921|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824912	.	C	T	34.6	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4929|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824924	rs74632065	A	G	2153.05	.	AC=107;ANN=G|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57A>G|||||4941|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824931	rs78195045	G	C	13411.85	.	AC=240;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>C|||||4948|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824941	rs111740268	C	T	3049.48	.	AC=152;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4958|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824948	rs79544309	C	T	16820.07	.	AC=254;ANN=T|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57C>T|||||4965|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824951	rs113553559	T	C	34.42	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57T>C|||||4968|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	824970	rs74213324	G	A	37698.36	.	AC=436;ANN=A|downstream_gene_variant|MODIFIER|AL645608.2|ENSG00000269308|transcript|ENST00000594233|protein_coding||c.*57G>A|||||4987|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825016	rs76909640	A	T	40574.29	.	AC=434;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825037	rs75962981	C	T	31785.76	.	AC=405;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825053	.	A	G	14.42	.	AC=8;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825055	.	G	A	157.51	.	AC=16;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825067	.	C	T	331.68	.	AC=3;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825069	rs4475692	G	C	58577.01	.	AC=473;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825076	rs76328009	G	A	15759.23	.	AC=239;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825103	.	G	A	13254.76	.	AC=184;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825104	rs76841076	G	A	15570.18	.	AC=174;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825112	rs113285660	C	A	135.94	.	AC=18;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825125	rs58233623	C	A	1266.78	.	AC=20;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825144	rs76189004	C	A	10681.08	.	AC=141;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825193	rs61768256	C	T	26805.76	.	AC=379;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825197	rs7417801	G	A	1461.51	.	AC=84;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825207	rs61768257	T	C	33544.76	.	AC=416;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825225	.	C	T	493.0	.	AC=8;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825240	.	C	T	12217.13	.	AC=228;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825250	rs61768258	A	G	10729.16	.	AC=222;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825252	.	G	T	8623.73	.	AC=178;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825257	.	G	A	171.33	.	AC=4;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825266	rs72890768	G	A	124.6	.	AC=16;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825292	.	G	A	351.97	.	AC=37;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825307	rs77548197	C	T	308.6	.	AC=40;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825323	rs77714068	G	A	170.86	.	AC=24;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825410	rs13303179	G	A	38765.23	.	AC=594;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825449	rs78507775	G	A	1130.11	.	AC=82;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825464	.	G	A	125.96	.	AC=4;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825465	rs76685262	G	A	340.61	.	AC=40;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825497	.	C	T	385.16	.	AC=9;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825500	.	G	A	840.26	.	AC=60;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825508	rs79964634	T	A	1765.43	.	AC=92;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825518	.	G	A	981.39	.	AC=68;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825554	rs4970337	A	G	44894.37	.	AC=931;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825564	.	C	T	478.76	.	AC=20;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825651	rs76337951	T	C	228.13	.	AC=40;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825662	.	C	T	55.26	.	AC=4;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825683	.	G	A	180.54	.	AC=39;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825690	rs76393866	C	T	435.15	.	AC=45;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825694	.	T	C	1337.05	.	AC=114;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825697	.	A	G	105.99	.	AC=25;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825701	rs76510008	G	T	1730.67	.	AC=116;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825733	.	C	T	432.3	.	AC=52;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825762	.	G	A	1279.22	.	AC=27;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825783	.	T	A	669.59	.	AC=54;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825794	rs113940038	T	C	861.66	.	AC=70;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825851	rs4549984	T	A	31338.07	.	AC=357;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825877	.	G	T	85904.04	.	AC=518;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825896	.	A	G	24158.12	.	AC=200;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825914	.	C	T	20210.98	.	AC=142;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825917	rs78637499	A	G	65949.58	.	AC=476;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825932	.	T	C	37169.53	.	AC=269;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825982	rs77036575	C	G	32138.81	.	AC=366;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	825994	rs75840942	T	A	14426.11	.	AC=210;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826026	rs78938671	T	C	1073.19	.	AC=81;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826047	.	T	C	1365.36	.	AC=101;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826048	.	G	T	1552.41	.	AC=85;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826073	rs77524722	T	G	2819.14	.	AC=87;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826086	rs75772460	T	C	36904.57	.	AC=416;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826105	.	C	A	119.0	.	AC=11;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826116	rs78508727	A	G	20398.95	.	AC=256;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826123	rs112199093	A	G	42420.64	.	AC=467;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826134	.	G	A	117.37	.	AC=2;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826135	.	C	T	623.86	.	AC=8;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826138	.	G	A	10098.73	.	AC=122;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826155	.	G	C	582.92	.	AC=63;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826162	.	C	G	26.83	.	AC=8;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826178	.	C	A	568.56	.	AC=19;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826189	.	T	G	52.66	.	AC=2;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826194	.	A	G	1345.43	.	AC=70;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826205	.	G	A	830.55	.	AC=24;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826229	.	A	G	1499.94	.	AC=82;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826260	rs111513281	A	T	2606.33	.	AC=143;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826265	rs112929945	A	G	16962.18	.	AC=276;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826278	.	G	T	102.41	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826293	.	C	T	1198.64	.	AC=78;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826298	rs113035503	A	G	22034.01	.	AC=230;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826510	rs114967681	T	A	971.94	.	AC=19;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826849	.	G	A	67.79	.	AC=8;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826981	.	C	G	13.04	.	AC=5;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	826989	.	G	C	93.53	.	AC=16;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827002	.	C	T	229.68	.	AC=25;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827107	.	A	G	194.47	.	AC=15;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827129	.	G	C	64.24	.	AC=12;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827139	.	G	T	216.46	.	AC=38;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827141	.	T	C	134.21	.	AC=4;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827156	.	A	G	30.49	.	AC=1;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827165	rs113737624	A	T	1746.13	.	AC=122;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827184	rs74195525	T	A	7940.11	.	AC=180;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827200	rs72631886	G	T	1868.36	.	AC=118;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827205	.	G	A	151.07	.	AC=29;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827214	.	G	T	438.12	.	AC=52;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827253	rs34232102	C	A	590.25	.	AC=26;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827257	.	T	C	314.48	.	AC=14;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827261	rs6703274	G	A	479.53	.	AC=26;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827267	rs2879698	C	T	31714.8	.	AC=772;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827277	rs4246498	T	C	27147.91	.	AC=703;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827323	rs4970386	C	T	28860.89	.	AC=724;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827331	rs111910870	T	C	327.14	.	AC=13;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827610	.	C	T	547.44	.	AC=10;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827650	rs61769661	T	C	26.21	.	AC=3;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827659	rs61769662	A	G	147.95	.	AC=23;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	827872	.	G	T	345.5	.	AC=5;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828009	.	C	T	116.6	.	AC=20;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828010	.	G	A	89.53	.	AC=17;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828058	.	C	T	93.2	.	AC=3;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828113	rs79018226	A	T	1675.83	.	AC=96;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828126	rs77607126	A	T	1097.45	.	AC=81;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828166	rs13303117	A	G	20997.15	.	AC=295;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828175	.	G	A	1080.66	.	AC=19;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828468	.	G	A	741.69	.	AC=7;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828539	.	A	T	270.97	.	AC=16;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828669	.	A	T	996.23	.	AC=25;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828740	rs28541977	A	G	950.45	.	AC=17;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	828883	rs55745762	G	A	7596.57	.	AC=121;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829018	.	G	A	100.53	.	AC=5;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829106	.	A	G	434.34	.	AC=18;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829333	rs9778019	G	A	39267.41	.	AC=849;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829437	.	G	A	40.64	.	AC=2;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829441	.	T	C	54.4	.	AC=2;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829450	.	G	A	222.7	.	AC=6;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829471	.	T	C	821.58	.	AC=21;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829637	rs4437820	C	T	51481.68	.	AC=930;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829667	rs7542092	C	A	1360.79	.	AC=28;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829733	.	G	A	161.0	.	AC=16;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829743	.	A	G	27.75	.	AC=3;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829861	.	G	A	25.77	.	AC=3;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829915	.	G	A	308.65	.	AC=35;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829972	rs80139885	A	C	371.99	.	AC=34;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	829976	.	T	A	12.28	.	AC=6;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830021	.	C	A	50.94	.	AC=8;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830123	rs61769664	G	A	849.93	.	AC=43;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830151	rs76901209	A	G	549.35	.	AC=42;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830168	.	A	G	70.66	.	AC=16;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830181	rs28444699	A	G	50424.24	.	AC=685;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830186	.	A	G	43.09	.	AC=1;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830218	rs72468205	A	C	1148.52	.	AC=72;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830324	rs77038580	G	A	35.68	.	AC=7;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830352	.	T	C	77.22	.	AC=1;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830359	.	C	T	837.38	.	AC=18;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830403	.	T	C	161.38	.	AC=10;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830455	rs7535252	T	C	1319.73	.	AC=41;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830554	.	C	T	45.61	.	AC=2;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830579	.	A	C	136.05	.	AC=6;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830626	.	C	T	21.65	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830684	.	G	A	382.51	.	AC=52;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830692	.	G	A	530.99	.	AC=57;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830731	.	T	C	11.3	.	AC=2;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830739	.	C	T	17.37	.	AC=2;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830791	.	C	T	331.98	.	AC=9;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830807	rs6422669	G	C	45846.42	.	AC=833;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830837	.	A	G	10.99	.	AC=7;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830842	.	G	A	118.05	.	AC=16;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	830881	rs112567058	G	A	300.7	.	AC=9;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831020	.	A	T	413.21	.	AC=42;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831027	rs116338301	C	T	2947.44	.	AC=84;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831048	.	A	G	237.3	.	AC=33;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831056	.	A	C	252.34	.	AC=30;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831075	.	G	C	82.74	.	AC=14;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831105	.	T	C	491.68	.	AC=10;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831137	.	T	C	24.01	.	AC=1;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831142	.	G	A	61.15	.	AC=15;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831164	.	G	T	22.21	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831168	rs115701597	G	A	258.62	.	AC=6;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831213	.	G	A	116.86	.	AC=17;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831218	.	G	A	134.86	.	AC=15;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831276	rs75559809	C	T	74.6	.	AC=11;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831297	.	A	C	648.15	.	AC=60;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831320	.	T	G	853.14	.	AC=21;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831370	.	C	T	118.9	.	AC=22;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831378	.	G	A	469.88	.	AC=41;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831389	.	C	A	342.57	.	AC=43;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831465	.	G	T	45.93	.	AC=5;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831489	rs4970385	C	T	48313.3	.	AC=620;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831572	.	G	T	17.95	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831587	.	A	G	14.21	.	AC=1;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831651	rs28864374	A	G	97.01	.	AC=19;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831841	.	A	G	155.94	.	AC=24;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831909	rs9697642	C	T	41056.3	.	AC=702;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	831938	.	G	T	74.53	.	AC=17;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832006	rs114599120	C	A	268.85	.	AC=5;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832060	rs9697378	G	A	41947.5	.	AC=685;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832066	rs9697380	G	C	36615.92	.	AC=620;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832075	.	C	A	212.49	.	AC=28;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832107	.	C	T	446.37	.	AC=47;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832112	rs9697725	T	C	33065.97	.	AC=578;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832126	.	C	T	1159.36	.	AC=98;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832152	.	C	A	650.09	.	AC=74;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832154	.	A	G	598.28	.	AC=71;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832160	.	T	G	535.05	.	AC=68;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832178	rs13302934	A	G	35402.36	.	AC=584;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832212	.	G	A	264.15	.	AC=29;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832257	.	C	T	57.53	.	AC=9;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832266	.	G	A	12.17	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832273	.	G	A	4.33	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832286	.	A	G	54.67	.	AC=5;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832318	rs4500250	C	A	44562.04	.	AC=693;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832359	rs9697294	C	T	7855.5	.	AC=114;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832360	.	G	A	647.23	.	AC=20;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832398	rs4553118	T	C	49801.32	.	AC=747;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832502	.	G	A	18.67	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832554	.	G	A	10.11	.	AC=6;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832596	.	G	T	49.12	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832742	.	C	T	140.73	.	AC=2;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832756	rs28833197	T	G	12388.0	.	AC=253;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832799	.	G	A	100.58	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832809	.	T	G	487.37	.	AC=16;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832824	.	G	A	48.8	.	AC=2;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832837	.	G	A	53.75	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832843	.	C	T	135.04	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832918	rs28765502	T	C	27999.99	.	AC=333;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	832954	.	T	G	12.76	.	AC=1;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833162	.	C	A	27.38	.	AC=7;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833187	.	A	G	96.52	.	AC=6;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833223	rs13303211	C	T	18179.83	.	AC=297;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833280	.	A	C	672.65	.	AC=15;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833302	rs28752186	C	T	19326.08	.	AC=286;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833333	.	A	G	94.73	.	AC=2;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833343	.	G	A	20.75	.	AC=2;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833350	rs114647479	C	T	250.55	.	AC=8;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833418	.	G	A	179.43	.	AC=2;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833421	rs115244455	T	C	2145.06	.	AC=48;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833616	.	C	T	600.26	.	AC=21;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833641	rs28594623	T	C	11532.49	.	AC=221;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833659	rs28522102	T	A	11967.19	.	AC=209;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833663	rs28416910	A	G	11810.52	.	AC=210;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833754	.	G	A	4.19	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833824	rs28484835	T	C	21368.68	.	AC=291;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833916	.	C	T	55.31	.	AC=3;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833927	rs28593608	T	C	9429.63	.	AC=179;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	833977	.	G	A	170.18	.	AC=2;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834056	rs28482280	A	C	11106.94	.	AC=216;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834088	.	T	C	103.37	.	AC=1;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834101	.	T	C	256.72	.	AC=7;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834138	.	A	G	67.19	.	AC=1;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834198	rs28385272	T	C	13648.52	.	AC=216;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834204	.	G	A	84.76	.	AC=4;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834240	.	G	A	153.5	.	AC=3;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834263	.	C	T	431.28	.	AC=19;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834282	.	C	T	14.52	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834360	rs118163204	C	T	552.8	.	AC=17;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834492	.	C	T	122.85	.	AC=6;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834614	.	G	C	594.61	.	AC=26;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834628	.	G	A	25.11	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834641	.	C	T	577.96	.	AC=14;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834700	.	G	T	29.17	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834747	.	C	T	110.67	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834753	rs4411088	G	C	2398.4	.	AC=74;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834820	.	G	A	199.12	.	AC=4;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834830	rs116452738	G	A	390.41	.	AC=11;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834832	rs4411087	G	C	15239.74	.	AC=283;ANN=C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834918	.	C	T	60.92	.	AC=1;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834928	rs4422949	A	G	9638.23	.	AC=219;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834956	rs7518581	G	A	9999.68	.	AC=157;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834991	rs116090519	C	T	2522.89	.	AC=51;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	834999	rs28570054	G	A	16243.62	.	AC=231;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835008	rs115466430	C	T	122.85	.	AC=3;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835009	rs112677054	G	A	148.14	.	AC=5;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835041	rs115989268	G	A	82.15	.	AC=6;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835092	rs72631887	T	G	503.14	.	AC=14;ANN=G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835132	rs75104542	C	T	972.61	.	AC=17;ANN=T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835133	rs57127855	G	A	241.57	.	AC=4;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835204	.	G	A	30.43	.	AC=1;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835207	.	G	A	114.89	.	AC=2;ANN=A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835236	rs28712421	G	A	1150.35	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||4978|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835242	rs77180534	C	T	1706.77	.	AC=45;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||4972|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835491	rs112672359	C	T	1346.8	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||4723|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835499	rs4422948	A	G	18028.7	.	AC=281;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||4715|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835613	.	C	T	409.89	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||4601|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835742	rs114181266	A	G	558.89	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||4472|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835745	.	G	A	77.32	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||4469|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	835840	rs28514991	T	A	1541.94	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>A|||||4374|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836141	.	T	C	62.64	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||4073|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836265	.	G	A	9.53	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||3949|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836430	.	C	T	171.5	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||3784|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836529	rs28731045	C	G	12317.68	.	AC=206;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>G|||||3685|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836684	rs74460547	G	A	1219.55	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||3530|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836755	.	G	A	20.06	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||3459|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836791	rs117994554	A	G	322.0	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||3423|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836826	.	T	G	25.62	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>G|||||3388|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836896	rs28705752	T	C	22629.75	.	AC=335;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||3318|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836924	rs72890788	G	A	17356.35	.	AC=223;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||3290|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836938	.	C	T	368.34	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||3276|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	836965	.	T	C	157.02	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||3249|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837014	rs116738141	G	A	650.6	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||3200|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837096	.	C	T	635.11	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||3118|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837109	rs77476995	C	T	656.01	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||3105|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837140	.	G	A	269.43	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||3074|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837182	.	C	T	49.87	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||3032|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837192	rs57494724	A	G	9912.1	.	AC=227;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||3022|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837214	rs72631888	G	C	164.55	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>C|||||3000|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837296	rs113770197	C	T	71.43	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||2918|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837297	.	A	T	44.43	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>T|||||2917|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837302	.	C	T	142.86	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||2912|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837303	rs115809836	G	A	1896.29	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||2911|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837417	rs77916225	C	T	7586.76	.	AC=75;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||2797|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837424	rs114580054	T	C	487.55	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||2790|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837428	rs111363967	G	A	1738.11	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||2786|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837461	.	G	A	9.29	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||2753|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837485	.	G	A	24.86	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||2729|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837626	rs116024936	G	T	314.51	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>T|||||2588|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837657	.	G	C	234.33	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>C|||||2557|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837753	.	G	A	7.3	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||2461|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837786	.	C	A	274.57	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>A|||||2428|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837917	rs113461348	A	G	457.62	.	AC=12;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||2297|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	837928	.	C	T	42.39	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||2286|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838009	.	A	G	47.03	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||2205|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838035	rs111757215	T	C	262.62	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||2179|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838096	.	G	C	34.21	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>C|||||2118|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838098	.	G	C	33.24	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>C|||||2116|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838170	.	C	T	180.52	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||2044|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838219	.	G	A	94.51	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||1995|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838260	rs115305660	C	T	588.02	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||1954|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838387	rs4970384	T	C	6313.09	.	AC=156;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||1827|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838394	.	G	A	11.36	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||1820|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838555	rs4970383	C	A	14733.19	.	AC=265;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>A|||||1659|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838646	rs113041346	G	A	865.81	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||1568|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838665	rs28678693	T	C	2204.52	.	AC=54;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||1549|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838677	rs113946350	C	T	11.95	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||1537|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838695	rs79501908	G	A	286.63	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||1519|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838729	rs112565450	T	C	362.55	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||1485|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838732	rs28477624	G	A	2069.82	.	AC=50;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||1482|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838778	rs78387041	T	C	496.88	.	AC=15;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||1436|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838784	rs115165672	A	G	170.27	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||1430|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838830	rs77144359	G	T	2466.17	.	AC=42;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>T|||||1384|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838843	.	A	G	37.17	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||1371|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838890	rs28437697	A	G	2289.65	.	AC=55;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||1324|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838900	rs76080294	A	G	380.38	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||1314|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838916	rs28539852	A	T	2103.95	.	AC=49;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>T|||||1298|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838931	rs7523690	A	C	13092.54	.	AC=239;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>C|||||1283|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	838961	.	T	C	47.58	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||1253|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839087	rs115219522	T	C	568.2	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||1127|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839103	rs28562941	A	G	13048.94	.	AC=276;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||1111|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839178	.	G	A	38.84	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||1036|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839186	.	G	A	34.51	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||1028|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839312	.	C	T	30.09	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||902|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839461	rs78238606	T	C	661.65	.	AC=33;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||753|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839495	rs113341842	G	T	440.3	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>T|||||719|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839506	.	G	A	79.29	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||708|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839528	rs115928763	A	G	358.87	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1A>G|||||686|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839529	rs114543760	T	G	346.12	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>G|||||685|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839538	.	G	A	55.46	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||676|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839682	.	G	A	86.54	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>A|||||532|,A|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839859	.	G	T	74.74	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>T|||||355|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:839766_839915|||||||||,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839873	.	C	T	1325.61	.	AC=69;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||341|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:839766_839915|||||||||,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839878	.	G	T	24.62	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>T|||||336|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:839766_839915|||||||||,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839911	rs76652930	C	T	345.65	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||303|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:839766_839915|||||||||,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839916	.	G	T	75.59	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>T|||||298|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839919	.	T	G	82.5	.	AC=13;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>G|||||295|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839933	.	C	T	341.93	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||281|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839955	.	T	C	295.83	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||259|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839960	.	T	G	92.16	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>G|||||254|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839971	.	T	C	167.56	.	AC=18;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>C|||||243|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	839976	.	G	T	70.41	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>T|||||238|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	840009	.	C	T	85.37	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1C>T|||||205|,T|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	840036	.	T	G	47.89	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1T>G|||||178|,G|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	840054	.	G	C	78.47	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.-1G>C|||||160|,C|intergenic_region|MODIFIER|AL645608.2-RP11-54O7.16|ENSG00000269308-ENSG00000272438|intergenic_region|ENSG00000269308-ENSG00000272438|||||||||
1	840327	rs28625089	G	A	1016.61	.	AC=50;ANN=A|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/2|n.114G>A||||||
1	840412	.	A	G	45.87	.	AC=10;ANN=G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+75A>G||||||
1	840591	.	G	C	30.72	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+254G>C||||||
1	840711	rs72902533	G	T	141.16	.	AC=4;ANN=T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+374G>T||||||
1	840753	rs4970382	T	C	8056.63	.	AC=248;ANN=C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+416T>C||||||
1	841003	.	G	A	222.69	.	AC=3;ANN=A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+666G>A||||||
1	841004	.	C	G	28.47	.	AC=1;ANN=G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+667C>G||||||
1	841056	rs79276155	C	T	1376.11	.	AC=37;ANN=T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+719C>T||||||
1	841085	rs1574243	C	G	15790.19	.	AC=280;ANN=G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+748C>G||||||
1	841211	.	C	T	59.17	.	AC=1;ANN=T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+874C>T||||||
1	841529	.	G	C	34.7	.	AC=1;ANN=C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1192G>C||||||
1	841591	rs114464092	C	T	692.99	.	AC=24;ANN=T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1254C>T||||||
1	841654	.	G	A	47.42	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1317G>A||||||
1	841803	.	C	A	8.3	.	AC=1;ANN=A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1466C>A||||||
1	842013	rs7419119	T	G	9164.59	.	AC=200;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||4802|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1676T>G||||||
1	842143	.	C	T	46.78	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||4672|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1806C>T||||||
1	842250	.	A	G	381.33	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||4565|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:842246_842395|||||||||,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1913A>G||||||
1	842329	rs117219799	G	A	493.02	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||4486|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:842246_842395|||||||||,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+1992G>A||||||
1	842362	rs28540380	C	T	11554.81	.	AC=205;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||4453|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:842246_842395|||||||||,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2025C>T||||||
1	842461	rs116616688	G	A	25.3	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||4354|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2124G>A||||||
1	842473	rs80143686	C	T	206.33	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||4342|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2136C>T||||||
1	842501	.	G	A	27.14	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||4314|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2164G>A||||||
1	842513	.	C	G	119.88	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>G|||||4302|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2176C>G||||||
1	842537	rs59131686	C	T	710.58	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||4278|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2200C>T||||||
1	842594	rs117615060	G	A	814.33	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||4221|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2257G>A||||||
1	842652	rs58666659	C	T	157.25	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||4163|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2315C>T||||||
1	842685	.	T	C	142.21	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>C|||||4130|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2348T>C||||||
1	842690	rs71628922	G	A	80.14	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||4125|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2353G>A||||||
1	842746	.	C	G	122.34	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>G|||||4069|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2409C>G||||||
1	842825	rs7519340	A	G	49143.25	.	AC=923;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||3990|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2488A>G||||||
1	842897	.	A	T	49.04	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>T|||||3918|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2560A>T||||||
1	843182	rs114064018	C	T	295.67	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||3633|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2845C>T||||||
1	843302	.	C	T	61.61	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||3513|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2965C>T||||||
1	843312	.	C	T	39.08	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||3503|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2975C>T||||||
1	843315	.	G	A	7.31	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||3500|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+2978G>A||||||
1	843340	rs11516184	C	T	387.77	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||3475|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3003C>T||||||
1	843366	rs28440803	C	T	2673.34	.	AC=79;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||3449|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3029C>T||||||
1	843373	rs113202274	C	T	196.32	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||3442|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3036C>T||||||
1	843405	rs11516185	A	G	19654.81	.	AC=389;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||3410|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3068A>G||||||
1	843756	.	A	G	7.24	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||3059|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3419A>G||||||
1	843923	.	A	T	87.33	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>T|||||2892|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3586A>T||||||
1	844138	rs113978591	A	G	291.61	.	AC=23;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||2677|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3801A>G||||||
1	844249	.	G	A	38.86	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||2566|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3912G>A||||||
1	844300	rs61769713	C	G	11922.85	.	AC=468;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>G|||||2515|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3963C>G||||||
1	844301	.	G	A	17.75	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||2514|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3964G>A||||||
1	844324	rs61769714	G	A	7850.52	.	AC=322;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||2491|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+3987G>A||||||
1	844341	.	T	G	31.41	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||2474|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4004T>G||||||
1	844343	rs61769715	A	G	1721.23	.	AC=113;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||2472|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4006A>G||||||
1	844382	.	G	C	49.2	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>C|||||2433|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4045G>C||||||
1	844386	.	G	T	197.44	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||2429|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4049G>T||||||
1	844414	rs61769716	G	T	339.66	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||2401|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4077G>T||||||
1	844431	.	G	T	88.99	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||2384|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4094G>T||||||
1	844433	.	G	A	12.64	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||2382|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4096G>A||||||
1	844490	.	C	G	91.48	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>G|||||2325|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4153C>G||||||
1	844504	.	T	C	61.83	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>C|||||2311|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4167T>C||||||
1	844595	rs112414566	G	T	100.58	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||2220|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||4956|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4258G>T||||||
1	844694	.	C	A	15.53	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>A|||||2121|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>A|||||4857|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4357C>A||||||
1	844697	rs71509442	T	G	113.5	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||2118|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>G|||||4854|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4360T>G||||||
1	844725	rs112625935	G	T	32.13	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||2090|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||4826|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4388G>T||||||
1	844787	.	T	G	58.68	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||2028|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>G|||||4764|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4450T>G||||||
1	844789	.	G	A	28.67	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||2026|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||4762|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4452G>A||||||
1	844813	.	T	C	79.54	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>C|||||2002|,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||4738|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4476T>C||||||
1	844828	.	G	C	103.15	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>C|||||1987|,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>C|||||4723|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4491G>C||||||
1	844832	.	T	G	283.46	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||1983|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>G|||||4719|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4495T>G||||||
1	844860	.	T	C	637.06	.	AC=44;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>C|||||1955|,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||4691|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4523T>C||||||
1	844878	rs71509443	T	G	104.53	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||1937|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>G|||||4673|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4541T>G||||||
1	844880	.	G	A	25.68	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||1935|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||4671|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4543G>A||||||
1	844904	.	C	T	104.33	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||1911|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||4647|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4567C>T||||||
1	845008	rs7517925	T	G	837.31	.	AC=50;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||1807|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>G|||||4543|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4671T>G||||||
1	845036	.	G	T	226.57	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||1779|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||4515|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4699G>T||||||
1	845095	.	C	A	74.85	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>A|||||1720|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>A|||||4456|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4758C>A||||||
1	845098	.	T	G	733.81	.	AC=56;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||1717|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>G|||||4453|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4761T>G||||||
1	845140	.	C	A	13.5	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>A|||||1675|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>A|||||4411|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4803C>A||||||
1	845232	.	T	C	41.33	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>C|||||1583|,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||4319|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4895T>C||||||
1	845273	rs117039017	G	A	1137.0	.	AC=51;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||1542|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||4278|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4936G>A||||||
1	845274	rs112856858	G	T	3021.92	.	AC=122;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||1541|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||4277|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4937G>T||||||
1	845283	rs7366404	G	T	14005.87	.	AC=406;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||1532|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||4268|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4946G>T||||||
1	845311	.	C	T	92.94	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||1504|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||4240|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+4974C>T||||||
1	845593	.	G	A	63.52	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||1222|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||3958|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+5256G>A||||||
1	845635	rs117086422	C	T	1262.42	.	AC=75;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||1180|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||3916|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.124+5298C>T||||||
1	845915	.	G	A	15.4	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||900|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||3636|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-5215G>A||||||
1	845938	rs57760052	G	A	10488.93	.	AC=253;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||877|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||3613|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-5192G>A||||||
1	846069	.	C	A	9.97	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>A|||||746|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>A|||||3482|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-5061C>A||||||
1	846078	rs28612348	C	T	3184.22	.	AC=115;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||737|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||3473|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-5052C>T||||||
1	846236	.	G	A	120.05	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||579|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||3315|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4894G>A||||||
1	846248	rs114807918	A	C	66.82	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>C|||||567|,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>C|||||3303|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4882A>C||||||
1	846321	rs115354484	T	C	1414.43	.	AC=27;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>C|||||494|,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||3230|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4809T>C||||||
1	846338	rs4970334	A	G	36526.14	.	AC=745;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||477|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>G|||||3213|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4792A>G||||||
1	846398	rs58781670	G	A	14259.49	.	AC=276;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||417|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||3153|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4732G>A||||||
1	846465	rs60454217	C	T	11293.17	.	AC=196;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||350|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||3086|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4665C>T||||||
1	846489	rs4970333	T	C	36056.52	.	AC=667;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>C|||||326|,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||3062|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4641T>C||||||
1	846543	rs79396034	G	T	2718.07	.	AC=108;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>T|||||272|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||3008|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4587G>T||||||
1	846582	.	T	G	94.77	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1T>G|||||233|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>G|||||2969|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4548T>G||||||
1	846586	rs116802349	A	G	561.81	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1A>G|||||229|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>G|||||2965|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4544A>G||||||
1	846589	.	C	G	46.85	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>G|||||226|,G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>G|||||2962|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4541C>G||||||
1	846624	.	C	T	22.34	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||191|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||2927|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4506C>T||||||
1	846687	.	C	T	177.81	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||128|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||2864|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4443C>T||||||
1	846688	.	G	A	199.9	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||127|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2863|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4442G>A||||||
1	846743	.	G	A	46.91	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||72|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2808|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4387G>A||||||
1	846750	.	G	A	23.84	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1G>A|||||65|,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2801|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4380G>A||||||
1	846808	rs4475691	C	T	13364.88	.	AC=234;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.-1C>T|||||7|,T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||2743|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4322C>T||||||
1	846842	.	G	A	68.39	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2709|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4288G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/2|n.28G>A||||||
1	846854	rs111957712	G	A	2474.54	.	AC=40;ANN=A|splice_donor_variant&intron_variant|HIGH|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.39+1G>A||||||,A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2697|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4276G>A||||||
1	846861	.	T	C	210.34	.	AC=4;ANN=C|splice_region_variant&intron_variant|LOW|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.39+8T>C||||||,C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||2690|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4269T>C||||||
1	846864	rs950122	G	C	14456.39	.	AC=206;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>C|||||2687|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4266G>C||||||,C|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.39+11G>C||||||
1	846983	.	C	T	252.28	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||2568|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4147C>T||||||,T|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.39+130C>T||||||
1	847041	rs59518089	C	T	949.45	.	AC=30;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||2510|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4089C>T||||||,T|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.39+188C>T||||||
1	847105	.	G	A	64.78	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2446|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-4025G>A||||||,A|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.40-220G>A||||||
1	847141	rs28546248	C	G	445.31	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>G|||||2410|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3989C>G||||||,G|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.40-184C>G||||||
1	847175	.	G	T	39.1	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||2376|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3955G>T||||||,T|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.40-150G>T||||||
1	847228	rs3905286	C	T	18191.83	.	AC=221;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||2323|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3902C>T||||||,T|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.40-97C>T||||||
1	847250	rs7416129	G	A	78506.06	.	AC=1074;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2301|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4995|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||5000|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3880G>A||||||,A|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.40-75G>A||||||
1	847264	.	G	A	50.48	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2287|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4981|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4986|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3866G>A||||||,A|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.40-61G>A||||||
1	847297	rs11507768	G	A	11573.23	.	AC=136;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2254|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4948|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4953|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3833G>A||||||,A|intron_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|1/1|n.40-28G>A||||||
1	847390	.	G	A	36.15	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2161|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4855|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4860|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3740G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.105G>A||||||
1	847484	rs115931240	A	T	32.95	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>T|||||2067|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>A|||||4761|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>A|||||4766|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3646A>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.199A>T||||||
1	847491	rs28407778	G	A	12690.24	.	AC=234;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||2060|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4754|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4759|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3639G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.206G>A||||||
1	847514	rs28651100	C	T	258.02	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||2037|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||4731|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||4736|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3616C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.229C>T||||||
1	847658	rs79776465	T	C	899.91	.	AC=28;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||1893|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>G|||||4587|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>G|||||4592|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3472T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.373T>C||||||
1	847853	.	G	A	53.99	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1698|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4392|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4397|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4897|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3277G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.568G>A||||||
1	847983	rs79932038	C	T	518.63	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||1568|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||4262|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||4267|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||4767|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3147C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.698C>T||||||
1	848023	.	C	A	731.71	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>A|||||1528|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>T|||||4222|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>T|||||4227|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>T|||||4727|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3107C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.738C>A||||||
1	848063	.	G	A	193.59	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1488|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4182|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4187|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4687|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3067G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.778G>A||||||
1	848090	rs4246505	G	A	12566.64	.	AC=194;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1461|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4155|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4160|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4660|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-3040G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.805G>A||||||
1	848223	rs4246504	G	A	732.78	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1328|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||4022|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||4027|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4527|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2907G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.938G>A||||||
1	848297	rs114642624	G	A	1575.17	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1254|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||3948|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||3953|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4453|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2833G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1012G>A||||||
1	848343	.	G	A	9.19	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1208|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||3902|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||3907|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4407|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2787G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1058G>A||||||
1	848358	rs116301143	G	A	173.42	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1193|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||3887|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||3892|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4392|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2772G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1073G>A||||||
1	848397	.	C	T	9.05	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||1154|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||3848|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||3853|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||4353|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2733C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1112C>T||||||
1	848398	rs113582866	G	A	121.63	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1153|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||3847|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||3852|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4352|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2732G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1113G>A||||||
1	848440	.	C	T	79.19	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||1111|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||3805|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||3810|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||4310|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2690C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1155C>T||||||
1	848445	rs4626817	G	A	9429.05	.	AC=187;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||1106|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||3800|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||3805|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4305|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2685G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1160G>A||||||
1	848456	rs11507767	A	G	8463.58	.	AC=184;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>G|||||1095|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||3789|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||3794|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||4294|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2674A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1171A>G||||||
1	848527	.	G	T	187.54	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||1024|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>A|||||3718|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>A|||||3723|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>A|||||4223|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2603G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1242G>T||||||
1	848671	.	G	A	116.42	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||880|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||3574|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||3579|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||4079|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2459G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1386G>A||||||
1	848738	rs3829741	C	T	9455.4	.	AC=197;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||813|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||3507|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||3512|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||4012|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2392C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1453C>T||||||
1	848849	rs76923306	G	C	1069.58	.	AC=36;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>C|||||702|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>G|||||3396|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>G|||||3401|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>G|||||3901|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2281G>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1564G>C||||||
1	848856	rs74045393	A	G	67.41	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>G|||||695|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||3389|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||3394|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||3894|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2274A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1571A>G||||||
1	848884	.	T	C	30.97	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1T>C|||||667|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>G|||||3361|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>G|||||3366|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630A>G|||||3866|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2246T>C||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1599T>C||||||
1	849044	.	C	T	11.78	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||507|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||3201|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||3206|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||3706|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2086C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1759C>T||||||
1	849055	.	G	T	67.41	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>T|||||496|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>A|||||3190|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>A|||||3195|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>A|||||3695|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2075G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1770G>T||||||
1	849065	.	C	T	128.27	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||486|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||3180|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||3185|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||3685|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2065C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1780C>T||||||
1	849072	.	C	A	50.46	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>A|||||479|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>T|||||3173|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>T|||||3178|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>T|||||3678|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-2058C>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1787C>A||||||
1	849155	.	G	A	37.05	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||396|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||3090|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||3095|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||3595|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1975G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1870G>A||||||
1	849218	.	A	G	147.71	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>G|||||333|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||3027|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||3032|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||3532|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1912A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1933A>G||||||
1	849240	rs74045395	C	T	80.1	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||311|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||3005|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||3010|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||3510|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1890C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1955C>T||||||
1	849252	.	G	A	37.42	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||299|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||2993|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||2998|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||3498|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1878G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.1967G>A||||||
1	849285	rs113127482	G	A	119.73	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||266|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||2960|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||2965|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||3465|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1845G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2000G>A||||||
1	849344	.	C	G	11.25	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>G|||||207|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>C|||||2901|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>C|||||2906|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>C|||||3406|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1786C>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2059C>G||||||
1	849379	.	G	A	32.92	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||172|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||2866|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||2871|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||3371|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1751G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2094G>A||||||
1	849440	rs79376265	C	T	4825.09	.	AC=99;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||111|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||2805|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||2810|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||3310|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1690C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2155C>T||||||
1	849441	rs28495095	A	G	2591.7	.	AC=94;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1A>G|||||110|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||2804|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||2809|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||3309|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1689A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2156A>G||||||
1	849448	.	G	A	120.94	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1G>A|||||103|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||2797|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||2802|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||3302|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1682G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2163G>A||||||
1	849524	rs114473058	C	T	619.38	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.-1C>T|||||27|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||2721|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||2726|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||3226|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1606C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2239C>T||||||
1	849553	rs6685456	A	G	6238.41	.	AC=137;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||2692|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||2697|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||3197|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1577A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2268A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/2|n.3A>G||||||
1	849803	.	C	T	277.23	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||2442|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||2447|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||2947|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1327C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2518C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/2|n.253C>T||||||
1	849813	rs112774075	C	T	1119.72	.	AC=29;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||2432|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||2437|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||2937|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1317C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2528C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/2|n.263C>T||||||
1	849832	.	A	T	23.64	.	AC=2;ANN=T|splice_region_variant&intron_variant|LOW|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.274+8A>T||||||,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>A|||||2413|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>A|||||2418|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>A|||||2918|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1298A>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2547A>T||||||
1	849907	rs57668572	C	T	2527.25	.	AC=102;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||2338|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||2343|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||2843|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1223C>T||||||,T|intron_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.274+83C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2622C>T||||||
1	849998	rs13303222	A	G	47383.6	.	AC=792;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||2247|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||2252|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||2752|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1132A>G||||||,G|intron_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.274+174A>G||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2713A>G||||||
1	850062	rs28723578	A	T	12254.71	.	AC=214;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>A|||||2183|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>A|||||2188|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>A|||||2688|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1068A>T||||||,T|intron_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.275-121A>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2777A>T||||||
1	850110	.	G	T	68.89	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>A|||||2135|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>A|||||2140|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>A|||||2640|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1020G>T||||||,T|intron_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.275-73G>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2825G>T||||||
1	850115	rs60824793	C	T	201.64	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||2130|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||2135|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||2635|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1015C>T||||||,T|intron_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.275-68C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2830C>T||||||
1	850116	.	G	A	42.4	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||2129|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||2134|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||2634|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1014G>A||||||,A|intron_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.275-67G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2831G>A||||||
1	850123	rs28622257	C	T	10366.21	.	AC=183;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||2122|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||2127|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||2627|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-1007C>T||||||,T|intron_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|1/1|n.275-60C>T||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2838C>T||||||
1	850218	rs6664536	T	A	29409.43	.	AC=475;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>T|||||2027|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>T|||||2032|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630A>T|||||2532|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-912T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.2933T>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|2/2|n.310T>A||||||
1	850324	.	G	A	4935.05	.	AC=90;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||1921|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||1926|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||2426|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-806G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA|2/2|n.3039G>A||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA|2/2|n.416G>A||||||
1	850371	rs6679046	G	T	28128.39	.	AC=527;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>T|||||43|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>T|||||20|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>A|||||1874|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>A|||||1879|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>A|||||2379|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-759G>T||||||
1	850373	.	A	G	239.11	.	AC=7;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||45|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||22|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||1872|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||1877|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||2377|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-757A>G||||||
1	850400	.	G	A	180.98	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||72|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||49|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||1845|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||1850|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||2350|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-730G>A||||||
1	850487	.	C	T	291.41	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||159|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||136|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||1758|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||1763|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||2263|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-643C>T||||||
1	850528	rs114889920	A	G	2432.46	.	AC=82;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||200|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||177|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||1717|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||1722|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||2222|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-602A>G||||||
1	850598	.	C	T	21.66	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||270|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||247|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||1647|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||1652|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||2152|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-532C>T||||||
1	850780	rs6657440	C	T	28269.91	.	AC=528;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||452|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||429|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||1465|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||1470|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||1970|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-350C>T||||||
1	850824	.	G	A	12.0	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||496|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||473|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||1421|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||1426|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||1926|,A|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-306G>A||||||
1	850870	.	C	T	171.88	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||542|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||519|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||1375|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||1380|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||1880|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-260C>T||||||
1	850910	rs74045396	C	T	503.81	.	AC=13;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||582|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||559|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||1335|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||1340|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||1840|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-220C>T||||||
1	851026	.	T	G	14.66	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>G|||||698|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>G|||||675|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>C|||||1219|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>C|||||1224|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630A>C|||||1724|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-104T>G||||||
1	851030	rs79709025	G	C	5672.71	.	AC=101;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||702|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||679|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>G|||||1215|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>G|||||1220|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>G|||||1720|,C|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-100G>C||||||
1	851040	.	C	T	49.58	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||712|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||689|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||1205|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||1210|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||1710|,T|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-90C>T||||||
1	851113	.	T	G	36.63	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>G|||||785|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>G|||||762|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>C|||||1132|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>C|||||1137|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630A>C|||||1637|,G|intron_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|1/1|n.125-17T>G||||||
1	851147	rs116389146	T	A	395.08	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>A|||||819|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>A|||||796|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>T|||||1098|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>T|||||1103|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630A>T|||||1603|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.142T>A||||||
1	851163	.	G	A	54.45	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||835|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||812|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||1082|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||1087|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||1587|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.158G>A||||||
1	851190	rs28609852	G	A	13090.51	.	AC=226;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||862|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||839|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||1055|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||1060|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||1560|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.185G>A||||||
1	851198	.	G	A	145.43	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||870|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||847|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||1047|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||1052|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||1552|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.193G>A||||||
1	851204	rs28552953	G	C	11890.33	.	AC=211;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||876|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||853|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>G|||||1041|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>G|||||1046|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>G|||||1546|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.199G>C||||||
1	851230	.	T	C	37.96	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>C|||||902|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>C|||||879|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>G|||||1015|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>G|||||1020|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630A>G|||||1520|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.225T>C||||||
1	851343	.	C	T	134.06	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||1015|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||992|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||902|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||907|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||1407|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.338C>T||||||
1	851355	.	G	A	10.37	.	AC=1;ANN=A|splice_region_variant&non_coding_exon_variant|LOW|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA|2/2|n.350G>A||||||,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1027|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1004|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||890|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||895|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||1395|
1	851390	rs72631889	G	T	847.17	.	AC=21;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>T|||||34|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>T|||||1062|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>T|||||1039|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>A|||||855|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>A|||||860|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>A|||||1360|,T|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851436	rs114176538	G	C	70.62	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||80|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||1108|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||1085|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>G|||||809|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>G|||||814|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>G|||||1314|,C|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851499	rs4970465	A	G	33391.09	.	AC=712;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||143|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||1171|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||1148|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||746|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||751|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||1251|,G|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851535	.	C	T	16.76	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||179|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||1207|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||1184|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||710|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||715|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||1215|,T|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851757	rs62677860	A	G	34258.77	.	AC=826;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||401|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||1429|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||1406|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152T>C|||||488|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389T>C|||||493|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||993|,G|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851762	.	C	T	13.99	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||406|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||1434|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||1411|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||483|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||488|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||988|,T|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851763	.	G	A	16.99	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||407|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1435|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1412|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||482|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||487|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||987|,A|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851766	.	G	A	32.38	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||410|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1438|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1415|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||479|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||484|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||984|,A|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851790	rs114023986	C	T	221.25	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||434|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||1462|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||1439|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||455|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||460|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||960|,T|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851791	.	G	A	19.17	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||435|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1463|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1440|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||454|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||459|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||959|,A|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	851849	.	G	C	29.18	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||493|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||1521|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||1498|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>G|||||396|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>G|||||401|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>G|||||901|,C|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852037	rs4970463	G	A	11870.77	.	AC=341;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||681|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1709|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1686|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||208|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||213|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||713|,A|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852063	rs28436996	G	A	13702.04	.	AC=400;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||707|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1735|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1712|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||182|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||187|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||687|,A|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852133	rs7518702	C	T	31028.83	.	AC=683;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||777|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||1805|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||1782|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||112|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||117|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||617|,T|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852174	.	G	A	76.35	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||818|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1846|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1823|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||71|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||76|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||576|,A|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852182	.	C	T	43.33	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||826|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||1854|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||1831|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152G>A|||||63|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389G>A|||||68|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||568|,T|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852187	rs116447845	G	A	142.08	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||831|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||1859|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||1836|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152C>T|||||58|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389C>T|||||63|,A|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>T|||||563|,A|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852211	.	T	C	59.82	.	AC=10;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>C|||||855|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>C|||||1883|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>C|||||1860|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.*4152A>G|||||34|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.*1389A>G|||||39|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630A>G|||||539|,C|intergenic_region|MODIFIER|RP11-54O7.16-RP11-54O7.3|ENSG00000272438-ENSG00000223764|intergenic_region|ENSG00000272438-ENSG00000223764|||||||||
1	852312	.	C	T	15.65	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||956|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||1984|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||1961|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||438|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.4085G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.1327G>A||||||
1	852339	.	C	T	149.44	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||983|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||2011|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||1988|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||411|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.4058G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.1300G>A||||||
1	852443	rs7531543	A	C	5500.29	.	AC=120;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>C|||||1087|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>C|||||2115|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>C|||||2092|,C|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>G|||||307|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3954T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.1196T>G||||||
1	852502	rs116263168	C	T	923.78	.	AC=26;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||1146|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||2174|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||2151|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||248|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3895G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.1137G>A||||||
1	852517	rs115083420	A	G	956.1	.	AC=23;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||1161|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||2189|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||2166|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630T>C|||||233|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3880T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.1122T>C||||||
1	852584	.	C	G	108.81	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>G|||||1228|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>G|||||2256|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>G|||||2233|,G|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>C|||||166|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3813G>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.1055G>C||||||
1	852650	rs2272758	G	T	5631.96	.	AC=118;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>T|||||1294|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>T|||||2322|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>T|||||2299|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630C>A|||||100|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3747C>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.989C>A||||||
1	852664	rs28605311	C	T	7732.25	.	AC=169;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||1308|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||2336|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||2313|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||86|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3733G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.975G>A||||||
1	852683	.	C	T	80.06	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||1327|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||2355|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||2332|,T|downstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.*630G>A|||||67|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3714G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.956G>A||||||
1	852758	rs4970462	G	C	6859.83	.	AC=160;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||1402|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||2430|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||2407|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3639C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.881C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|2/2|n.622C>G||||||
1	852772	rs28587382	G	A	411.76	.	AC=13;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1416|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2444|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2421|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3625C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.867C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|2/2|n.608C>T||||||
1	852804	.	G	A	35.89	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1448|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2476|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2453|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3593C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.835C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|2/2|n.576C>T||||||
1	852820	.	T	C	96.8	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>C|||||1464|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>C|||||2492|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>C|||||2469|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3577A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.819A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|2/2|n.560A>G||||||
1	852861	.	G	A	166.01	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1505|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2533|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2510|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3536C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.778C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|2/2|n.519C>T||||||
1	852866	.	G	A	151.65	.	AC=4;ANN=A|splice_region_variant&non_coding_exon_variant|LOW|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|2/2|n.514C>T||||||,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1510|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2538|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2515|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3531C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.773C>T||||||
1	852875	rs13303369	C	T	40344.33	.	AC=596;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||1519|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||2547|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||2524|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-9G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3522G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.764G>A||||||
1	852910	.	T	C	97.42	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>C|||||1554|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>C|||||2582|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>C|||||2559|,C|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-44A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3487A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.729A>G||||||
1	852964	rs4970461	T	G	38127.81	.	AC=761;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>G|||||1608|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>G|||||2636|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>G|||||2613|,G|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-98A>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3433A>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.675A>C||||||
1	853004	.	G	C	38.11	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||1648|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||2676|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||2653|,C|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-138C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3393C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.635C>G||||||
1	853067	.	G	C	5.57	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||1711|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||2739|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||2716|,C|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-201C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3330C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.572C>G||||||
1	853079	.	G	A	10.11	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1723|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2751|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2728|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-213C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3318C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.560C>T||||||
1	853089	rs78738176	G	C	81.87	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||1733|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||2761|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||2738|,C|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-223C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3308C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|4/4|n.550C>G||||||
1	853106	rs116090148	G	A	181.68	.	AC=6;ANN=A|splice_region_variant&intron_variant|LOW|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.539-6C>T||||||,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1750|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2778|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2755|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-240C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3291C>T||||||
1	853129	.	C	T	37.39	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||1773|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||2801|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||2778|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.539-29G>A||||||,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-263G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3268G>A||||||
1	853130	rs112599122	G	A	5817.75	.	AC=116;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1774|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2802|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2779|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.539-30C>T||||||,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.514-264C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3267C>T||||||
1	853239	rs4970380	A	G	5845.4	.	AC=137;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||1883|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||2911|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||2888|,G|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.539-139T>C||||||,G|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.513+163T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3158T>C||||||
1	853267	rs112944197	G	T	5892.28	.	AC=113;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>T|||||1911|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>T|||||2939|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>T|||||2916|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.538+135C>A||||||,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.513+135C>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3130C>A||||||
1	853272	.	G	A	128.45	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||1916|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||2944|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||2921|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.538+130C>T||||||,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.513+130C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3125C>T||||||
1	853378	.	G	A	87.13	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||2022|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||3050|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||3027|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.538+24C>T||||||,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.513+24C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3019C>T||||||
1	853394	.	G	A	147.09	.	AC=7;ANN=A|splice_region_variant&intron_variant|LOW|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/3|n.538+8C>T||||||,A|splice_region_variant&intron_variant|LOW|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/1|n.513+8C>T||||||,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||2038|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||3066|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||3043|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.3003C>T||||||
1	853478	.	A	T	9.47	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>T|||||2122|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>T|||||3150|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>T|||||3127|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2919T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/4|n.462T>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.437T>A||||||
1	853488	rs77644389	G	A	6287.94	.	AC=102;ANN=A|splice_region_variant&non_coding_exon_variant|LOW|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|3/4|n.452C>T||||||,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||2132|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||3160|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||3137|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2909C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.427C>T||||||
1	853519	rs79376791	A	G	13.36	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||2163|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||3191|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||3168|,G|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-29T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2878T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.396T>C||||||
1	853542	.	C	T	8.98	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||2186|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||3214|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||3191|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-52G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2855G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.373G>A||||||
1	853594	.	C	T	7.86	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||2238|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||3266|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||3243|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-104G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2803G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.321G>A||||||
1	853596	.	A	G	292.42	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||2240|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||3268|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||3245|,G|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-106T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2801T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.319T>C||||||
1	853652	rs115164521	G	A	19.47	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||2296|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||3324|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||3301|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-162C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2745C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.263C>T||||||
1	853707	.	C	T	46.56	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||2351|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||3379|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||3356|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-217G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2690G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.208G>A||||||
1	853805	rs3748591	C	T	9085.39	.	AC=162;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||2449|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||3477|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||3454|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-315G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2592G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.110G>A||||||
1	853817	.	T	C	20.15	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>C|||||2461|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>C|||||3489|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>C|||||3466|,C|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.450-327A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2580A>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.98A>G||||||
1	853877	rs114767200	G	A	105.79	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||2521|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||3549|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||3526|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.449+328C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2520C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron|1/2|n.38C>T||||||
1	853932	.	C	T	55.98	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||18|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||2576|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||3604|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||3581|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.449+273G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2465G>A||||||
1	853954	rs1806509	C	A	24814.71	.	AC=488;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>T|||||40|,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>A|||||2598|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>A|||||3626|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>A|||||3603|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.449+251G>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2443G>T||||||
1	853958	.	T	G	27.83	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>C|||||44|,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>G|||||2602|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043T>G|||||3630|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443T>G|||||3607|,G|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.449+247A>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2439A>C||||||
1	854121	.	G	A	10.5	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||207|,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||2765|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||3793|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||3770|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.449+84C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2276C>T||||||
1	854168	rs79188446	C	T	5515.26	.	AC=96;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||254|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||2812|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||3840|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||3817|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/3|n.449+37G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2229G>A||||||
1	854250	rs7537756	A	G	11258.95	.	AC=206;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||336|,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||2894|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||3922|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||3899|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2147T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/4|n.404T>C||||||
1	854251	.	C	T	48.17	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||337|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||2895|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||3923|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||3900|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.2146G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|2/4|n.403G>A||||||
1	854406	.	G	C	11.31	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>G|||||492|,C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||3050|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>C|||||4078|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>C|||||4055|,C|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/3|n.359-111C>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1991C>G||||||
1	854407	.	G	A	27.06	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||493|,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||3051|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||4079|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||4056|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/3|n.359-112C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1990C>T||||||
1	854429	rs72902552	G	A	6993.93	.	AC=139;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||515|,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||3073|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||4101|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||4078|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/3|n.359-134C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1968C>T||||||
1	854508	rs111797808	G	A	1978.23	.	AC=42;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||594|,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||3152|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||4180|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||4157|,A|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/3|n.358+207C>T||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1889C>T||||||
1	854529	.	C	T	64.54	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||615|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||3173|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||4201|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||4178|,T|intron_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/3|n.358+186G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1868G>A||||||
1	854773	.	C	T	28.25	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||859|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||3417|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||4445|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||4422|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1624G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/4|n.300G>A||||||
1	854777	rs13303019	A	G	12921.78	.	AC=336;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||863|,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||3421|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||4449|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||4426|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1620T>C||||||,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/4|n.296T>C||||||
1	854793	rs80174979	A	C	26.54	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>G|||||879|,C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>C|||||3437|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>C|||||4465|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>C|||||4442|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1604T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/4|n.280T>G||||||
1	854838	.	C	T	222.4	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||924|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||3482|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||4510|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||4487|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1559G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/4|n.235G>A||||||
1	854918	.	C	T	93.82	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||1004|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||3562|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||4590|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||4567|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1479G>A||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/4|n.155G>A||||||
1	854978	rs13303057	A	C	23452.4	.	AC=442;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>G|||||1064|,C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>C|||||3622|,C|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>C|||||4650|,C|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>C|||||4627|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1419T>G||||||,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA|1/4|n.95T>G||||||
1	855075	rs6673914	C	G	24283.88	.	AC=454;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||3|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>C|||||1161|,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>G|||||3719|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>G|||||4747|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>G|||||4724|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1322G>C||||||
1	855163	.	C	T	171.2	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||91|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||1249|,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||3807|,T|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043C>T|||||4835|,T|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443C>T|||||4812|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:855106_855255|||||||||,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1234G>A||||||
1	855168	rs78128413	G	A	9636.24	.	AC=178;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||96|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1254|,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||3812|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||4840|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||4817|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:855106_855255|||||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1229C>T||||||
1	855252	rs115439722	G	A	1431.06	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||180|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1338|,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||3896|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||4924|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||4901|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:855106_855255|||||||||,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1145C>T||||||
1	855286	.	G	A	93.14	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||214|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1372|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4974|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||3930|,A|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043G>A|||||4958|,A|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443G>A|||||4935|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1111C>T||||||
1	855324	.	A	G	35.12	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>C|||||252|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||1410|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>G|||||4936|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||3968|,G|downstream_gene_variant|MODIFIER|RP11-54O7.1|ENSG00000230699|transcript|ENST00000448179|lincRNA||n.*3043A>G|||||4996|,G|downstream_gene_variant|MODIFIER|RP11-54O7.2|ENSG00000241180|transcript|ENST00000398216|lincRNA||n.*443A>G|||||4973|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1073T>C||||||
1	855358	.	G	C	131.74	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>G|||||286|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>G|||||1444|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>C|||||4902|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>C|||||4002|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1039C>G||||||
1	855359	rs113648919	C	T	5864.72	.	AC=93;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||287|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||1445|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||4901|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||4003|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.1038G>A||||||
1	855479	.	G	A	82.23	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||407|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1565|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4781|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4123|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.918C>T||||||
1	855480	.	C	A	12.41	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>T|||||408|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>T|||||1566|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>A|||||4780|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>A|||||4124|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.917G>T||||||
1	855567	.	C	T	19.36	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||495|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||1653|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||4693|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||4963|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||4211|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.830G>A||||||
1	855650	.	G	A	266.98	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||578|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1736|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4610|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4880|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4294|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.747C>T||||||
1	855658	rs115665195	G	A	23.64	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||586|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1744|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4602|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4872|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4302|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.739C>T||||||
1	855709	.	G	A	25.76	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||637|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1795|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4551|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4821|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4353|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.688C>T||||||
1	855774	rs77595185	G	A	5152.28	.	AC=93;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||702|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1860|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4486|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4756|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4418|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.623C>T||||||
1	855878	rs117282503	T	C	1953.61	.	AC=50;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>G|||||806|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>G|||||1964|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>C|||||4382|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>C|||||4652|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>C|||||4522|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.519A>G||||||
1	855895	.	G	A	30.04	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||823|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||1981|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4365|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4635|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4539|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.502C>T||||||
1	855949	rs77568453	G	A	4673.02	.	AC=61;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||877|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2035|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4311|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4581|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4593|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.448C>T||||||
1	855968	rs115516786	C	T	404.22	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||896|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||2054|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||4292|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||4562|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||4612|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.429G>A||||||
1	855996	rs114463016	C	T	632.43	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||924|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||2082|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||4264|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||4534|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||4640|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.401G>A||||||
1	856041	rs61769717	G	A	10957.08	.	AC=169;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||969|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2127|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4219|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4489|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4685|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.356C>T||||||
1	856042	rs115560414	C	T	2729.8	.	AC=63;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||970|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||2128|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||4218|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||4488|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||4686|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.355G>A||||||
1	856044	.	C	T	60.8	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||972|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||2130|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||4216|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||4486|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>T|||||4688|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.353G>A||||||
1	856055	.	G	T	18.84	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>A|||||983|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>A|||||2141|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>T|||||4205|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>T|||||4475|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>T|||||4699|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.342C>A||||||
1	856099	rs28534711	T	G	17606.99	.	AC=289;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>C|||||1027|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>C|||||2185|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>G|||||4161|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>G|||||4431|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351T>G|||||4743|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.298A>C||||||
1	856108	rs28742275	A	G	13252.63	.	AC=280;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>C|||||1036|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||2194|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>G|||||4152|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61A>G|||||4422|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351A>G|||||4752|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.289T>C||||||
1	856121	.	G	A	69.96	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4997|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1049|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2207|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||4139|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4409|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4765|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.276C>T||||||
1	856172	rs116711631	C	A	93.21	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>A|||||4946|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>T|||||1100|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>T|||||2258|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>A|||||4088|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>A|||||4358|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>A|||||4816|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.225G>T||||||
1	856329	rs7414599	C	G	6975.88	.	AC=146;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||4789|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||1257|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>C|||||2415|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||3931|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||4201|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351C>G|||||4973|,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||4935|WARNING_TRANSCRIPT_NO_STOP_CODON,G|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.68G>C||||||
1	856352	rs75421909	G	A	848.07	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4766|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1280|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2438|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3908|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4178|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|RP11-54O7.16|ENSG00000272438|transcript|ENST00000607769|lincRNA||n.*351G>A|||||4996|,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4912|WARNING_TRANSCRIPT_NO_STOP_CODON,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.45C>T||||||
1	856374	.	G	A	46.42	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4744|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1302|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2460|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3886|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4156|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4890|WARNING_TRANSCRIPT_NO_STOP_CODON,A|non_coding_exon_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron|1/1|n.23C>T||||||
1	856403	.	G	A	8.51	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||7|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4715|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1331|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2489|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3857|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4127|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4861|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856405	.	G	A	12.79	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||9|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4713|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1333|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2491|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3855|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||4125|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4859|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856460	rs115993524	G	C	40.91	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>G|||||64|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>C|||||4658|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>G|||||1388|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>G|||||2546|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>C|||||3800|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>C|||||4070|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>G|||||4804|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856476	rs4040605	A	G	8958.74	.	AC=262;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1T>C|||||80|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84A>G|||||4642|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>C|||||1404|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||2562|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>G|||||3784|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61A>G|||||4054|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336T>C|||||4788|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856510	.	C	T	87.17	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>A|||||114|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>T|||||4608|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||1438|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||2596|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||3750|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||4020|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>A|||||4754|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856557	.	A	C	145.91	.	AC=14;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1T>G|||||161|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84A>C|||||4561|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>G|||||1485|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>G|||||2643|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>C|||||3703|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61A>C|||||3973|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336T>G|||||4707|WARNING_TRANSCRIPT_NO_STOP_CODON,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:856546_856695|||||||||,C|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856583	.	G	A	553.39	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||187|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4535|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1511|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2669|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3677|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3947|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4681|WARNING_TRANSCRIPT_NO_STOP_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:856546_856695|||||||||,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856731	.	G	T	75.15	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>A|||||335|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>T|||||4387|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>A|||||1659|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>A|||||2817|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>T|||||3529|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>T|||||3799|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>A|||||4533|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856867	.	G	A	430.51	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||471|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4251|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1795|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||2953|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3393|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3663|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4397|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856950	rs114141787	T	G	62.94	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1A>C|||||554|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84T>G|||||4168|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>C|||||1878|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>C|||||3036|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>G|||||3310|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>G|||||3580|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336A>C|||||4314|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	856999	rs115003957	G	A	2983.02	.	AC=50;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||603|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4119|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1927|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3085|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3261|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3531|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4265|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857003	.	G	A	351.11	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||607|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4115|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1931|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3089|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3257|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3527|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4261|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857008	rs115811719	C	G	30.88	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||612|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||4110|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||1936|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>C|||||3094|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||3252|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||3522|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||4256|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857010	rs117567004	G	A	22.35	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||614|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||4108|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||1938|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3096|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3250|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3520|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4254|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857176	rs28693927	G	A	1390.83	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||780|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||3942|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||2104|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3262|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3084|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3354|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4088|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857177	rs28409649	T	C	13799.75	.	AC=270;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1A>G|||||781|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84T>C|||||3941|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>G|||||2105|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>G|||||3263|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>C|||||3083|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>C|||||3353|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336A>G|||||4087|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857223	.	G	A	22.79	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||827|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||3895|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||2151|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3309|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3037|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3307|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4041|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857236	rs115278049	G	A	9.1	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||840|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||3882|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||2164|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3322|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||3024|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||3294|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||4028|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857349	.	C	T	59.79	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>A|||||953|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>T|||||3769|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||2277|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||3435|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||2911|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||3181|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>A|||||3915|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857410	.	C	A	16.07	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>T|||||1014|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>A|||||3708|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>T|||||2338|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>T|||||3496|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>A|||||2850|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>A|||||3120|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>T|||||3854|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857443	rs56663360	C	T	8941.33	.	AC=167;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>A|||||1047|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>T|||||3675|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||2371|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||3529|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||2817|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||3087|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>A|||||3821|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857462	.	G	C	109.98	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>G|||||1066|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>C|||||3656|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>G|||||2390|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>G|||||3548|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>C|||||2798|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>C|||||3068|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>G|||||3802|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857653	rs59192718	C	G	2430.49	.	AC=63;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||1257|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||3465|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||2581|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>C|||||3739|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||2607|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||2877|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||3611|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857673	rs118178587	G	A	68.14	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||1277|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||3445|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||2601|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3759|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||2587|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||2857|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||3591|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857728	rs6689107	T	G	52920.19	.	AC=884;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1A>C|||||1332|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84T>G|||||3390|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>C|||||2656|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>C|||||3814|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>G|||||2532|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>G|||||2802|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336A>C|||||3536|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857828	rs6694982	A	G	552.69	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1T>C|||||1432|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84A>G|||||3290|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>C|||||2756|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||3914|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>G|||||2432|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61A>G|||||2702|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336T>C|||||3436|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	857870	.	G	A	25.99	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||1474|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||3248|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||2798|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||3956|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||2390|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||2660|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||3394|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858040	rs4970460	C	A	11201.59	.	AC=207;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>T|||||1644|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>A|||||3078|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>T|||||2968|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>T|||||4126|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>A|||||2220|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>A|||||2490|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>T|||||3224|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858051	rs4970459	C	T	12082.49	.	AC=217;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>A|||||1655|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>T|||||3067|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||2979|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||4137|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||2209|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||2479|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>A|||||3213|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858088	.	G	A	20.0	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||1692|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||3030|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||3016|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||4174|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||2172|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||2442|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||3176|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858106	.	G	A	34.53	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||1710|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||3012|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||3034|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||4192|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||2154|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||2424|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||3158|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858149	rs77520260	C	T	6078.78	.	AC=109;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>A|||||1753|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>T|||||2969|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||3077|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||4235|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||2111|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||2381|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>A|||||3115|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858160	rs74398968	A	G	105.45	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1T>C|||||1764|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84A>G|||||2958|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>C|||||3088|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||4246|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>G|||||2100|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61A>G|||||2370|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336T>C|||||3104|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858354	.	T	C	16.15	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1A>G|||||1958|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84T>C|||||2764|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>G|||||3282|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>G|||||4440|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>C|||||1906|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>C|||||2176|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336A>G|||||2910|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858585	.	C	G	164.74	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||2189|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||2533|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||3513|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>C|||||4671|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||1675|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||1945|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||2679|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858604	.	C	G	174.28	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||2208|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||2514|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||3532|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>C|||||4690|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||1656|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||1926|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||2660|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858686	rs116218067	G	A	126.06	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||2290|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||2432|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||3614|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>T|||||4772|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||1574|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||1844|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||2578|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858714	.	C	T	119.99	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>A|||||2318|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>T|||||2404|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>A|||||3642|,T|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1G>A|||||4800|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>T|||||1546|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>T|||||1816|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>A|||||2550|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858801	rs7418179	A	G	36184.73	.	AC=601;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1T>C|||||2405|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84A>G|||||2317|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>C|||||3729|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1T>C|||||4887|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>G|||||1459|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61A>G|||||1729|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336T>C|||||2463|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858867	rs116812713	G	C	127.32	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>G|||||2471|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>C|||||2251|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>G|||||3795|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1C>G|||||4953|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>C|||||1393|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>C|||||1663|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>G|||||2397|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	858895	.	T	C	31.94	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1A>G|||||2499|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84T>C|||||2223|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>G|||||3823|,C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000432961|retained_intron||n.-1A>G|||||4981|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>C|||||1365|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>C|||||1635|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336A>G|||||2369|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	859206	.	G	A	22.08	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||2810|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||1912|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||4134|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||1054|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||1324|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||2058|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	859404	rs71509444	C	G	2932.29	.	AC=164;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||3008|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||1714|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||4332|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||856|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||1126|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||1860|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	859685	rs111572704	G	A	566.4	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||3289|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||1433|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1C>T|||||4613|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90G>A|||||575|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||845|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||1579|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	859690	rs71509445	C	G	4072.63	.	AC=153;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||3294|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||1428|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||4618|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||570|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||840|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||1574|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	859701	rs71509446	C	G	4612.75	.	AC=175;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||3305|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||1417|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1G>C|||||4629|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90C>G|||||559|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>G|||||829|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||1563|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	859913	rs112703963	A	G	4277.73	.	AC=210;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1T>C|||||3517|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84A>G|||||1205|,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1T>C|||||4841|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90A>G|||||347|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61A>G|||||617|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336T>C|||||1351|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	859948	.	T	A	30.3	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1A>T|||||3552|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84T>A|||||1170|,A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000417705|lincRNA||n.-1A>T|||||4876|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.-90T>A|||||312|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61T>A|||||582|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336A>T|||||1316|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intergenic_region|MODIFIER|RP11-54O7.3-SAMD11|ENSG00000223764-ENSG00000187634|intergenic_region|ENSG00000223764-ENSG00000187634|||||||||
1	860416	rs61464428	G	A	8541.2	.	AC=271;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||4020|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||702|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||114|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||848|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-21+88G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860461	rs57465118	G	A	11746.89	.	AC=372;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||4065|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||657|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||69|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||803|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-21+133G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860504	rs78033073	G	A	530.2	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||4108|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||614|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61G>A|||||26|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||760|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-21+176G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860521	rs57924093	C	A	12282.56	.	AC=418;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>T|||||4125|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>A|||||597|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.-61C>A|||||9|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>T|||||743|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-21+193C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860688	rs60837925	G	A	5230.35	.	AC=198;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||4292|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||430|,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||576|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-21+360G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-21+119G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860778	rs61338526	A	G	3228.29	.	AC=182;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1T>C|||||4382|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84A>G|||||340|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||4914|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336T>C|||||486|WARNING_TRANSCRIPT_NO_STOP_CODON,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:860726_860875|||||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-21+450A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-21+209A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860854	rs57816555	T	C	9452.15	.	AC=346;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1A>G|||||4458|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84T>C|||||264|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>C|||||4838|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336A>G|||||410|WARNING_TRANSCRIPT_NO_STOP_CODON,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:860726_860875|||||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-20-448T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-21+285T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860857	.	G	A	108.18	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||4461|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||261|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||4835|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||407|WARNING_TRANSCRIPT_NO_STOP_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:860726_860875|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-20-445G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-21+288G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860956	rs28632468	C	G	148.06	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||4560|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84C>G|||||162|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>G|||||4736|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336G>C|||||308|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-20-346C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-20-346C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	860957	rs28729864	G	A	78.54	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||4561|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>A|||||161|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||4735|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||307|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-20-345G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-20-345G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861008	rs28521172	G	C	11895.81	.	AC=428;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>G|||||4612|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.-84G>C|||||110|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>C|||||4684|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>G|||||256|WARNING_TRANSCRIPT_NO_STOP_CODON,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:860966_861115|||||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-20-294G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-20-294G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861261	.	G	A	202.84	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1C>T|||||4865|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||4431|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.*336C>T|||||3|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|1/13|c.-20-41G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-20-41G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-20-41G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861292	.	C	G	11.81	.	AC=1;ANN=G|missense_variant|MODERATE|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|6/6|c.308G>C|p.Arg103Thr|308/336|308/336|103/111||WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|RP11-54O7.3|ENSG00000223764|transcript|ENST00000609207|retained_intron||n.-1G>C|||||4896|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>G|||||4400|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|1/13|c.-20-10C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|1/6|c.-20-10C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|1/4|c.-20-10C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861530	rs74045401	G	A	8.84	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||4162|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+137G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-124C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+137G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+137G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861605	rs116325138	C	T	73.62	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||4087|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+212C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-199G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+212C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+212C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861630	rs2879816	G	A	30992.63	.	AC=660;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||4062|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+237G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-224C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+237G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+237G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861645	.	C	T	14.85	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||4047|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+252C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-239G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+252C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+252C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861728	.	C	T	690.18	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3964|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+335C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-322G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+335C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+335C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861754	.	G	T	11.95	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>T|||||3938|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+361G>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-348C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+361G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+361G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861808	rs13302982	A	G	52257.15	.	AC=933;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||3884|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+415A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-402T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+415A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+415A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861859	.	G	A	86.67	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||3833|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+466G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-453C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+466G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+466G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	861947	.	C	T	22.07	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3745|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+554C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-541G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+554C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+554C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862027	.	G	T	274.58	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>T|||||3665|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+634G>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-621C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+634G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+634G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862072	rs76842830	C	T	388.26	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3620|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+679C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-666G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+679C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+679C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862093	rs13303291	T	C	41787.11	.	AC=778;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>C|||||3599|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+700T>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-687A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+700T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+700T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862124	rs13303101	A	G	43708.38	.	AC=864;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||3568|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+731A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-718T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+731A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+731A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862157	.	G	C	28.36	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>C|||||3535|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+764G>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-751C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+764G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+764G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862186	rs74442310	A	G	7232.8	.	AC=112;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||3506|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+793A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-780T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+793A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+793A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862246	.	C	T	99.41	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3446|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+853C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-840G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+853C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+853C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862301	.	C	T	17.07	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3391|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+908C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-895G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+908C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+908C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862302	.	G	A	156.72	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||3390|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+909G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-896C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+909G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+909G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862309	.	C	T	64.67	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3383|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+916C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.194-903G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+916C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+916C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862353	.	C	T	131.83	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3339|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+960C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+902G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+960C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+960C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862383	rs6680268	C	T	39437.71	.	AC=754;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3309|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+990C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+872G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+990C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+990C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862389	rs6693546	A	G	36635.44	.	AC=725;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||3303|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+996A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+866T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+996A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+996A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862396	.	C	T	43.84	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3296|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1003C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+859G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1003C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1003C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862515	rs114199821	C	T	654.05	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3177|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1122C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+740G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1122C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1122C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862516	.	C	A	180.12	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>A|||||3176|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1123C>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+739G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1123C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1123C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862602	.	C	T	69.49	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3090|WARNING_TRANSCRIPT_NO_START_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:862526_862675|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1209C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+653G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1209C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1209C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862668	rs114644749	C	T	550.28	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||3024|WARNING_TRANSCRIPT_NO_START_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:862526_862675|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1275C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+587G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1275C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1275C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862683	rs115239915	G	A	2560.34	.	AC=79;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||3009|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1290G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+572C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1290G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1290G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862708	.	C	G	103.41	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>G|||||2984|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1315C>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+547G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1315C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1315C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862714	.	A	G	22.24	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||2978|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1321A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+541T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1321A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1321A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862772	rs114672948	A	G	437.61	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||2920|WARNING_TRANSCRIPT_NO_START_CODON,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:862766_862915|||||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1379A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+483T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1379A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1379A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862791	rs114385913	C	T	96.17	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2901|WARNING_TRANSCRIPT_NO_START_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:862766_862915|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1398C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+464G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1398C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1398C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862858	.	G	A	37.28	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2834|WARNING_TRANSCRIPT_NO_START_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:862766_862915|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1465G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+397C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1465G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1465G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	862866	rs3892970	C	T	20166.96	.	AC=487;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2826|WARNING_TRANSCRIPT_NO_START_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:862766_862915|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1473C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+389G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1473C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1473C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863124	rs4040604	G	T	49794.93	.	AC=884;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>T|||||2568|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1731G>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+131C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1731G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1731G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863138	rs79585663	A	C	5492.4	.	AC=126;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>C|||||2554|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1745A>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/5|c.193+117T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1745A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1745A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863258	.	A	G	5.23	.	AC=1;ANN=G|missense_variant|MODERATE|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|5/6|c.190T>C|p.Trp64Arg|190/336|190/336|64/111||WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||2434|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1865A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1865A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1865A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863284	.	C	T	93.65	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2408|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1891C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-23G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1891C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1891C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863285	.	G	A	51.89	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2407|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1892G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-24C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1892G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1892G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863315	.	C	T	221.64	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2377|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.72+1922C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-54G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.72+1922C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.72+1922C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863499	rs28718350	T	C	820.21	.	AC=34;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>C|||||2193|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-2036T>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-238A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-2036T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-2036T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863501	rs28649395	T	C	954.76	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>C|||||2191|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-2034T>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-240A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-2034T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-2034T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863508	rs7410984	G	T	5978.86	.	AC=157;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>T|||||2184|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-2027G>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-247C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-2027G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-2027G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863509	.	C	T	64.54	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2183|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-2026C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-248G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-2026C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-2026C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863511	rs28626846	T	C	4679.91	.	AC=133;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>C|||||2181|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-2024T>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-250A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-2024T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-2024T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863521	.	C	G	1267.94	.	AC=58;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>G|||||2171|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-2014C>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-260G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-2014C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-2014C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863538	.	C	T	20.46	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2154|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1997C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-277G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1997C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1997C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863540	rs113291104	G	A	59.9	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2152|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1995G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-279C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1995G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1995G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863548	rs112703377	C	T	53.63	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2144|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1987C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-287G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1987C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1987C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863556	rs7410998	G	A	13151.89	.	AC=430;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2136|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1979G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-295C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1979G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1979G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863562	rs7417972	A	C	12145.19	.	AC=439;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>C|||||2130|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1973A>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-301T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1973A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1973A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863569	.	C	G	283.18	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>G|||||2123|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1966C>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-308G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1966C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1966C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863570	.	G	C	81.85	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>C|||||2122|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1965G>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-309C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1965G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1965G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863576	.	A	G	87.61	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||2116|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1959A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-315T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1959A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1959A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863582	rs7417973	A	G	479.01	.	AC=26;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||2110|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1953A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-321T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1953A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1953A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863590	rs61769724	G	A	67.45	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2102|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1945G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-329C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1945G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1945G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863600	rs79599208	G	A	54.83	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2092|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1935G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-339C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1935G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1935G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863603	rs112468011	T	A	82.58	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>A|||||2089|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1932T>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-342A>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1932T>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1932T>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863618	.	A	G	121.92	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||2074|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1917A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-357T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1917A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1917A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863632	rs28403979	C	T	2595.03	.	AC=119;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||2060|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1903C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-371G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1903C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1903C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863641	rs28569249	G	A	1796.24	.	AC=79;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2051|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1894G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-380C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1894G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1894G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863644	rs28739566	T	C	1801.27	.	AC=87;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>C|||||2048|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1891T>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-383A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1891T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1891T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863645	.	G	A	9.58	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||2047|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1890G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-384C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1890G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1890G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863689	rs7417994	A	G	12305.01	.	AC=475;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||2003|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1846A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-428T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1846A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1846A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863696	rs35717056	C	T	1360.33	.	AC=55;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1996|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1839C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-435G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1839C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1839C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863745	.	C	G	36.87	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>G|||||1947|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1790C>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-484G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1790C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1790C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863751	.	A	G	42.47	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||1941|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1784A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-490T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1784A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1784A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863767	.	G	A	300.73	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1925|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1768G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-506C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1768G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1768G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863776	rs35485427	A	C	10150.89	.	AC=205;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>C|||||1916|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1759A>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-515T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1759A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1759A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863843	rs35599603	C	T	9718.12	.	AC=245;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1849|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1692C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-582G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1692C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1692C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863863	rs35854196	G	A	12206.8	.	AC=255;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1829|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1672G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-602C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1672G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1672G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863968	.	G	A	12.35	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1724|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1567G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-707C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1567G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1567G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863978	rs74047403	G	A	4765.91	.	AC=88;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1714|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1557G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-717C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1557G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1557G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	863989	rs116646048	T	A	62.27	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>A|||||1703|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1546T>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-728A>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1546T>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1546T>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864002	rs1806501	G	C	7684.61	.	AC=181;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>C|||||1690|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1533G>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-741C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1533G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1533G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864072	.	G	A	26.94	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1620|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1463G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-811C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1463G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1463G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864091	.	G	A	39.67	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1601|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1444G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-830C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1444G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1444G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864238	.	G	A	91.18	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1454|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1297G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-977C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1297G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1297G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864241	rs74047404	C	T	2264.83	.	AC=57;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1451|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1294C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-980G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1294C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1294C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864287	.	C	T	58.02	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1405|WARNING_TRANSCRIPT_NO_START_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:864266_864415|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1248C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-1026G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1248C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1248C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864310	.	C	T	74.8	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1382|WARNING_TRANSCRIPT_NO_START_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:864266_864415|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1225C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-1049G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1225C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1225C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864314	.	G	A	18.06	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1378|WARNING_TRANSCRIPT_NO_START_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:864266_864415|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1221G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.187-1053C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1221G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1221G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864482	.	C	T	69.64	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1210|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1053C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+1074G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1053C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1053C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864489	.	C	T	303.99	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1203|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1046C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+1067G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1046C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1046C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864490	rs55678698	C	T	1618.68	.	AC=47;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||1202|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-1045C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+1066G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-1045C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-1045C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864541	.	G	T	10.39	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>T|||||1151|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-994G>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+1015C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-994G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-994G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864562	.	T	C	98.84	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>C|||||1130|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-973T>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+994A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-973T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-973T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864615	rs9988193	G	A	2073.09	.	AC=70;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1077|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-920G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+941C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-920G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-920G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864621	.	G	A	42.82	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||1071|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-914G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+935C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-914G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-914G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864661	rs115613108	C	A	38.66	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>A|||||1031|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-874C>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+895G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-874C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-874C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864701	rs59772393	A	G	298.67	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||991|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-834A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+855T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-834A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-834A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864726	rs2340590	T	A	48703.52	.	AC=863;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3T>A|||||966|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-809T>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+830A>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-809T>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-809T>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864749	.	C	T	62.95	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||943|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-786C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+807G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-786C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-786C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864755	rs2340589	A	G	27909.52	.	AC=767;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||937|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-780A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+801T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-780A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-780A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864757	rs2340588	G	A	29260.64	.	AC=764;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||935|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-778G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+799C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-778G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-778G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864875	.	G	C	39.49	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>C|||||817|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-660G>C||||||,C|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+681C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-660G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-660G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864878	.	C	T	5.96	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||814|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-657C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+678G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-657C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-657C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864895	rs74047406	C	T	174.57	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||797|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-640C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+661G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-640C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-640C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864898	rs59168317	A	G	246.46	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3A>G|||||794|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-637A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+658T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-637A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-637A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	864938	rs78370858	G	A	47993.29	.	AC=673;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||754|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-597G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+618C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-597G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-597G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865028	.	G	A	55.83	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||664|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-507G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+528C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-507G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-507G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865219	rs75551395	G	A	6194.61	.	AC=128;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||473|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-316G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+337C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-316G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-316G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865261	rs114608936	G	A	358.26	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||431|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-274G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+295C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-274G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-274G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865367	rs75294478	G	T	1093.23	.	AC=51;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>T|||||325|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-168G>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+189C>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-168G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-168G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865438	rs79027658	C	T	273.18	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||254|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|2/13|c.73-97C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+118G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|2/6|c.73-97C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|2/4|c.73-97C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865544	.	C	T	45.69	.	AC=1;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/14|c.82C>T|p.Arg28Trp|165/2551|82/2046|28/681||,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/7|c.82C>T|p.Arg28Trp|171/626|82/537|28/178||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/5|c.82C>T|p.Arg28Trp|142/387|82/327|28/108||WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3C>T|||||148|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+12G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865545	.	G	A	14.44	.	AC=1;ANN=A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/14|c.83G>A|p.Arg28Gln|166/2551|83/2046|28/681||,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/7|c.83G>A|p.Arg28Gln|172/626|83/537|28/178||WARNING_TRANSCRIPT_NO_STOP_CODON,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/5|c.83G>A|p.Arg28Gln|143/387|83/327|28/108||WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||147|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/5|c.186+11C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON
1	865584	.	G	A	374.43	.	AC=16;ANN=A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/14|c.122G>A|p.Arg41Gln|205/2551|122/2046|41/681||,A|missense_variant|MODERATE|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/6|c.158C>T|p.Pro53Leu|158/336|158/336|53/111||WARNING_TRANSCRIPT_NO_STOP_CODON,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/7|c.122G>A|p.Arg41Gln|211/626|122/537|41/178||WARNING_TRANSCRIPT_NO_STOP_CODON,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/5|c.122G>A|p.Arg41Gln|182/387|122/327|41/108||WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||108|WARNING_TRANSCRIPT_NO_START_CODON
1	865628	rs41285790	G	A	24.97	.	AC=4;ANN=A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/14|c.166G>A|p.Gly56Ser|249/2551|166/2046|56/681||,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/7|c.166G>A|p.Gly56Ser|255/626|166/537|56/178||WARNING_TRANSCRIPT_NO_STOP_CODON,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/5|c.166G>A|p.Gly56Ser|226/387|166/327|56/108||WARNING_TRANSCRIPT_NO_STOP_CODON,A|synonymous_variant|LOW|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|4/6|c.114C>T|p.Thr38Thr|114/336|114/336|38/111||WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.-3G>A|||||64|WARNING_TRANSCRIPT_NO_START_CODON
1	865694	rs9988179	C	T	2816.12	.	AC=96;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/14|c.232C>T|p.His78Tyr|315/2551|232/2046|78/681||,T|missense_variant|MODERATE|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|3/6|c.53G>A|p.Cys18Tyr|53/336|53/336|18/111||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/7|c.232C>T|p.His78Tyr|321/626|232/537|78/178||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/5|c.232C>T|p.His78Tyr|292/387|232/327|78/108||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|1/12|c.1C>T|p.His1Tyr|3/2191|1/1767|1/588||WARNING_TRANSCRIPT_NO_START_CODON
1	865700	rs116730894	C	T	34.06	.	AC=4;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/14|c.238C>T|p.Arg80Cys|321/2551|238/2046|80/681||,T|missense_variant|MODERATE|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|3/6|c.47G>A|p.Arg16Gln|47/336|47/336|16/111||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/7|c.238C>T|p.Arg80Cys|327/626|238/537|80/178||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/5|c.238C>T|p.Arg80Cys|298/387|238/327|80/108||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|1/12|c.7C>T|p.Arg3Cys|9/2191|7/1767|3/588||WARNING_TRANSCRIPT_NO_START_CODON
1	865705	.	C	T	123.85	.	AC=2;ANN=T|missense_variant|MODERATE|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|3/6|c.42G>A|p.Met14Ile|42/336|42/336|14/111||WARNING_TRANSCRIPT_NO_STOP_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/14|c.243C>T|p.Ile81Ile|326/2551|243/2046|81/681||,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/7|c.243C>T|p.Ile81Ile|332/626|243/537|81/178||WARNING_TRANSCRIPT_NO_STOP_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/5|c.243C>T|p.Ile81Ile|303/387|243/327|81/108||WARNING_TRANSCRIPT_NO_STOP_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|1/12|c.12C>T|p.Ile4Ile|14/2191|12/1767|4/588||WARNING_TRANSCRIPT_NO_START_CODON
1	865738	.	A	G	71.09	.	AC=5;ANN=G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/13|c.254+22A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|2/5|c.28-19T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/6|c.254+22A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/4|c.254+22A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|1/11|c.23+22A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	865863	.	A	G	54.56	.	AC=1;ANN=G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/13|c.254+147A>G||||||,G|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|2/5|c.27+127T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/6|c.254+147A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/4|c.254+147A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|1/11|c.23+147A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	865902	.	C	T	46.18	.	AC=2;ANN=T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/13|c.254+186C>T||||||,T|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|2/5|c.27+88G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/6|c.254+186C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/4|c.254+186C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|1/11|c.23+186C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866319	rs9988021	G	A	36395.7	.	AC=698;ANN=A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|3/13|c.255-100G>A||||||,A|intron_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|1/5|c.20+107C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|3/6|c.255-100G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|3/4|c.255-100G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|1/11|c.24-100G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866422	.	C	T	67.06	.	AC=4;ANN=T|splice_region_variant&intron_variant|LOW|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding|1/5|c.20+4G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/14|c.258C>T|p.Val86Val|341/2551|258/2046|86/681||,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/7|c.258C>T|p.Val86Val|347/626|258/537|86/178||WARNING_TRANSCRIPT_NO_STOP_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/5|c.258C>T|p.Val86Val|318/387|258/327|86/108||WARNING_TRANSCRIPT_NO_STOP_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/12|c.27C>T|p.Val9Val|29/2191|27/1767|9/588||WARNING_TRANSCRIPT_NO_START_CODON
1	866517	.	C	G	83.77	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>C|||||72|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+48C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+48C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+48C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+48C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866528	.	C	T	26.35	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||83|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+59C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+59C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+59C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+59C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866558	.	G	A	13.85	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||113|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+89G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+89G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+89G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+89G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866662	.	C	G	25.02	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>C|||||217|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+193C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+193C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+193C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+193C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866731	rs116437026	G	C	588.63	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||286|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+262G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+262G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+262G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+262G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866822	.	A	T	187.03	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>A|||||377|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+353A>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+353A>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+353A>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+353A>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866881	rs115815685	G	A	5.06	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||436|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+412G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+412G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+412G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+412G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866893	rs2880024	T	C	33540.07	.	AC=522;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||448|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+424T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+424T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+424T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+424T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866906	rs28612797	G	A	6657.03	.	AC=95;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||461|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+437G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+437G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+437G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+437G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866914	.	C	T	13.59	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||469|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+445C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+445C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+445C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+445C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866920	rs2341361	A	G	69072.74	.	AC=988;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||475|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+451A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+451A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+451A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+451A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	866938	rs74047407	G	A	16338.29	.	AC=282;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||493|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+469G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+469G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+469G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+469G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867089	.	C	T	114.72	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||644|WARNING_TRANSCRIPT_NO_STOP_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867086_867235|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+620C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+620C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+620C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+620C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867151	rs79837947	G	A	271.87	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||706|WARNING_TRANSCRIPT_NO_STOP_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867086_867235|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+682G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+682G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+682G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+682G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867165	rs113954963	G	A	1659.17	.	AC=38;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||720|WARNING_TRANSCRIPT_NO_STOP_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867086_867235|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+696G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+696G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+696G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+696G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867291	.	G	C	10.25	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||846|WARNING_TRANSCRIPT_NO_STOP_CODON,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867246_867395|||||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+822G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+822G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+822G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+822G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867298	rs113982713	G	A	123.43	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||853|WARNING_TRANSCRIPT_NO_STOP_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867246_867395|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+829G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+829G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+829G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+829G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867320	.	T	C	57.15	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||875|WARNING_TRANSCRIPT_NO_STOP_CODON,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867246_867395|||||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+851T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+851T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+851T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+851T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867370	rs111442183	T	C	2341.4	.	AC=83;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||925|WARNING_TRANSCRIPT_NO_STOP_CODON,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867246_867395|||||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+901T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+901T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+901T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+901T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867382	rs74047408	C	T	9.47	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||937|WARNING_TRANSCRIPT_NO_STOP_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:867246_867395|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+913C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+913C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+913C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+913C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867403	.	C	T	30.97	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||958|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+934C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+934C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+934C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+934C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867404	rs76326394	G	A	374.19	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||959|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+935G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+935G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+935G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+935G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867418	rs111274533	C	T	5567.25	.	AC=97;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||973|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+949C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+949C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+949C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+949C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867438	.	A	G	5.44	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||993|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+969A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+969A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+969A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+969A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867442	rs74047409	C	T	1068.85	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||997|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+973C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+973C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+973C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+973C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867552	rs79738099	T	G	435.65	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>C|||||1107|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1083T>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1083T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1083T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1083T>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867554	.	A	G	94.96	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||1109|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1085A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1085A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1085A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1085A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867584	rs2341360	A	T	66209.17	.	AC=1031;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>A|||||1139|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1115A>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1115A>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1115A>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1115A>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867635	rs76964081	C	T	11415.46	.	AC=209;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1190|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1166C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1166C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1166C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1166C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867640	.	T	C	9.04	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||1195|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1171T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1171T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1171T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1171T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867663	.	C	T	376.31	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1218|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1194C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1194C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1194C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1194C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867720	rs76193915	C	T	49.29	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1275|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1251C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1251C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1251C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1251C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	867857	.	G	A	79.43	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||1412|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1388G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1388G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1388G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1388G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868096	rs2001730	T	C	10402.38	.	AC=168;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||1651|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1627T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1627T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1627T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1627T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868112	rs115640463	C	T	472.26	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1667|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1643C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1643C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1643C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1643C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868113	rs2001729	G	A	8110.05	.	AC=151;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||1668|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1644G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1644G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1644G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1644G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868329	rs2341359	A	C	38084.98	.	AC=814;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>G|||||1884|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1860A>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1860A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1860A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1860A>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868343	.	C	T	164.35	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1898|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1874C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1874C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1874C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1874C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868356	rs7418554	C	T	1033.04	.	AC=36;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1911|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1887C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1887C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1887C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1887C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868404	rs13302914	C	T	27220.28	.	AC=656;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1959|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1935C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1935C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1935C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1935C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868416	.	C	T	11.2	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1971|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1947C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1947C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1947C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1947C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868418	rs28546443	C	T	9186.27	.	AC=227;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||1973|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+1949C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+1949C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+1949C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+1949C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868533	.	G	A	32.54	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||2088|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+2064G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+2064G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+2064G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+2064G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868570	.	C	T	109.12	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2125|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+2101C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+2101C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+2101C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+2101C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868576	.	G	A	56.64	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||2131|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+2107G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+2107G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+2107G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+2107G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868683	.	C	T	231.85	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2238|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+2214C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+2214C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+2214C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+2214C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868781	rs111966739	A	C	256.53	.	AC=19;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>G|||||2336|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+2312A>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+2312A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+2312A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+2312A>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868791	rs13303003	C	T	23055.77	.	AC=637;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2346|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.305+2322C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.305+2322C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.305+2322C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.74+2322C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868840	rs28532704	C	T	1962.21	.	AC=70;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2395|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2312C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2312C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2312C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2312C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868861	rs111819742	C	T	1281.29	.	AC=50;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2416|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2291C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2291C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2291C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2291C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868891	rs13303066	A	G	31756.41	.	AC=779;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||2446|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2261A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2261A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2261A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2261A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868955	.	G	A	11.74	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||2510|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2197G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2197G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2197G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2197G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	868981	rs13303037	C	T	22324.93	.	AC=654;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2536|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2171C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2171C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2171C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2171C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869033	rs116296342	C	T	1207.43	.	AC=53;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2588|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2119C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2119C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2119C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2119C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869071	rs115552829	G	A	713.71	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||2626|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2081G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2081G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2081G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2081G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869103	.	G	A	50.55	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||2658|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-2049G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-2049G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-2049G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-2049G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869155	.	G	A	6.28	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||2710|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1997G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1997G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1997G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1997G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869177	.	T	C	9.75	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||2732|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1975T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1975T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1975T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1975T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869249	rs115526822	T	C	1145.89	.	AC=66;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||2804|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1903T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1903T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1903T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1903T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869303	rs113171913	C	T	7899.02	.	AC=158;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2858|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1849C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1849C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1849C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1849C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869323	rs13303207	T	C	28889.54	.	AC=668;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||2878|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1829T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1829T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1829T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1829T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869333	.	C	T	14.18	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||2888|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1819C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1819C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1819C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1819C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869334	.	G	A	16.95	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||2889|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1818G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1818G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1818G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1818G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869360	.	A	G	23.85	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||2915|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1792A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1792A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1792A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1792A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869369	rs13303328	G	T	9629.17	.	AC=338;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||2924|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1783G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1783G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1783G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1783G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869373	rs13303330	G	C	8351.94	.	AC=326;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||2928|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1779G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1779G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1779G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1779G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869388	.	A	G	19.46	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||2943|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1764A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1764A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1764A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1764A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869401	rs13303353	G	C	1664.77	.	AC=89;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||2956|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1751G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1751G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1751G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1751G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869441	rs13302908	G	T	45.18	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||2996|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1711G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1711G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1711G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1711G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869444	.	A	G	76.19	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||2999|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1708A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1708A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1708A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1708A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869453	.	G	T	62.06	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3008|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1699G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1699G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1699G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1699G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869457	.	G	C	59.45	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||3012|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1695G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1695G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1695G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1695G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869472	rs13303006	A	G	30.06	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||3027|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1680A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1680A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1680A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1680A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869477	.	A	G	40.24	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||3032|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1675A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1675A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1675A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1675A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869481	.	G	T	125.36	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3036|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1671G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1671G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1671G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1671G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869485	rs13303205	C	G	8.42	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>C|||||3040|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1667C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1667C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1667C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1667C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869500	.	A	G	25.04	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||3055|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1652A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1652A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1652A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1652A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869505	.	A	G	23.37	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||3060|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1647A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1647A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1647A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1647A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869525	.	G	T	92.62	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3080|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1627G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1627G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1627G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1627G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869528	.	A	G	41.43	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>C|||||3083|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1624A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1624A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1624A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1624A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869593	.	G	T	2560.37	.	AC=138;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3148|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1559G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1559G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1559G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1559G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869621	.	G	T	184.82	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3176|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1531G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1531G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1531G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1531G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869665	.	G	T	448.44	.	AC=31;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3220|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4990|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1487G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1487G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1487G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1487G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869897	.	G	A	29.14	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3452|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4758|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1255G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1255G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1255G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1255G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869920	.	G	A	98.24	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3475|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4735|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1232G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1232G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1232G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1232G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869948	.	G	A	258.64	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3503|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4707|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1204G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1204G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1204G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1204G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	869957	.	T	G	9.64	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>C|||||3512|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>G|||||4698|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1195T>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1195T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1195T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1195T>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870060	.	G	A	92.13	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3615|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4595|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1092G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1092G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1092G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1092G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870069	.	G	T	98.62	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3624|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4586|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1083G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1083G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1083G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1083G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870116	.	G	A	24.6	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3671|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4539|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1036G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1036G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1036G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1036G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870125	.	G	T	36.77	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3680|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4530|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1027G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1027G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1027G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1027G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870129	.	G	C	357.53	.	AC=22;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||3684|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>C|||||4526|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1023G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1023G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1023G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1023G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870141	.	G	T	103.71	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3696|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4514|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-1011G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-1011G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-1011G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-1011G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870153	.	G	T	283.34	.	AC=26;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3708|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4502|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-999G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-999G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-999G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-999G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870157	.	G	C	501.29	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||3712|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>C|||||4498|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-995G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-995G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-995G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-995G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870169	.	G	T	542.87	.	AC=40;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3724|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4486|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-983G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-983G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-983G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-983G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870181	.	G	T	19.96	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3736|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4474|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-971G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-971G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-971G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-971G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870197	.	G	T	27.75	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3752|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4458|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-955G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-955G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-955G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-955G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870200	rs28630891	G	A	186.58	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3755|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4455|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-952G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-952G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-952G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-952G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870209	rs28446377	G	T	128.39	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3764|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4446|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-943G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-943G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-943G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-943G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870228	rs28633915	G	A	410.46	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3783|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4427|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-924G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-924G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-924G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-924G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870253	.	G	T	525.83	.	AC=40;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3808|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4402|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-899G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-899G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-899G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-899G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870256	rs28491190	G	A	792.54	.	AC=54;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3811|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4399|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-896G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-896G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-896G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-896G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870265	.	G	T	17.81	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3820|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4390|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-887G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-887G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-887G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-887G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870281	rs28705257	G	T	314.87	.	AC=24;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3836|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4374|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-871G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-871G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-871G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-871G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870284	rs28621383	G	A	678.84	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3839|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4371|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-868G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-868G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-868G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-868G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870293	.	G	T	77.22	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3848|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4362|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-859G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-859G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-859G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-859G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870297	.	G	C	32.72	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||3852|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>C|||||4358|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-855G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-855G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-855G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-855G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870312	rs71509447	G	A	105.37	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3867|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4343|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-840G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-840G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-840G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-840G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870317	rs28451560	G	A	4420.38	.	AC=202;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3872|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4338|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-835G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-835G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-835G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-835G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870321	.	G	T	696.44	.	AC=47;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||3876|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||4334|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-831G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-831G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-831G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-831G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870356	.	G	A	150.49	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3911|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4299|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-796G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-796G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-796G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-796G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870370	.	G	A	56.08	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||3925|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4285|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-782G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-782G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-782G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-782G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870460	rs114794524	G	C	120.14	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||4015|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>C|||||4195|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-692G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-692G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-692G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-692G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870479	rs115596025	C	T	46.58	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4034|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||4176|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-673C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-673C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-673C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-673C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870528	.	G	A	15.41	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||4083|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4127|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-624G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-624G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-624G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-624G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870637	.	C	T	41.59	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4192|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||4018|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-515C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-515C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-515C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-515C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870640	.	T	G	137.25	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>C|||||4195|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>G|||||4015|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-512T>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-512T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-512T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-512T>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870641	.	G	A	23.07	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||4196|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||4014|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-511G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-511G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-511G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-511G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870645	rs28576697	T	C	9905.05	.	AC=210;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||4200|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>C|||||4010|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-507T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-507T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-507T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-507T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870651	rs76294260	C	T	2998.0	.	AC=105;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4206|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||4004|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-501C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-501C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-501C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-501C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870659	.	G	T	44.58	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||4214|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||3996|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-493G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-493G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-493G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-493G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870706	.	G	A	57.53	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||4261|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||3949|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-446G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-446G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-446G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-446G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870754	rs74047411	C	T	1164.7	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4309|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3901|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4972|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-398C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-398C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-398C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-398C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870766	rs77579483	C	T	6955.48	.	AC=136;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4321|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3889|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4960|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-386C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-386C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-386C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-386C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870802	.	C	T	86.81	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4357|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3853|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4924|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-350C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-350C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-350C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-350C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870811	rs56024075	G	A	251.12	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||4366|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||3844|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||4915|,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-341G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-341G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-341G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-341G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870861	rs76120873	C	T	68.68	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4416|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3794|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4865|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-291C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-291C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-291C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-291C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870903	rs13303094	T	C	30124.59	.	AC=657;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1A>G|||||4458|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>C|||||3752|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>C|||||4823|,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-249T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-249T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-249T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-249T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870926	.	G	A	218.82	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||4481|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||3729|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||4800|,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-226G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-226G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-226G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-226G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	870978	rs59847387	G	A	9.47	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>T|||||4533|WARNING_TRANSCRIPT_NO_STOP_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||3677|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||4748|,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-174G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-174G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-174G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-174G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871010	.	A	C	38.53	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1T>G|||||4565|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3A>C|||||3645|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1A>C|||||4716|,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-142A>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-142A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-142A>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-142A>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871129	.	C	T	21.99	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4684|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3526|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4597|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|4/13|c.306-23C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|4/6|c.306-23C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding|4/4|c.306-23C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|2/11|c.75-23C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871215	rs28419423	C	G	848.33	.	AC=57;ANN=G|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/14|c.369C>G|p.Pro123Pro|452/2551|369/2046|123/681||,G|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/7|c.369C>G|p.Pro123Pro|458/626|369/537|123/178||WARNING_TRANSCRIPT_NO_STOP_CODON,G|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/12|c.138C>G|p.Pro46Pro|140/2191|138/1767|46/588||WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>C|||||4770|WARNING_TRANSCRIPT_NO_STOP_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>G|||||3440|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>G|||||4511|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>G|||||42|WARNING_TRANSCRIPT_NO_STOP_CODON
1	871229	.	G	C	5.71	.	AC=1;ANN=C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/14|c.383G>C|p.Arg128Pro|466/2551|383/2046|128/681||,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/7|c.383G>C|p.Arg128Pro|472/626|383/537|128/178||WARNING_TRANSCRIPT_NO_STOP_CODON,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/12|c.152G>C|p.Arg51Pro|154/2191|152/1767|51/588||WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>G|||||4784|WARNING_TRANSCRIPT_NO_STOP_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>C|||||3426|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>C|||||4497|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>C|||||56|WARNING_TRANSCRIPT_NO_STOP_CODON
1	871239	.	C	T	18.81	.	AC=2;ANN=T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/14|c.393C>T|p.Phe131Phe|476/2551|393/2046|131/681||,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/7|c.393C>T|p.Phe131Phe|482/626|393/537|131/178||WARNING_TRANSCRIPT_NO_STOP_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/12|c.162C>T|p.Phe54Phe|164/2191|162/1767|54/588||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4794|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3416|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4487|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||66|WARNING_TRANSCRIPT_NO_STOP_CODON
1	871334	rs4072383	G	T	17504.08	.	AC=440;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1C>A|||||4889|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||3321|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>T|||||4392|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>T|||||161|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+58G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+58G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+58G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871406	rs28606613	C	T	187.18	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AL645608.1|ENSG00000268179|transcript|ENST00000598827|protein_coding||c.-1G>A|||||4961|WARNING_TRANSCRIPT_NO_STOP_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3249|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4320|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||233|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+130C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+130C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+130C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871513	rs114994266	C	T	455.3	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3142|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4213|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||4943|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||340|WARNING_TRANSCRIPT_NO_STOP_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:871426_871575|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+237C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+237C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+237C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871597	.	C	T	406.27	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||3058|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||4129|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||4859|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||424|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+321C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+321C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+321C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871644	rs4995348	A	G	151.79	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3A>G|||||3011|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1A>G|||||4082|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1A>G|||||4812|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387A>G|||||471|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+368A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+368A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+368A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871683	rs4504834	G	A	375.23	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||2972|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||4043|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||4773|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||510|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+407G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+407G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+407G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871731	.	C	T	32.95	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||2924|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||3995|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||4725|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||558|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+455C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+455C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+455C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871761	rs13302927	A	G	66.18	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3A>G|||||2894|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1A>G|||||3965|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1A>G|||||4695|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387A>G|||||588|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+485A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+485A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+485A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871796	.	C	G	16.73	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>G|||||2859|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>G|||||3930|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>G|||||4660|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>G|||||623|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+520C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+520C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+520C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871800	rs7520955	G	A	605.68	.	AC=32;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||2855|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||3926|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||4656|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||627|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+524G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+524G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+524G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871804	.	G	A	602.45	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||2851|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||3922|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||4652|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||631|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+528G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+528G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+528G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871814	rs115622116	G	A	66.65	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||2841|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||3912|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||4642|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||641|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+538G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+538G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+538G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871824	rs7552704	T	C	2309.15	.	AC=104;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>C|||||2831|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>C|||||3902|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>C|||||4632|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>C|||||651|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+548T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+548T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+548T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871836	.	G	T	97.32	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||2819|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>T|||||3890|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>T|||||4620|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>T|||||663|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+560G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+560G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+560G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871853	rs117900791	G	A	137.72	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||2802|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||3873|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||4603|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||680|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+577G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+577G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+577G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871893	rs112344117	C	T	740.08	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||2762|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||3833|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||4563|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||720|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+617C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+617C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+617C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	871906	rs116699812	T	C	41.13	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>C|||||2749|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>C|||||3820|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>C|||||4550|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>C|||||733|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+630T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+630T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+630T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872087	rs78308511	T	C	1130.58	.	AC=62;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>C|||||2568|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>C|||||3639|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>C|||||4369|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>C|||||914|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+811T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+811T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+811T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872091	rs77614634	T	G	1093.14	.	AC=60;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>G|||||2564|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>G|||||3635|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>G|||||4365|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>G|||||918|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+815T>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+815T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+815T>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872115	rs117001843	C	T	247.39	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||2540|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||3611|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||4341|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||942|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+839C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+839C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+839C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872168	rs60226968	T	C	138.45	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>C|||||2487|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>C|||||3558|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>C|||||4288|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>C|||||995|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+892T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+892T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+892T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872176	.	C	T	107.58	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||2479|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||3550|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||4280|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||1003|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+900C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+900C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+900C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872189	.	T	A	39.56	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>A|||||2466|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>A|||||3537|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>A|||||4267|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>A|||||1016|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+913T>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+913T>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+913T>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872198	.	G	T	37.67	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||2457|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>T|||||3528|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>T|||||4258|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>T|||||1025|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+922G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+922G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+922G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872236	.	G	A	18.16	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||2419|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||3490|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||4220|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||1063|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+960G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+960G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+960G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872352	rs1806780	G	C	12340.12	.	AC=258;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>C|||||2303|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>C|||||3374|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>C|||||4104|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>C|||||1179|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+1076G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+1076G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+1076G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872390	rs114331633	G	T	114.23	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||2265|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>T|||||3336|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>T|||||4066|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>T|||||1217|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+1114G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+1114G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+1114G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872467	.	C	G	158.56	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>G|||||2188|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>G|||||3259|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>G|||||3989|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>G|||||1294|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+1191C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+1191C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+1191C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872564	.	C	T	18.7	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||2091|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||3162|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||3892|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||4919|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||4982|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||1391|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+1288C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+1288C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+1288C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872616	rs114890122	G	A	511.48	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||2039|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||3110|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||3840|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||4867|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||4930|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||1443|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+1340G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+1340G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+1340G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872687	rs76166080	C	G	162.43	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>G|||||1968|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>G|||||3039|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>G|||||3769|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>G|||||4796|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>G|||||4859|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>G|||||1514|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.430+1411C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.430+1411C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.199+1411C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	872952	rs76723341	C	T	2669.39	.	AC=109;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||1703|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||2774|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||3504|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||4531|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||4594|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||1779|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-1468C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-1468C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-1468C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873215	.	C	T	7.82	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||1440|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||2511|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||3241|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||4268|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||4331|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||2042|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-1205C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-1205C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-1205C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873240	.	C	T	128.27	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||1415|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||2486|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||3216|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||4243|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||4306|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||2067|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-1180C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-1180C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-1180C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873280	rs28579246	A	G	172.94	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3A>G|||||1375|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1A>G|||||2446|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1A>G|||||3176|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1A>G|||||4203|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1A>G|||||4266|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387A>G|||||2107|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-1140A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-1140A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-1140A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873321	.	C	T	70.53	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||1334|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||2405|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||3135|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||4162|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||4225|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||2148|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-1099C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-1099C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-1099C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873337	.	G	C	41.42	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>C|||||1318|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>C|||||2389|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>C|||||3119|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>C|||||4146|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>C|||||4209|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>C|||||2164|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-1083G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-1083G>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-1083G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873394	rs1110051	A	G	9253.25	.	AC=215;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3A>G|||||1261|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1A>G|||||2332|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1A>G|||||3062|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1A>G|||||4089|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1A>G|||||4152|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387A>G|||||2221|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-1026A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-1026A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-1026A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873421	.	G	A	30.16	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||1234|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||2305|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||3035|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||4062|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||4125|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||2248|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-999G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-999G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-999G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873462	rs116804576	G	T	511.13	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||1193|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>T|||||2264|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>T|||||2994|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>T|||||4021|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>T|||||4084|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>T|||||2289|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-958G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-958G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-958G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873486	.	G	A	55.51	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||1169|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||2240|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2970|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3997|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||4060|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||2313|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-934G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-934G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-934G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873558	rs1110052	G	T	33792.98	.	AC=603;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||1097|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>T|||||2168|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>T|||||2898|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>T|||||3925|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>T|||||3988|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>T|||||2385|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-862G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-862G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-862G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873753	.	T	G	40.67	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>G|||||902|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>G|||||1973|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>G|||||2703|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1T>G|||||3730|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1T>G|||||3793|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>G|||||2580|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-667T>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-667T>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-667T>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873858	.	C	T	8.51	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||797|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||1868|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||2598|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||3625|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||3688|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||2685|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-562C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-562C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-562C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873859	rs28525584	G	T	8190.92	.	AC=153;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>T|||||796|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>T|||||1867|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>T|||||2597|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>T|||||3624|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>T|||||3687|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>T|||||2686|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-561G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-561G>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-561G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873883	rs72902592	G	A	24.82	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||772|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1843|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2573|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3600|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3663|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||2710|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-537G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-537G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-537G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873935	rs79986823	G	A	109.9	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||720|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1791|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2521|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3548|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3611|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||2762|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-485G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-485G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-485G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873983	.	G	A	29.07	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||672|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1743|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2473|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3500|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3563|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||2810|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-437G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-437G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-437G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	873985	rs79067344	C	T	483.83	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||670|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||1741|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||2471|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||3498|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||3561|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||2812|WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-435C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-435C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-435C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874029	.	A	G	75.29	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3A>G|||||626|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1A>G|||||1697|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1A>G|||||2427|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1A>G|||||3454|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1A>G|||||3517|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387A>G|||||2856|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-391A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-391A>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-391A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874034	rs75790500	G	A	5543.31	.	AC=121;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||621|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1692|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2422|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3449|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3512|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||2861|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-386G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-386G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-386G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874061	.	G	A	7.42	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||594|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1665|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2395|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3422|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3485|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||2888|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-359G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-359G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-359G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874073	rs28450942	C	G	2997.88	.	AC=95;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>G|||||582|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>G|||||1653|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>G|||||2383|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>G|||||3410|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>G|||||3473|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>G|||||2900|WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-347C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-347C>G||||||WARNING_TRANSCRIPT_NO_STOP_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-347C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874271	.	G	A	17.94	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||384|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1455|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2185|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3212|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3275|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||3098|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-149G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-149G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-149G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874314	rs117605689	G	A	427.57	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||341|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1412|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2142|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3169|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3232|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||3141|WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-106G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-106G>A||||||WARNING_TRANSCRIPT_NO_STOP_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-106G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874329	rs75871540	T	C	225.65	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3T>C|||||326|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1T>C|||||1397|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>C|||||2127|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1T>C|||||3154|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1T>C|||||3217|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>C|||||3156|WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-91T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-91T>C||||||WARNING_TRANSCRIPT_NO_STOP_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-91T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874415	rs74047412	C	T	34.47	.	AC=1;ANN=T|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|5/13|c.431-5C>T||||||,T|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|5/6|c.431-5C>T||||||WARNING_TRANSCRIPT_NO_STOP_CODON,T|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|3/11|c.200-5C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||240|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||1311|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||2041|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||3068|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||3131|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||3242|WARNING_TRANSCRIPT_NO_STOP_CODON
1	874446	.	C	T	9.5	.	AC=1;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|6/14|c.457C>T|p.Arg153Cys|540/2551|457/2046|153/681||,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|6/7|c.457C>T|p.Arg153Cys|546/626|457/537|153/178||WARNING_TRANSCRIPT_NO_STOP_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|4/12|c.226C>T|p.Arg76Cys|228/2191|226/1767|76/588||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3C>T|||||209|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||1280|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||2010|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||3037|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||3100|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||3273|WARNING_TRANSCRIPT_NO_STOP_CODON
1	874456	.	G	A	8.72	.	AC=1;ANN=A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|6/14|c.467G>A|p.Arg156His|550/2551|467/2046|156/681||,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|6/7|c.467G>A|p.Arg156His|556/626|467/537|156/178||WARNING_TRANSCRIPT_NO_STOP_CODON,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|4/12|c.236G>A|p.Arg79His|238/2191|236/1767|79/588||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.-3G>A|||||199|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1270|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||2000|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||3027|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||3090|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||3283|WARNING_TRANSCRIPT_NO_STOP_CODON
1	874665	rs74047413	G	A	460.92	.	AC=20;ANN=A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/14|c.531G>A|p.Leu177Leu|614/2551|531/2046|177/681||,A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding|7/7|c.531G>A|p.Leu177Leu|620/626|531/537|177/178||WARNING_TRANSCRIPT_NO_STOP_CODON,A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/12|c.300G>A|p.Leu100Leu|302/2191|300/1767|100/588||WARNING_TRANSCRIPT_NO_START_CODON,A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/7|c.9G>A|p.Leu3Leu|11/1731|9/1623|3/540||WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||1061|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||1791|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||2818|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||2881|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||4919|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||3492|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||4919|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||4920|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:874606_874755|||||||||
1	874734	.	C	T	111.37	.	AC=2;ANN=T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/14|c.600C>T|p.Ser200Ser|683/2551|600/2046|200/681||,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/12|c.369C>T|p.Ser123Ser|371/2191|369/1767|123/588||WARNING_TRANSCRIPT_NO_START_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/7|c.78C>T|p.Ser26Ser|80/1731|78/1623|26/540||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||992|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||1722|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||2749|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||2812|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||4850|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||63|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||3561|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||4850|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||4851|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:874606_874755|||||||||
1	874762	.	C	T	236.91	.	AC=6;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/14|c.628C>T|p.Arg210Cys|711/2551|628/2046|210/681||,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/12|c.397C>T|p.Arg133Cys|399/2191|397/1767|133/588||WARNING_TRANSCRIPT_NO_START_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/7|c.106C>T|p.Arg36Cys|108/1731|106/1623|36/540||WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||964|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||1694|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||2721|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||2784|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||4822|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||91|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||3589|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||4822|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||4823|
1	874896	.	C	T	53.19	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||830|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||1560|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||2587|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||2650|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||4688|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||225|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||3723|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||4688|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||4689|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.706+56C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.427+104C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.184+56C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	874927	rs2340591	A	G	1939.37	.	AC=81;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1A>G|||||799|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1A>G|||||1529|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1A>G|||||2556|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1A>G|||||2619|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300T>C|||||4657|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626A>G|||||256|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387A>G|||||3754|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611T>C|||||4657|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201T>C|||||4658|,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.706+87A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.427+135A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.184+87A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	875092	.	G	A	69.46	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1G>A|||||634|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||1364|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||2391|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||2454|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||4492|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||421|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387G>A|||||3919|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||4492|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||4493|,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.706+252G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.427+300G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.184+252G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	875636	.	C	T	54.56	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>T|||||90|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||820|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||1847|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||1910|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||3948|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||965|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||4463|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||3948|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||3949|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:875586_875735|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.706+796C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.427+844C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.184+796C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	875643	rs7411115	C	G	2535.88	.	AC=141;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.-1C>G|||||83|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>G|||||813|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>G|||||1840|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>G|||||1903|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>C|||||3941|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>G|||||972|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>G|||||4470|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>C|||||3941|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>C|||||3942|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:875586_875735|||||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.706+803C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.427+851C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.184+803C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	875770	rs4970379	A	G	4653.2	.	AC=180;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1A>G|||||686|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1A>G|||||1713|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1A>G|||||1776|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300T>C|||||3814|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626A>G|||||1099|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387A>G|||||4597|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611T>C|||||3814|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201T>C|||||3815|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149T>C|||||4929|,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-754A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-754A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-754A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/3|n.45A>G||||||
1	875871	.	T	G	69.79	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>G|||||585|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1T>G|||||1612|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1T>G|||||1675|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300A>C|||||3713|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626T>G|||||1200|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>G|||||4698|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611A>C|||||3713|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201A>C|||||3714|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149A>C|||||4828|,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-653T>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-653T>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-653T>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.117+29T>G||||||
1	875985	rs113591768	T	C	35.99	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1T>C|||||471|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1T>C|||||1498|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1T>C|||||1561|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300A>G|||||3599|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626T>C|||||1314|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387T>C|||||4812|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611A>G|||||3599|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201A>G|||||3600|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149A>G|||||4714|,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-539T>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-539T>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-539T>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.117+143T>C||||||
1	876067	.	C	T	1487.16	.	AC=54;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||389|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||1416|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||1479|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||3517|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||1396|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||4894|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||3517|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||3518|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||4632|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-457C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-457C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-457C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.117+225C>T||||||
1	876172	.	C	T	64.82	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||284|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||1311|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||1374|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||3412|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||1501|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000437963|protein_coding||c.*387C>T|||||4999|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||3412|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||3413|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||4527|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-352C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-352C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-352C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.117+330C>T||||||
1	876200	rs71628924	G	C	350.29	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>C|||||256|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>C|||||1283|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>C|||||1346|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||3384|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||1529|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||3384|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||3385|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||4499|,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-324G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-324G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-324G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.118-324G>C||||||
1	876280	.	C	T	35.22	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>T|||||176|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||1203|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||1266|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||3304|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||1609|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||3304|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||3305|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||4419|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:876266_876415|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-244C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-244C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-244C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.118-244C>T||||||
1	876350	.	C	G	14.24	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1C>G|||||106|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>G|||||1133|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>G|||||1196|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>C|||||3234|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>G|||||1679|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>C|||||3234|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>C|||||3235|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>C|||||4349|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:876266_876415|||||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-174C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-174C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-174C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.118-174C>G||||||
1	876393	rs112260347	G	A	264.01	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.-1G>A|||||63|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||1090|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||1153|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||3191|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||1722|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||3191|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||3192|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||4306|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:876266_876415|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-131G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-131G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-131G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.118-131G>A||||||
1	876484	rs118109273	C	T	320.05	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1C>T|||||999|,T|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1C>T|||||1062|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||3100|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||1813|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||3100|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||3101|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||4215|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-40C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-40C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-40C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.118-40C>T||||||,T|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|1/4|n.29C>T||||||
1	876499	rs4372192	A	G	30741.58	.	AC=696;ANN=G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1A>G|||||984|,G|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1A>G|||||1047|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300T>C|||||3085|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626A>G|||||1828|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611T>C|||||3085|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201T>C|||||3086|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149T>C|||||4200|,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|7/13|c.707-25A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|5/11|c.428-25A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|1/6|c.185-25A>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|1/2|n.118-25A>G||||||,G|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|1/4|n.44A>G||||||
1	876826	.	G	A	64.0	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||657|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||720|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||2758|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||2155|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||2758|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||2759|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||3873|,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|8/13|c.869+140G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|6/11|c.590+140G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|2/6|c.347+140G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|2/2|n.280+140G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|1/3|n.231+140G>A||||||
1	876908	rs112520258	G	A	187.12	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||575|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||638|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||2676|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||2237|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||2676|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||2677|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||3791|,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|8/13|c.869+222G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|6/11|c.590+222G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|2/6|c.347+222G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|2/2|n.280+222G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|1/3|n.231+222G>A||||||
1	876949	rs72902600	G	C	622.79	.	AC=41;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>C|||||534|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>C|||||597|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||2635|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||2278|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||2635|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||2636|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||3750|,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|8/13|c.869+263G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|6/11|c.590+263G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|2/6|c.347+263G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|2/2|n.280+263G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|1/3|n.231+263G>C||||||
1	877147	rs114982608	G	A	1196.56	.	AC=62;ANN=A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>A|||||336|,A|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>A|||||399|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||2437|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||2476|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||2437|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||2438|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||3552|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:877026_877175|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|8/13|c.870-369G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|6/11|c.591-369G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|2/6|c.348-369G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|2/2|n.281-369G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|1/3|n.232-369G>A||||||
1	877363	.	G	C	24.35	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.-1G>C|||||120|,C|upstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.-1G>C|||||183|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||2221|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||2692|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||2221|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||2222|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||3336|,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|8/13|c.870-153G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|6/11|c.591-153G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|2/6|c.348-153G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript|2/2|n.281-153G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|1/3|n.232-153G>C||||||
1	877715	rs6605066	C	G	7258.64	.	AC=295;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>C|||||1869|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>G|||||3044|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>G|||||162|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>C|||||1869|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>C|||||1870|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>C|||||2984|,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|9/13|c.986-75C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|7/11|c.707-75C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|3/6|c.464-75C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|2/3|n.348-75C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron|1/1|n.150-75C>G||||||,G|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron|1/2|n.170C>G||||||
1	877782	rs79037098	C	G	232.3	.	AC=20;ANN=G|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|9/13|c.986-8C>G||||||,G|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|7/11|c.707-8C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|3/6|c.464-8C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|2/3|n.348-8C>G||||||,G|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron|1/1|n.150-8C>G||||||,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>C|||||1802|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>G|||||3111|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>G|||||229|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>C|||||1802|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>C|||||1803|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>C|||||2917|,G|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron|1/2|n.237C>G||||||
1	877831	rs6672356	T	C	9383.7	.	AC=326;ANN=C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|10/14|c.1027T>C|p.Trp343Arg|1110/2551|1027/2046|343/681||,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|8/12|c.748T>C|p.Trp250Arg|750/2191|748/1767|250/588||WARNING_TRANSCRIPT_NO_START_CODON,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|4/7|c.505T>C|p.Trp169Arg|507/1731|505/1623|169/540||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300A>G|||||1753|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626T>C|||||3160|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>C|||||278|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611A>G|||||1753|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201A>G|||||1754|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149A>G|||||2868|,C|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|3/4|n.389T>C||||||,C|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron|2/2|n.191T>C||||||,C|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron|1/2|n.286T>C||||||
1	878314	.	G	C	857.89	.	AC=44;ANN=C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/14|c.1440G>C|p.Gly480Gly|1523/2551|1440/2046|480/681||,C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/12|c.1161G>C|p.Gly387Gly|1163/2191|1161/1767|387/588||WARNING_TRANSCRIPT_NO_START_CODON,C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/7|c.918G>C|p.Gly306Gly|920/1731|918/1623|306/540||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||1270|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||3643|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>C|||||761|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>C|||||132|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>C|||||42|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||1270|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||1271|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||2385|,C|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|4/4|n.802G>C||||||
1	878325	rs114478480	C	T	384.98	.	AC=16;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/14|c.1451C>T|p.Pro484Leu|1534/2551|1451/2046|484/681||,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/12|c.1172C>T|p.Pro391Leu|1174/2191|1172/1767|391/588||WARNING_TRANSCRIPT_NO_START_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/7|c.929C>T|p.Pro310Leu|931/1731|929/1623|310/540||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||1259|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||3654|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||772|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||143|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||53|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||1259|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||1260|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||2374|,T|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|4/4|n.813C>T||||||
1	878331	.	C	T	183.29	.	AC=9;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/14|c.1457C>T|p.Pro486Leu|1540/2551|1457/2046|486/681||,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/12|c.1178C>T|p.Pro393Leu|1180/2191|1178/1767|393/588||WARNING_TRANSCRIPT_NO_START_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/7|c.935C>T|p.Pro312Leu|937/1731|935/1623|312/540||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||1253|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||3660|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||778|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||149|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||59|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||1253|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||1254|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||2368|,T|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|4/4|n.819C>T||||||
1	878345	.	G	C	15.35	.	AC=1;ANN=C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/14|c.1471G>C|p.Ala491Pro|1554/2551|1471/2046|491/681||,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/12|c.1192G>C|p.Ala398Pro|1194/2191|1192/1767|398/588||WARNING_TRANSCRIPT_NO_START_CODON,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/7|c.949G>C|p.Ala317Pro|951/1731|949/1623|317/540||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||1239|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||3674|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>C|||||792|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>C|||||163|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>C|||||73|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||1239|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||1240|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||2354|,C|non_coding_exon_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron|4/4|n.833G>C||||||
1	878408	.	C	T	6.99	.	AC=1;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/14|c.1534C>T|p.Pro512Ser|1617/2551|1534/2046|512/681||,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/12|c.1255C>T|p.Pro419Ser|1257/2191|1255/1767|419/588||WARNING_TRANSCRIPT_NO_START_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/7|c.1012C>T|p.Pro338Ser|1014/1731|1012/1623|338/540||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||1176|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||3737|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||855|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||34|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||226|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||136|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||1176|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||1177|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||2291|
1	878409	.	C	T	35.94	.	AC=1;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/14|c.1535C>T|p.Pro512Leu|1618/2551|1535/2046|512/681||,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/12|c.1256C>T|p.Pro419Leu|1258/2191|1256/1767|419/588||WARNING_TRANSCRIPT_NO_START_CODON,T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/7|c.1013C>T|p.Pro338Leu|1015/1731|1013/1623|338/540||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||1175|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||3738|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||856|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||35|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||227|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||137|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||1175|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||1176|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||2290|
1	878473	.	G	A	45.69	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||1111|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||3802|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||920|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||99|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||291|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||201|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||1111|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||1112|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||2226|,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/13|c.1564+35G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/11|c.1285+35G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/6|c.1042+35G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	878474	.	C	T	27.22	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||1110|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||3803|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||921|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||100|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||292|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||202|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||1110|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||1111|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||2225|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/13|c.1564+36C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/11|c.1285+36C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/6|c.1042+36C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	878508	.	G	T	41.73	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>A|||||1076|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>T|||||3837|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>T|||||955|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>T|||||134|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>T|||||326|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>T|||||236|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>A|||||1076|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>A|||||1077|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>A|||||2191|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/13|c.1564+70G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/11|c.1285+70G>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/6|c.1042+70G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	878573	.	A	T	93.15	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300T>A|||||1011|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626A>T|||||3902|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318A>T|||||1020|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>T|||||199|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>T|||||391|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>T|||||301|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611T>A|||||1011|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201T>A|||||1012|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149T>A|||||2126|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:878566_878715|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|11/13|c.1565-60A>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|9/11|c.1286-60A>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|5/6|c.1043-60A>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	878764	.	G	C	6.83	.	AC=1;ANN=C|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|12/13|c.1689+7G>C||||||,C|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|10/11|c.1410+7G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|splice_region_variant&intron_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|6/6|c.1167+7G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||820|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||4093|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>C|||||1211|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>C|||||390|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>C|||||582|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>C|||||492|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||820|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||821|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||1935|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:878726_878875|||||||||
1	878784	.	C	G	143.0	.	AC=6;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>C|||||800|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>G|||||4113|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>G|||||1231|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>G|||||410|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>G|||||602|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>G|||||512|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>C|||||800|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>C|||||801|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>C|||||1915|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:878726_878875|||||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|12/13|c.1689+27C>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|10/11|c.1410+27C>G||||||WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|6/6|c.1167+27C>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	878785	.	G	A	12.9	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||799|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||4114|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||1232|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||411|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||603|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||513|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||799|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||800|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||1914|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:878726_878875|||||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|12/13|c.1689+28G>A||||||,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|10/11|c.1410+28G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|6/6|c.1167+28G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	878809	rs115172432	C	T	25.23	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||775|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||4138|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||1256|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||435|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||627|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||537|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||775|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||776|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||1890|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:878726_878875|||||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|12/13|c.1689+52C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|10/11|c.1410+52C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|6/6|c.1167+52C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	878895	.	G	C	59.15	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||689|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||4224|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>C|||||1342|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>C|||||521|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>C|||||713|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>C|||||623|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||689|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||690|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||1804|,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|12/13|c.1689+138G>C||||||,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|10/11|c.1410+138G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|6/6|c.1167+138G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	879015	rs116484427	C	T	373.12	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||569|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||4344|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||1462|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||641|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||833|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||743|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||569|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||570|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||1684|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|12/13|c.1690-63C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|10/11|c.1411-63C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|6/6|c.1168-63C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	879060	.	C	T	61.83	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||524|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||4389|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||1507|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||686|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||878|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||788|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||524|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||525|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||1639|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|12/13|c.1690-18C>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|10/11|c.1411-18C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|6/6|c.1168-18C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	879258	.	G	T	20.68	.	AC=1;ANN=T|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1348G>T|p.Asp450Tyr|1350/1731|1348/1623|450/540||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>A|||||326|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>T|||||4587|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>T|||||1705|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>T|||||884|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>T|||||1076|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>T|||||986|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>A|||||326|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>A|||||327|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>A|||||1441|,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|13/13|c.1801-30G>T||||||,T|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|11/11|c.1522-30G>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	879276	rs115454328	A	G	144.51	.	AC=15;ANN=G|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1366A>G|p.Ile456Val|1368/1731|1366/1623|456/540||WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300T>C|||||308|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626A>G|||||4605|WARNING_TRANSCRIPT_NO_STOP_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318A>G|||||1723|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||902|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||1094|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||1004|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611T>C|||||308|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201T>C|||||309|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149T>C|||||1423|,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|13/13|c.1801-12A>G||||||,G|intron_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|11/11|c.1522-12A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	879317	rs7523549	C	T	1470.04	.	AC=60;ANN=T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.1830C>T|p.Tyr610Tyr|1913/2551|1830/2046|610/681||,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.1551C>T|p.Tyr517Tyr|1553/2191|1551/1767|517/588||WARNING_TRANSCRIPT_NO_START_CODON,T|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1407C>T|p.Tyr469Tyr|1409/1731|1407/1623|469/540||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||267|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||4646|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||1764|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||943|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||1135|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||1045|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||267|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||268|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||1382|
1	879371	.	G	A	68.66	.	AC=2;ANN=A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.1884G>A|p.Pro628Pro|1967/2551|1884/2046|628/681||,A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.1605G>A|p.Pro535Pro|1607/2191|1605/1767|535/588||WARNING_TRANSCRIPT_NO_START_CODON,A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1461G>A|p.Pro487Pro|1463/1731|1461/1623|487/540||WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||213|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||4700|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||1818|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||997|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||1189|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||1099|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||213|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||214|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||1328|
1	879384	.	G	A	20.68	.	AC=6;ANN=A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.1897G>A|p.Gly633Ser|1980/2551|1897/2046|633/681||,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.1618G>A|p.Gly540Ser|1620/2191|1618/1767|540/588||WARNING_TRANSCRIPT_NO_START_CODON,A|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1474G>A|p.Gly492Ser|1476/1731|1474/1623|492/540||WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||200|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||4713|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||1831|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||1010|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||1202|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||1112|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||200|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||201|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||1315|
1	879413	rs116279254	G	A	316.56	.	AC=9;ANN=A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.1926G>A|p.Thr642Thr|2009/2551|1926/2046|642/681||,A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.1647G>A|p.Thr549Thr|1649/2191|1647/1767|549/588||WARNING_TRANSCRIPT_NO_START_CODON,A|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1503G>A|p.Thr501Thr|1505/1731|1503/1623|501/540||WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>T|||||171|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>A|||||4742|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||1860|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||1039|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||1231|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||1141|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>T|||||171|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>T|||||172|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||1286|
1	879431	.	T	C	101.67	.	AC=7;ANN=C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.1944T>C|p.Tyr648Tyr|2027/2551|1944/2046|648/681||,C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.1665T>C|p.Tyr555Tyr|1667/2191|1665/1767|555/588||WARNING_TRANSCRIPT_NO_START_CODON,C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1521T>C|p.Tyr507Tyr|1523/1731|1521/1623|507/540||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300A>G|||||153|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626T>C|||||4760|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>C|||||1878|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>C|||||1057|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542T>C|||||1249|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657T>C|||||1159|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611A>G|||||153|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201A>G|||||154|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149A>G|||||1268|
1	879481	rs113383096	G	C	744.21	.	AC=24;ANN=C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.1994G>C|p.Gly665Ala|2077/2551|1994/2046|665/681||,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.1715G>C|p.Gly572Ala|1717/2191|1715/1767|572/588||WARNING_TRANSCRIPT_NO_START_CODON,C|missense_variant|MODERATE|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1571G>C|p.Gly524Ala|1573/1731|1571/1623|524/540||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||103|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||4810|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>C|||||1928|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>C|||||1107|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>C|||||1299|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>C|||||1209|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||103|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||104|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||1218|
1	879482	.	G	C	156.67	.	AC=8;ANN=C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.1995G>C|p.Gly665Gly|2078/2551|1995/2046|665/681||,C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.1716G>C|p.Gly572Gly|1718/2191|1716/1767|572/588||WARNING_TRANSCRIPT_NO_START_CODON,C|synonymous_variant|LOW|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.1572G>C|p.Gly524Gly|1574/1731|1572/1623|524/540||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300C>G|||||102|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626G>C|||||4811|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>C|||||1929|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>C|||||1108|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>C|||||1300|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>C|||||1210|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611C>G|||||102|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201C>G|||||103|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>G|||||1217|
1	879576	rs115979567	C	T	1354.0	.	AC=45;ANN=T|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.*43C>T|||||43|,T|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.*43C>T|||||43|WARNING_TRANSCRIPT_NO_START_CODON,T|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.*43C>T|||||43|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.*2300G>A|||||8|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||4905|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||2023|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||1202|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||1394|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||1304|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.*1611G>A|||||8|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.*4201G>A|||||9|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||1123|
1	879595	.	C	T	14.91	.	AC=1;ANN=T|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.*62C>T|||||62|,T|3_prime_UTR_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|19/19|c.*479G>A|||||479|,T|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.*62C>T|||||62|WARNING_TRANSCRIPT_NO_START_CODON,T|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding|7/7|c.*62C>T|||||62|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000420190|protein_coding||c.*626C>T|||||4924|WARNING_TRANSCRIPT_NO_STOP_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||2042|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||1221|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||1413|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||1323|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||1104|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|5/5|n.1600G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|17/17|n.4191G>A||||||
1	879676	rs6605067	G	A	49618.96	.	AC=863;ANN=A|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.*143G>A|||||143|,A|3_prime_UTR_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|19/19|c.*398C>T|||||398|,A|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.*143G>A|||||143|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||37|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||2123|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||1302|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||1494|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||1404|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||1023|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|5/5|n.1519C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|17/17|n.4110C>T||||||
1	879687	rs2839	T	C	42859.15	.	AC=851;ANN=C|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.*154T>C|||||154|,C|3_prime_UTR_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|19/19|c.*387A>G|||||387|,C|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.*154T>C|||||154|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>C|||||48|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>C|||||2134|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>C|||||1313|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542T>C|||||1505|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657T>C|||||1415|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149A>G|||||1012|,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|5/5|n.1508A>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|17/17|n.4099A>G||||||
1	879911	.	G	A	137.61	.	AC=10;ANN=A|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding|14/14|c.*378G>A|||||378|,A|3_prime_UTR_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|19/19|c.*163C>T|||||163|,A|3_prime_UTR_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding|12/12|c.*378G>A|||||378|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||272|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||2358|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||1537|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||1729|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||1639|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||788|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|5/5|n.1284C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|17/17|n.3875C>T||||||
1	880012	.	A	G	30.71	.	AC=1;ANN=G|3_prime_UTR_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|19/19|c.*62T>C|||||62|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||57|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||57|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||373|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318A>G|||||2459|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||1638|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||1830|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||1740|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149T>C|||||687|,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|5/5|n.1183T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|17/17|n.3774T>C||||||
1	880217	rs61551591	T	C	73.44	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>C|||||262|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>C|||||262|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>C|||||578|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>C|||||2664|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>C|||||1843|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542T>C|||||2035|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657T>C|||||1945|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149A>G|||||482|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|18/18|c.2144-37A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|4/4|n.1015-37A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|16/16|n.3606-37A>G||||||
1	880238	rs3748592	A	G	50302.58	.	AC=931;ANN=G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||283|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||283|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||599|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318A>G|||||2685|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||1864|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||2056|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||1966|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149T>C|||||461|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|18/18|c.2144-58T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|4/4|n.1015-58T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|16/16|n.3606-58T>C||||||
1	880366	.	C	T	99.69	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||411|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||411|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||727|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||2813|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||1992|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||2184|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||2094|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||333|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|18/18|c.2143+71G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|4/4|n.1014+56G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|16/16|n.3605+56G>A||||||
1	880390	rs3748593	C	A	2274.0	.	AC=67;ANN=A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>A|||||435|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>A|||||435|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>A|||||751|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>A|||||2837|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>A|||||2016|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>A|||||2208|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>A|||||2118|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>T|||||309|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|18/18|c.2143+47G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|4/4|n.1014+32G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|16/16|n.3605+32G>T||||||
1	880502	rs74047418	C	T	138.23	.	AC=2;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|18/19|c.2078G>A|p.Arg693Gln|2128/2790|2078/2250|693/749||,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||547|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||547|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||863|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||2949|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||2128|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||2320|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||2230|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149G>A|||||197|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|4/5|n.934G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|16/17|n.3525G>A||||||
1	880647	.	G	A	62.04	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||692|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||692|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1008|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||3094|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||2273|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||2465|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||2375|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149C>T|||||52|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|17/18|c.2054-121C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|3/4|n.910-121C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|15/16|n.3501-121C>T||||||
1	880679	rs114782273	T	C	156.95	.	AC=7;ANN=C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>C|||||724|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>C|||||724|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>C|||||1040|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>C|||||3126|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>C|||||2305|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542T>C|||||2497|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657T>C|||||2407|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.*149A>G|||||20|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|17/18|c.2054-153A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|3/4|n.910-153A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|15/16|n.3501-153A>G||||||
1	880751	rs113563466	A	G	1457.42	.	AC=32;ANN=G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||796|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||796|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||1112|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318A>G|||||3198|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||2377|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||2569|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||2479|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|17/18|c.2053+147T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|3/4|n.909+147T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|15/16|n.3500+147T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript|2/2|n.97T>C||||||
1	880902	.	C	T	24.84	.	AC=2;ANN=T|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|17/19|c.2049G>A|p.Glu683Glu|2099/2790|2049/2250|683/749||,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||947|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||947|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||1263|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||3349|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||2528|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||2720|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||2630|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:880766_880915|||||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|3/5|n.905G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|15/17|n.3496G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript|1/2|n.41G>A||||||
1	880906	rs77999481	G	A	62.61	.	AC=1;ANN=A|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|17/19|c.2045C>T|p.Ser682Leu|2095/2790|2045/2250|682/749||,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||951|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||951|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1267|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||3353|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||2532|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||2724|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||2634|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:880766_880915|||||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|3/5|n.901C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|15/17|n.3492C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript|1/2|n.37C>T||||||
1	880922	.	C	T	66.74	.	AC=1;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|17/19|c.2029G>A|p.Asp677Asn|2079/2790|2029/2250|677/749||,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||967|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||967|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||1283|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||3369|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||2548|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||2740|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||2650|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|3/5|n.885G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|15/17|n.3476G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript|1/2|n.21G>A||||||
1	880944	rs112433394	G	A	11.12	.	AC=1;ANN=A|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|17/19|c.2007C>T|p.Asp669Asp|2057/2790|2007/2250|669/749||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||2|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||989|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||989|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1305|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||3391|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||2570|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||2762|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||2672|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|3/5|n.863C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|15/17|n.3454C>T||||||
1	881070	rs41285794	G	A	334.38	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||128|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||1115|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||1115|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1431|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||3517|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||2696|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||2888|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||2798|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/18|c.1918-37C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/4|n.774-37C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/16|n.3365-37C>T||||||
1	881151	rs114362907	T	C	143.64	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||209|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>C|||||1196|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>C|||||1196|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>C|||||1512|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>C|||||3598|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>C|||||2777|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542T>C|||||2969|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657T>C|||||2879|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/18|c.1918-118A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/4|n.774-118A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/16|n.3365-118A>G||||||
1	881323	.	G	A	70.75	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||381|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||1368|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||1368|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1684|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||3770|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||2949|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||3141|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||3051|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/18|c.1917+230C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/4|n.773+230C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/16|n.3364+230C>T||||||
1	881377	rs74360597	G	A	2668.75	.	AC=80;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||435|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||1422|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||1422|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1738|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||3824|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||3003|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||3195|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||3105|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/18|c.1917+176C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/4|n.773+176C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/16|n.3364+176C>T||||||
1	881430	.	C	T	14.05	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||488|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||1475|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||1475|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||1791|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||3877|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||3056|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||3248|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||3158|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/18|c.1917+123G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/4|n.773+123G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/16|n.3364+123G>A||||||
1	881512	rs41285796	G	T	94.84	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>A|||||570|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>T|||||1557|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>T|||||1557|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>T|||||1873|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>T|||||3959|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>T|||||3138|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>T|||||3330|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>T|||||3240|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/18|c.1917+41C>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/4|n.773+41C>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/16|n.3364+41C>A||||||
1	881587	.	C	T	172.11	.	AC=2;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/19|c.1883G>A|p.Arg628Gln|1933/2790|1883/2250|628/749||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||645|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||1632|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||1632|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||1948|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||4034|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||3213|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||3405|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||3315|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/5|n.739G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/17|n.3330G>A||||||
1	881588	.	G	A	60.97	.	AC=1;ANN=A|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/19|c.1882C>T|p.Arg628Trp|1932/2790|1882/2250|628/749||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||646|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||1633|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||1633|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1949|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||4035|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||3214|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||3406|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||3316|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/5|n.738C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/17|n.3329C>T||||||
1	881602	.	C	T	86.11	.	AC=5;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/19|c.1868G>A|p.Arg623His|1918/2790|1868/2250|623/749||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||660|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||1647|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||1647|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||1963|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||4049|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||3228|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||3420|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||3330|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/5|n.724G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/17|n.3315G>A||||||
1	881627	rs2272757	G	A	24734.0	.	AC=494;ANN=A|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|16/19|c.1843C>T|p.Leu615Leu|1893/2790|1843/2250|615/749||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||685|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||1672|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||1672|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||1988|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||4074|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||3253|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||3445|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||3355|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|2/5|n.699C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|14/17|n.3290C>T||||||
1	881699	rs112513384	C	A	20.3	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>T|||||757|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>A|||||1744|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>A|||||1744|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>A|||||2060|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>A|||||4146|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>A|||||3325|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>A|||||3517|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>A|||||3427|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|15/18|c.1804-33G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/4|n.660-33G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|13/16|n.3251-33G>T||||||
1	881734	rs74045012	T	C	1375.95	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||792|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>C|||||1779|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>C|||||1779|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>C|||||2095|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>C|||||4181|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>C|||||3360|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542T>C|||||3552|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657T>C|||||3462|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|15/18|c.1803+48A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/4|n.659+48A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|13/16|n.3250+48A>G||||||
1	881748	.	C	T	38.79	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||806|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||1793|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||1793|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||2109|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||4195|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||3374|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||3566|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||3476|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|15/18|c.1803+34G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/4|n.659+34G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|13/16|n.3250+34G>A||||||
1	881918	rs35471880	G	A	1514.94	.	AC=44;ANN=A|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|15/19|c.1667C>T|p.Ser556Leu|1717/2790|1667/2250|556/749||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||976|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||1963|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||1963|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||2279|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||4365|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||3544|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||3736|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||3646|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.523C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|13/17|n.3114C>T||||||
1	881964	.	G	A	112.35	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||1022|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||2009|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||2009|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||2325|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||4411|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||3590|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||3782|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||3692|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-39C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-39C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.477C>T||||||
1	882033	rs2272756	G	A	13968.28	.	AC=227;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||1091|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||2078|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||2078|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||2394|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||4480|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||3659|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||3851|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||3761|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-108C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-108C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.408C>T||||||
1	882109	.	C	G	180.8	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>C|||||1167|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>G|||||2154|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>G|||||2154|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>G|||||2470|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>G|||||4556|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>G|||||3735|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>G|||||3927|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>G|||||3837|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-184G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-184G>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.332G>C||||||
1	882205	.	A	C	42.96	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>G|||||1263|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>C|||||2250|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>C|||||2250|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>C|||||2566|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318A>C|||||4652|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>C|||||3831|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>C|||||4023|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>C|||||3933|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-280T>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-280T>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.236T>G||||||
1	882208	.	C	T	156.59	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||1266|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||2253|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||2253|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||2569|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>T|||||4655|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||3834|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||4026|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||3936|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-283G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-283G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.233G>A||||||
1	882212	.	T	G	85.39	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>C|||||1270|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>G|||||2257|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>G|||||2257|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>G|||||2573|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318T>G|||||4659|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>G|||||3838|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542T>G|||||4030|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657T>G|||||3940|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-287A>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-287A>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.229A>C||||||
1	882250	rs111463901	C	A	1319.39	.	AC=42;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>T|||||1308|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>A|||||2295|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>A|||||2295|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>A|||||2611|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318C>A|||||4697|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>A|||||3876|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>A|||||4068|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>A|||||3978|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-325G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-325G>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.191G>T||||||
1	882392	rs112689554	G	A	783.73	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||1450|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||2437|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||2437|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||2753|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||4839|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||4018|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||4210|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||4120|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-467C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-467C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron|1/5|n.49C>T||||||
1	882490	.	G	A	32.85	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||50|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||1548|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||2535|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||2535|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||2851|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318G>A|||||4937|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||4116|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||4308|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||4218|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-565C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-565C>T||||||
1	882501	.	A	G	157.95	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||61|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||1559|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||2546|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||2546|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||2862|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000478729|processed_transcript||n.*318A>G|||||4948|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||4127|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||4319|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||4229|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-576T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-576T>C||||||
1	882567	.	C	A	8.73	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>T|||||127|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>T|||||1625|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>A|||||2612|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>A|||||2612|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>A|||||2928|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>A|||||4193|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>A|||||4385|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>A|||||4295|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1660-642G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3107-642G>T||||||
1	882803	rs2340582	A	G	64682.54	.	AC=964;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||363|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||1861|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||2848|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||2848|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||3164|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||4429|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||4621|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||4531|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+708T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+708T>C||||||
1	882819	.	G	A	110.38	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||379|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||1877|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||2864|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||2864|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||3180|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||4445|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||4637|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||4547|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+692C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+692C>T||||||
1	882896	.	C	A	28.37	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>T|||||456|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>T|||||1954|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>A|||||2941|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>A|||||2941|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>A|||||3257|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>A|||||4522|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>A|||||4714|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>A|||||4624|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+615G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+615G>T||||||
1	882978	.	C	T	15.22	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||538|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||2036|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||3023|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||3023|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||3339|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||4604|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||4796|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||4706|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+533G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+533G>A||||||
1	882999	rs78582411	A	G	84.7	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||559|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||2057|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||3044|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||3044|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||3360|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||4625|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||4817|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||4727|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+512T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+512T>C||||||
1	883008	rs60851523	C	T	1409.29	.	AC=52;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||568|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||2066|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||3053|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||3053|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||3369|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>T|||||4634|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>T|||||4826|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>T|||||4736|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+503G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+503G>A||||||
1	883035	.	A	G	154.84	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||595|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||2093|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||3080|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||3080|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||3396|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862A>G|||||4661|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542A>G|||||4853|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657A>G|||||4763|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+476T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+476T>C||||||
1	883041	rs57171501	C	G	1464.8	.	AC=52;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||601|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>C|||||2099|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>G|||||3086|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>G|||||3086|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>G|||||3402|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862C>G|||||4667|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542C>G|||||4859|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657C>G|||||4769|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+470G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+470G>C||||||
1	883091	rs61769752	G	A	1023.74	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||651|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||2149|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||3136|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||3136|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||3452|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||4717|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||4909|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||4819|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+420C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+420C>T||||||
1	883105	.	G	A	46.41	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||665|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||2163|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||3150|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||3150|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||3466|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>A|||||4731|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>A|||||4923|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>A|||||4833|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+406C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+406C>T||||||
1	883107	.	G	C	6.64	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>G|||||667|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>G|||||2165|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>C|||||3152|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>C|||||3152|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>C|||||3468|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862G>C|||||4733|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000466827|retained_intron||n.*542G>C|||||4925|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000464948|retained_intron||n.*657G>C|||||4835|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+404C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+404C>G||||||
1	883278	.	T	C	40.59	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||838|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||2336|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>C|||||3323|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>C|||||3323|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>C|||||3639|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000474461|retained_intron||n.*862T>C|||||4904|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+233A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+233A>G||||||
1	883379	.	C	T	104.12	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||939|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||2437|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||3424|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||3424|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||3740|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+132G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+132G>A||||||
1	883463	.	A	T	754.08	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>A|||||1023|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>A|||||2521|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>T|||||3508|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>T|||||3508|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>T|||||3824|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|14/18|c.1659+48T>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|12/16|n.3106+48T>A||||||
1	883625	rs4970378	A	G	37329.85	.	AC=756;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||1185|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||2683|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||3670|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||3670|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>G|||||3986|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|13/18|c.1558-13T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|11/16|n.3005-13T>C||||||
1	883632	.	G	A	39.77	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||1192|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||2690|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||3677|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||3677|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||3993|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|13/18|c.1558-20C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|11/16|n.3005-20C>T||||||
1	883666	.	C	T	295.79	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||1226|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||2724|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||3711|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||3711|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||4027|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|13/18|c.1558-54G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|11/16|n.3005-54G>A||||||
1	883699	rs58979014	C	T	1192.37	.	AC=46;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||1259|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||2757|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||3744|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||3744|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||4060|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|13/18|c.1558-87G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|11/16|n.3005-87G>A||||||
1	883994	.	G	A	88.74	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||1554|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3052|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4039|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4039|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||4355|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-11C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-11C>T||||||
1	884020	.	T	C	11.96	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||1580|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||3078|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>C|||||4065|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>C|||||4065|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>C|||||4381|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-37A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-37A>G||||||
1	884038	.	T	G	116.73	.	AC=15;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>C|||||1598|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>C|||||3096|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129T>G|||||4083|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769T>G|||||4083|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625T>G|||||4399|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-55A>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-55A>C||||||
1	884091	rs7522415	C	G	35667.96	.	AC=523;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||1651|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>C|||||3149|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>G|||||4136|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>G|||||4136|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>G|||||4452|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-108G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-108G>C||||||
1	884101	rs4970455	A	C	10477.91	.	AC=227;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>G|||||1661|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>G|||||3159|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>C|||||4146|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>C|||||4146|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625A>C|||||4462|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-118T>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-118T>G||||||
1	884125	.	G	A	13.78	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||1685|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3183|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4170|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4170|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||4486|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-142C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-142C>T||||||
1	884205	.	C	T	7.73	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||1765|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||3263|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||4250|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||4250|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||4566|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-222G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-222G>A||||||
1	884244	.	G	A	17.43	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||1804|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3302|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4289|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4289|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||4605|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-261C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-261C>T||||||
1	884302	.	C	G	304.29	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||1862|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>C|||||3360|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>G|||||4347|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>G|||||4347|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>G|||||4663|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-319G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-319G>C||||||
1	884314	.	G	C	181.47	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>G|||||1874|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>G|||||3372|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>C|||||4359|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>C|||||4359|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>C|||||4675|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-331C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-331C>G||||||
1	884373	.	G	C	36.87	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>G|||||1933|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>G|||||3431|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>C|||||4418|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>C|||||4418|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>C|||||4734|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-390C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-390C>G||||||
1	884394	rs4517296	C	T	40.82	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||1954|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||3452|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>T|||||4439|,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>T|||||4439|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>T|||||4755|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-411G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-411G>A||||||
1	884402	rs114651174	C	G	472.25	.	AC=22;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||1962|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>C|||||3460|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129C>G|||||4447|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769C>G|||||4447|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625C>G|||||4763|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-419G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-419G>C||||||
1	884506	.	G	C	110.96	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>G|||||2066|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>G|||||3564|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>C|||||4551|,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>C|||||4551|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>C|||||4867|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-523C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-523C>G||||||
1	884529	rs111732612	G	A	42.98	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2089|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3587|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4574|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4574|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||4890|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-546C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-546C>T||||||
1	884635	rs74045014	G	A	1628.94	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2195|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3693|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4680|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4680|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000455979|protein_coding||c.*1625G>A|||||4996|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-652C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-652C>T||||||
1	884762	rs117607626	G	A	35.15	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2322|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3820|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4807|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4807|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-779C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-779C>T||||||
1	884767	rs67274836	G	A	518.4	.	AC=23;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2327|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3825|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4812|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4812|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-784C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-784C>T||||||
1	884815	rs4246503	A	G	43680.14	.	AC=893;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||2375|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||3873|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||4860|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||4860|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||4991|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-832T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-832T>C||||||
1	884831	.	G	A	11.58	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2391|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3889|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4876|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4876|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4975|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-848C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-848C>T||||||
1	884870	.	G	A	42.02	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2430|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||3928|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129G>A|||||4915|,A|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769G>A|||||4915|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4936|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-887C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-887C>T||||||
1	884920	.	A	G	73.33	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||2480|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||3978|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000342066|protein_coding||c.*2129A>G|||||4965|,G|downstream_gene_variant|MODIFIER|SAMD11|ENSG00000187634|transcript|ENST00000341065|protein_coding||c.*1769A>G|||||4965|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||4886|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-937T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-937T>C||||||
1	884985	.	G	A	131.8	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2545|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4043|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4821|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1002C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1002C>T||||||
1	884986	rs115258275	T	C	83.75	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||2546|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||4044|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||4820|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1003A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1003A>G||||||
1	885043	rs74045015	T	C	1410.1	.	AC=29;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||2603|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||4101|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||4763|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1060A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1060A>G||||||
1	885097	.	G	C	65.76	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>G|||||2657|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>G|||||4155|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>G|||||4709|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1114C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1114C>G||||||
1	885098	.	G	A	130.75	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2658|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4156|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4708|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1115C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1115C>T||||||
1	885155	rs78729032	C	G	289.51	.	AC=9;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||2715|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>C|||||4213|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>C|||||4651|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1172G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1172G>C||||||
1	885173	rs72904529	C	T	43.0	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||2733|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4231|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||4633|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1190G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1190G>A||||||
1	885195	.	C	G	306.33	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||2755|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>C|||||4253|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>C|||||4611|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1212G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1212G>C||||||
1	885227	.	C	T	73.55	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||2787|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4285|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||4579|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1244G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1244G>A||||||
1	885232	.	G	A	50.59	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2792|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4290|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4574|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1249C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1249C>T||||||
1	885239	rs115419643	T	C	138.1	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||2799|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||4297|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||4567|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1444-1256A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2891-1256A>G||||||
1	885298	.	G	A	37.72	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2858|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4356|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4508|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+1209C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+1209C>T||||||
1	885335	rs76376426	G	A	629.55	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||2895|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4393|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4471|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+1172C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+1172C>T||||||
1	885476	.	G	A	44.04	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3036|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4534|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4330|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+1031C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+1031C>T||||||
1	885504	.	G	A	48.45	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3064|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4562|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4302|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+1003C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+1003C>T||||||
1	885545	.	C	A	178.07	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>T|||||3105|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>T|||||4603|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||4261|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+962G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+962G>T||||||
1	885568	.	C	A	360.78	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>T|||||3128|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>T|||||4626|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||4238|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+939G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+939G>T||||||
1	885600	.	G	A	54.66	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3160|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4658|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4206|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+907C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+907C>T||||||
1	885625	.	A	C	162.89	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>G|||||3185|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>G|||||4683|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>G|||||4181|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+882T>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+882T>G||||||
1	885638	.	A	C	72.19	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>G|||||3198|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>G|||||4696|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>G|||||4168|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+869T>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+869T>G||||||
1	885652	.	C	T	228.45	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3212|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4710|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||4154|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+855G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+855G>A||||||
1	885657	rs116767636	G	A	11223.28	.	AC=107;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3217|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4715|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4149|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+850C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+850C>T||||||
1	885676	rs4970377	C	A	142004.01	.	AC=980;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>T|||||3236|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>T|||||4734|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||4130|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+831G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+831G>T||||||
1	885684	.	T	C	225.11	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||3244|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||4742|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||4122|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+823A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+823A>G||||||
1	885689	rs4970452	G	A	141350.62	.	AC=992;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3249|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4747|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4117|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+818C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+818C>T||||||
1	885691	.	A	T	71.71	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>A|||||3251|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>A|||||4749|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>A|||||4115|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+816T>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+816T>A||||||
1	885698	rs114091054	C	T	5354.06	.	AC=51;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3258|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4756|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||4108|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+809G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+809G>A||||||
1	885699	rs4970376	A	G	124854.74	.	AC=984;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||3259|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1T>C|||||4757|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||4107|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+808T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+808T>C||||||
1	885756	.	C	T	5905.18	.	AC=37;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3316|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4814|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||4050|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+751G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+751G>A||||||
1	885765	rs114631528	G	A	1944.64	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3325|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4823|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||4041|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+742C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+742C>T||||||
1	885792	.	C	T	5.04	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3352|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4850|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||4014|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+715G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+715G>A||||||
1	885812	.	G	T	1844.45	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>A|||||3372|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>A|||||4870|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>A|||||3994|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+695C>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+695C>A||||||
1	885835	.	G	A	38.82	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3395|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4893|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3971|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+672C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+672C>T||||||
1	885876	.	T	C	77.02	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||3436|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1A>G|||||4934|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||3930|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+631A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+631A>G||||||
1	885904	rs76451547	C	T	2930.47	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3464|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4962|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3902|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+603G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+603G>A||||||
1	885905	.	G	A	56.92	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3465|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4963|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3901|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+602C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+602C>T||||||
1	885916	.	C	T	113.4	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3476|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1G>A|||||4974|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3890|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+591G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+591G>A||||||
1	885917	.	G	A	8.74	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3477|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4975|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3889|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+590C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+590C>T||||||
1	885922	rs111378522	G	A	5655.48	.	AC=36;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3482|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000496938|processed_transcript||n.-1C>T|||||4980|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3884|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+585C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+585C>T||||||
1	885945	rs28535998	G	C	10406.8	.	AC=103;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>G|||||3505|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>G|||||3861|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+562C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+562C>G||||||
1	886006	rs4970375	T	C	110277.01	.	AC=998;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||3566|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||3800|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+501A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+501A>G||||||
1	886049	.	A	G	205.12	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||3609|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||3757|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+458T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+458T>C||||||
1	886077	.	G	A	65.08	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3637|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3729|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+430C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+430C>T||||||
1	886090	.	G	A	9.15	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3650|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3716|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+417C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+417C>T||||||
1	886109	.	C	T	142.63	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3669|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3697|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+398G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+398G>A||||||
1	886131	.	C	T	25.3	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3691|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3675|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+376G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+376G>A||||||
1	886189	.	T	A	773.61	.	AC=84;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>T|||||3749|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>T|||||3617|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+318A>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+318A>T||||||
1	886206	rs57325195	A	G	1643.58	.	AC=53;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||3766|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||3600|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+301T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+301T>C||||||
1	886264	.	C	A	22.16	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>T|||||3824|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||3542|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+243G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+243G>T||||||
1	886274	.	T	C	53.31	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||3834|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||3532|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+233A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+233A>G||||||
1	886324	rs56106321	G	A	52.13	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3884|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3482|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+183C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+183C>T||||||
1	886384	rs3748594	G	A	4672.06	.	AC=94;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||3944|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3422|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+123C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+123C>T||||||
1	886409	rs77573237	G	C	619.52	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>G|||||3969|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>G|||||3397|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+98C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+98C>G||||||
1	886419	.	C	T	11.62	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||3979|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3387|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+88G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+88G>A||||||
1	886477	rs74045017	G	A	801.48	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||4037|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3329|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+30C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+30C>T||||||
1	886492	rs114938545	C	T	1253.91	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||4052|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3314|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|12/18|c.1443+15G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|10/16|n.2890+15G>A||||||
1	886719	.	C	G	87.06	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||4279|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>C|||||3087|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-101G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-101G>C||||||
1	886720	.	C	T	60.12	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||4280|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3086|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-102G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-102G>A||||||
1	886750	.	C	T	13.38	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||4310|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||3056|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-132G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-132G>A||||||
1	886767	.	T	G	44.23	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>C|||||4327|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>C|||||3039|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-149A>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-149A>C||||||
1	886788	rs10465242	G	A	43310.04	.	AC=812;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||4348|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3018|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-170C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-170C>T||||||
1	886789	.	G	A	30.58	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||4349|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||3017|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-171C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-171C>T||||||
1	886817	rs10465241	C	T	39691.23	.	AC=791;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||4377|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||2989|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-199G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-199G>A||||||
1	886820	.	C	T	14.03	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>A|||||4380|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||2986|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1332-202G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2779-202G>A||||||
1	887021	.	A	G	26.85	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1T>C|||||4581|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||2785|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1331+359T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2778+359T>C||||||
1	887059	rs76456117	G	A	7928.87	.	AC=113;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||4619|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||2747|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1331+321C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2778+321C>T||||||
1	887094	rs74045018	C	G	1861.59	.	AC=39;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>C|||||4654|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>C|||||2712|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1331+286G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2778+286G>C||||||
1	887130	.	G	A	186.83	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1C>T|||||4690|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||2676|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1331+250C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2778+250C>T||||||
1	887162	rs17160698	T	C	1131.72	.	AC=37;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1A>G|||||4722|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||2644|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1331+218A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2778+218A>G||||||
1	887265	rs41285800	C	A	158.29	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000483767|retained_intron||n.-1G>T|||||4825|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||2541|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/18|c.1331+115G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/16|n.2778+115G>T||||||
1	887442	rs62639960	G	A	22.46	.	AC=1;ANN=A|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/19|c.1269C>T|p.Gly423Gly|1319/2790|1269/2250|423/749||,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||2364|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/17|n.2716C>T||||||
1	887471	rs114187206	G	A	216.62	.	AC=9;ANN=A|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|11/19|c.1240C>T|p.Leu414Leu|1290/2790|1240/2250|414/749||,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||2335|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|9/17|n.2687C>T||||||
1	887537	rs74045020	C	T	1227.54	.	AC=36;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||2269|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/18|c.1192-18G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/16|n.2639-18G>A||||||
1	887560	rs3748595	A	C	46011.39	.	AC=785;ANN=C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>G|||||2246|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/18|c.1192-41T>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/16|n.2639-41T>G||||||
1	887577	.	G	A	234.85	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||2229|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/18|c.1192-58C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/16|n.2639-58C>T||||||
1	887642	.	C	A	72.35	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||2164|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/18|c.1192-123G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/16|n.2639-123G>T||||||
1	887651	.	C	T	66.64	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||2155|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/18|c.1192-132G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/16|n.2639-132G>A||||||
1	887704	.	G	A	59.91	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||2102|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/18|c.1191+88C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/16|n.2638+88C>T||||||
1	887712	rs114791431	C	A	53.52	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||2094|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/18|c.1191+80G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/16|n.2638+80G>T||||||
1	887801	rs3828047	A	G	43099.94	.	AC=762;ANN=G|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|10/19|c.1182T>C|p.Thr394Thr|1232/2790|1182/2250|394/749||,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||2005|,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|8/17|n.2629T>C||||||
1	888205	.	G	A	195.42	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||1601|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/18|c.1003-225C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/16|n.2450-225C>T||||||
1	888220	rs28711536	G	A	1541.65	.	AC=74;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||1586|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/18|c.1003-240C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/16|n.2450-240C>T||||||
1	888239	rs58215279	C	T	1271.22	.	AC=47;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||1567|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/18|c.1003-259G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/16|n.2450-259G>A||||||
1	888389	.	C	T	541.45	.	AC=9;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||1417|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/18|c.1002+166G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/16|n.2449+166G>A||||||
1	888442	.	G	C	93.27	.	AC=6;ANN=C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>G|||||1364|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/18|c.1002+113C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/16|n.2449+113C>G||||||
1	888563	.	C	T	11.3	.	AC=2;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/19|c.994G>A|p.Val332Ile|1044/2790|994/2250|332/749||,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||1243|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/17|n.2441G>A||||||
1	888564	.	G	A	135.29	.	AC=2;ANN=A|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/19|c.993C>T|p.Pro331Pro|1043/2790|993/2250|331/749||,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||1242|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/17|n.2440C>T||||||
1	888639	rs3748596	T	C	43938.03	.	AC=844;ANN=C|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/19|c.918A>G|p.Glu306Glu|968/2790|918/2250|306/749||,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||1167|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||4987|,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/17|n.2365A>G||||||
1	888659	rs3748597	T	C	41479.61	.	AC=851;ANN=C|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|9/19|c.898A>G|p.Ile300Val|948/2790|898/2250|300/749||,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>G|||||1147|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||4967|,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|7/17|n.2345A>G||||||
1	888793	.	G	A	41.1	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||1013|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4833|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.889-125C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2336-125C>T||||||
1	888818	.	G	A	79.89	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||988|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4808|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.889-150C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2336-150C>T||||||
1	888844	rs111471923	G	A	65.0	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||962|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4782|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.889-176C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2336-176C>T||||||
1	888858	.	G	A	60.11	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||948|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4768|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.889-190C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2336-190C>T||||||
1	888891	.	C	T	49.5	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||915|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||4735|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.889-223G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2336-223G>A||||||
1	889118	.	C	A	10.68	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||688|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||4508|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.888+44G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2335+44G>T||||||
1	889131	rs3828048	A	G	1182.61	.	AC=66;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>C|||||675|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||4495|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.888+31T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2335+31T>C||||||
1	889158	rs56262069	G	C	33101.4	.	AC=682;ANN=C|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.888+4C>G||||||,C|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2335+4C>G||||||,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>G|||||648|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||4468|
1	889159	rs13302945	A	C	35448.0	.	AC=686;ANN=C|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/18|c.888+3T>G||||||,C|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/16|n.2335+3T>G||||||,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865T>G|||||647|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>G|||||4467|
1	889238	rs3828049	G	A	1874.98	.	AC=62;ANN=A|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/19|c.812C>T|p.Ala271Val|862/2790|812/2250|271/749||,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||568|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4388|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/17|n.2259C>T||||||
1	889255	.	C	T	22.58	.	AC=2;ANN=T|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|8/19|c.795G>A|p.Ser265Ser|845/2790|795/2250|265/749||,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||551|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||4371|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|6/17|n.2242G>A||||||
1	889286	.	G	A	846.03	.	AC=27;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||520|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4340|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|7/18|c.778-14C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/16|n.2225-14C>T||||||
1	889310	rs115055432	G	A	66.17	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||496|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4316|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|7/18|c.778-38C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/16|n.2225-38C>T||||||
1	889317	.	G	A	8.44	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||489|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4309|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|7/18|c.778-45C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/16|n.2225-45C>T||||||
1	889362	.	G	A	10.05	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||444|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4264|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|7/18|c.777+22C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/16|n.2224+22C>T||||||
1	889375	.	G	A	97.39	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||431|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4251|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|7/18|c.777+9C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/16|n.2224+9C>T||||||
1	889403	rs62639963	T	A	346.32	.	AC=6;ANN=A|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|7/19|c.758A>T|p.Tyr253Phe|808/2790|758/2250|253/749||,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865A>T|||||403|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>T|||||4223|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.2205A>T||||||
1	889426	.	C	T	278.34	.	AC=9;ANN=T|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|7/19|c.735G>A|p.Lys245Lys|785/2790|735/2250|245/749||,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||380|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||4200|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.2182G>A||||||
1	889472	.	G	C	101.16	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>G|||||334|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||4154|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-10C>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.2136C>G||||||
1	889561	.	G	A	143.7	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||245|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||4065|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-99C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.2047C>T||||||
1	889638	rs13303206	G	C	49958.82	.	AC=914;ANN=C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>G|||||168|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||3988|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-176C>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1970C>G||||||
1	889713	rs13303051	C	A	50705.07	.	AC=891;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>T|||||93|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||3913|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-251G>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1895G>T||||||
1	889714	.	G	T	128.0	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>A|||||92|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>A|||||3912|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-252C>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1894C>A||||||
1	889715	.	C	T	119.24	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865G>A|||||91|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||3911|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-253G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1893G>A||||||
1	889729	.	G	A	15.15	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.*865C>T|||||77|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||3897|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-267C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1879C>T||||||
1	889817	.	C	G	43.72	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>C|||||3809|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-355G>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1791G>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|7/7|n.854G>C||||||
1	889876	.	C	G	535.41	.	AC=17;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>C|||||3750|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-414G>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1732G>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|7/7|n.795G>C||||||
1	889879	.	A	G	42.98	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||3747|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-417T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|5/17|n.1729T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|7/7|n.792T>C||||||
1	889921	.	A	G	124.96	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||3705|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-459T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-18T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-18T>C||||||
1	890006	.	A	G	801.4	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||3620|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-544T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-103T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-103T>C||||||
1	890087	.	G	A	37.28	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||3539|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-625C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-184C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-184C>T||||||
1	890104	rs28631199	G	A	18241.68	.	AC=263;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||3522|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-642C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-201C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-201C>T||||||
1	890146	rs28679271	G	A	114.7	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||3480|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-684C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-243C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-243C>T||||||
1	890195	.	C	T	5.77	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||3431|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-733G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-292G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-292G>A||||||
1	890219	rs77259182	C	A	670.21	.	AC=23;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||3407|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-757G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-316G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-316G>T||||||
1	890252	rs78900575	A	G	62.75	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||3374|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-790T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-349T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-349T>C||||||
1	890272	rs74045022	G	C	2738.11	.	AC=42;ANN=C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||3354|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-810C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-369C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-369C>G||||||
1	890276	.	T	G	72.84	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>C|||||3350|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-814A>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-373A>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-373A>C||||||
1	890295	rs6661531	G	C	9520.67	.	AC=118;ANN=C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||3331|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-833C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-392C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-392C>G||||||
1	890329	.	A	G	28.03	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||3297|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.699-867T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1705-426T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.768-426T>C||||||
1	890614	.	C	T	53.31	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||3012|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+689G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+689G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+689G>A||||||
1	890744	rs111739060	G	A	43.86	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||2882|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+559C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+559C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+559C>T||||||
1	890772	.	C	G	88.64	.	AC=8;ANN=G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>C|||||2854|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+531G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+531G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+531G>C||||||
1	890809	.	G	A	43.86	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||2817|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+494C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+494C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+494C>T||||||
1	890831	.	C	T	18.18	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||2795|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+472G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+472G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+472G>A||||||
1	890905	.	C	T	50.46	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||2721|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+398G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+398G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+398G>A||||||
1	890931	.	G	A	258.02	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||2695|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+372C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+372C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+372C>T||||||
1	890945	.	A	T	296.42	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>A|||||2681|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+358T>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+358T>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+358T>A||||||
1	890986	.	C	T	58.26	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||4981|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||2640|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+317G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+317G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+317G>A||||||
1	891021	rs13302957	G	A	69978.47	.	AC=969;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||4946|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||2605|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+282C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+282C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+282C>T||||||
1	891049	rs117770195	C	T	865.83	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||4918|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||2577|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+254G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+254G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+254G>A||||||
1	891059	rs13303065	C	T	39546.15	.	AC=587;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||4908|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||2567|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+244G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+244G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+244G>A||||||
1	891277	rs77608078	C	T	81.32	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||4690|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||2349|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/18|c.698+26G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/16|n.1704+26G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/6|n.767+26G>A||||||
1	891358	.	G	T	44.77	.	AC=1;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|6/19|c.643C>A|p.Leu215Ile|693/2790|643/2250|215/749||,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>T|||||4609|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>A|||||2268|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|4/17|n.1649C>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|6/7|n.712C>A||||||
1	891401	.	G	A	362.63	.	AC=8;ANN=A|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|5/18|c.608-8C>T||||||,A|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|3/16|n.1614-8C>T||||||,A|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|5/6|n.677-8C>T||||||,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||4566|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||2225|
1	891443	.	C	T	108.26	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||4524|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||2183|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|5/18|c.607+32G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|3/16|n.1613+32G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|5/6|n.676+32G>A||||||
1	891479	.	A	G	222.95	.	AC=1;ANN=G|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|5/19|c.603T>C|p.Ser201Ser|653/2790|603/2250|201/749||,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>G|||||4488|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||2147|,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|3/17|n.1609T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|5/7|n.672T>C||||||
1	891620	.	C	A	87.12	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>A|||||4347|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||2006|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-25G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-25G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-25G>T||||||
1	891659	rs116557519	G	A	449.07	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||4308|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||1967|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-64C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-64C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-64C>T||||||
1	891689	.	C	T	11.39	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||4278|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1937|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-94G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-94G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-94G>A||||||
1	891719	.	G	A	63.62	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||4248|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||1907|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-124C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-124C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-124C>T||||||
1	891759	.	A	G	37.66	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>G|||||4208|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||1867|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-164T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-164T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-164T>C||||||
1	891872	rs112053507	G	C	53.58	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>C|||||4095|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>C|||||4957|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||1754|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-277C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-277C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-277C>G||||||
1	891878	.	T	C	46.98	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>C|||||4089|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>C|||||4951|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||1748|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-283A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-283A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-283A>G||||||
1	891898	rs112164716	T	C	1574.16	.	AC=38;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>C|||||4069|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>C|||||4931|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||1728|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.487-303A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1493-303A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.556-303A>G||||||
1	891945	rs13303106	A	G	25414.06	.	AC=546;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>G|||||4022|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>G|||||4884|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||1681|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.486+329T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1492+329T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.555+329T>C||||||
1	892012	rs58879223	C	T	6868.26	.	AC=105;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3955|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4817|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1614|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.486+262G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1492+262G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.555+262G>A||||||
1	892036	.	G	A	5.72	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||3931|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||4793|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||1590|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.486+238C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1492+238C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.555+238C>T||||||
1	892095	rs17160703	C	T	2371.12	.	AC=58;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3872|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4734|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1531|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.486+179G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1492+179G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.555+179G>A||||||
1	892141	rs114811360	C	T	22.87	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3826|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4688|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1485|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.486+133G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1492+133G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.555+133G>A||||||
1	892226	.	C	T	65.66	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3741|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4603|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1400|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.486+48G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1492+48G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.555+48G>A||||||
1	892237	.	C	A	116.52	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>A|||||3730|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>A|||||4592|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||1389|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/18|c.486+37G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/16|n.1492+37G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/6|n.555+37G>T||||||
1	892380	.	G	A	21.57	.	AC=2;ANN=A|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/19|c.380C>T|p.Ala127Val|430/2790|380/2250|127/749||,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||3587|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||4449|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||1246|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/17|n.1386C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/7|n.449C>T||||||
1	892381	.	C	T	7.45	.	AC=2;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|4/19|c.379G>A|p.Ala127Thr|429/2790|379/2250|127/749||,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3586|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4448|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1245|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|2/17|n.1385G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|4/7|n.448G>A||||||
1	892460	rs41285802	G	C	6410.39	.	AC=110;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>C|||||3507|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>C|||||4369|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||1166|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|3/18|c.354+19C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/16|n.1360+19C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|3/6|n.423+19C>G||||||
1	892471	rs41285804	G	A	2100.12	.	AC=42;ANN=A|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|3/18|c.354+8C>T||||||,A|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/16|n.1360+8C>T||||||,A|splice_region_variant&intron_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|3/6|n.423+8C>T||||||,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||3496|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||4358|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||1155|
1	892512	.	C	T	49.39	.	AC=1;ANN=T|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|3/19|c.321G>A|p.Glu107Glu|371/2790|321/2250|107/749||,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3455|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4317|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1114|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1327G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|3/7|n.390G>A||||||
1	892539	.	G	A	60.71	.	AC=2;ANN=A|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|3/19|c.294C>T|p.Ser98Ser|344/2790|294/2250|98/749||,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||3428|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||4290|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||1087|,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1300C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|3/7|n.363C>T||||||
1	892551	rs62639969	C	T	82.07	.	AC=8;ANN=T|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|3/19|c.282G>A|p.Leu94Leu|332/2790|282/2250|94/749||,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3416|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4278|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1075|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1288G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|3/7|n.351G>A||||||
1	892569	rs41285806	C	T	197.38	.	AC=5;ANN=T|synonymous_variant|LOW|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|3/19|c.264G>A|p.Gln88Gln|314/2790|264/2250|88/749||,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3398|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4260|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||1057|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1270G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|3/7|n.333G>A||||||
1	892648	.	C	T	73.72	.	AC=3;ANN=T|missense_variant|MODERATE|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|3/19|c.185G>A|p.Arg62His|235/2790|185/2250|62/749||,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3319|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4181|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||978|,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1191G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|3/7|n.254G>A||||||
1	892673	.	C	T	10.56	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3294|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4156|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||953|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-20G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-20G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1166G>A||||||
1	892724	rs116643124	C	T	46.92	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3243|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4105|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||902|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-71G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-71G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1115G>A||||||
1	892727	.	T	C	69.51	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>C|||||3240|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>C|||||4102|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||899|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-74A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-74A>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1112A>G||||||
1	892745	rs13303227	G	A	56685.07	.	AC=918;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||3222|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||4084|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||881|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-92C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-92C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1094C>T||||||
1	892776	.	G	A	43.5	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||3191|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||4053|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||850|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-123C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-123C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1063C>T||||||
1	892780	rs116434423	C	T	424.75	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||3187|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||4049|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||846|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-127G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-127G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.1059G>A||||||
1	892869	.	T	G	11.52	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>G|||||3098|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>G|||||3960|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>C|||||757|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-216A>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-216A>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.970A>C||||||
1	892873	.	C	A	280.46	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>A|||||3094|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>A|||||3956|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||753|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-220G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-220G>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.966G>T||||||
1	892971	.	T	C	213.1	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>C|||||2996|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>C|||||3858|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||655|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-318A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-318A>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.868A>G||||||
1	893002	.	A	G	53.47	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>G|||||2965|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>G|||||3827|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||624|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-349T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-349T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.837T>C||||||
1	893041	.	G	C	27.5	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>C|||||2926|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>C|||||3788|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||585|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-388C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-388C>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.798C>G||||||
1	893048	.	T	A	83.92	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>A|||||2919|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>A|||||3781|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>T|||||578|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-395A>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-395A>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.791A>T||||||
1	893137	.	C	T	149.6	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||2830|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||3692|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||4970|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||489|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-484G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-484G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.702G>A||||||
1	893161	rs115345247	C	A	85.26	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>A|||||2806|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>A|||||3668|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>A|||||4946|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||465|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-508G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-508G>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.678G>T||||||
1	893163	rs76915892	G	A	124.59	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2804|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3666|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4944|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||463|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-510C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-510C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.676C>T||||||
1	893194	.	G	C	248.06	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>C|||||2773|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>C|||||3635|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>C|||||4913|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>G|||||432|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-541C>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-541C>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.645C>G||||||
1	893196	.	G	A	51.03	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2771|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3633|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4911|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||430|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-543C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-543C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.643C>T||||||
1	893237	.	C	A	40.84	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>A|||||2730|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>A|||||3592|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>A|||||4870|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>T|||||389|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-584G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-584G>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.602G>T||||||
1	893280	rs4970371	G	A	60881.45	.	AC=961;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2687|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3549|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4827|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||346|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-627C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-627C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.559C>T||||||
1	893287	.	C	T	13.4	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||2680|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||3542|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||4820|,T|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878G>A|||||339|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-634G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-634G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.552G>A||||||
1	893326	.	G	A	65.43	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2641|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3503|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4781|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||300|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-673C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-673C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.513C>T||||||
1	893338	.	T	C	46.85	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>C|||||2629|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>C|||||3491|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2T>C|||||4769|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||288|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-685A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-685A>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.501A>G||||||
1	893357	.	T	C	62.53	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>C|||||2610|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>C|||||3472|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2T>C|||||4750|,C|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878A>G|||||269|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-704A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-704A>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.482A>G||||||
1	893385	.	G	A	177.31	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2582|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3444|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4722|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||241|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-732C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-732C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.454C>T||||||
1	893415	.	G	A	42.33	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2552|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3414|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4692|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||211|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.180-762C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.249-762C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.424C>T||||||
1	893510	.	G	A	24.79	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2457|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3319|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4597|,A|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878C>T|||||116|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+799C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+799C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.329C>T||||||
1	893615	rs75254714	A	G	5548.72	.	AC=99;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>G|||||2352|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>G|||||3214|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2A>G|||||4492|,G|downstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.*878T>C|||||11|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+694T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+694T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.224T>C||||||
1	893631	rs6605069	A	G	57928.27	.	AC=944;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>G|||||2336|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>G|||||3198|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2A>G|||||4476|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+678T>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+678T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.208T>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.873T>C||||||
1	893636	.	T	C	72.47	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>C|||||2331|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>C|||||3193|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2T>C|||||4471|,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+673A>G||||||,C|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+673A>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.203A>G||||||,C|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.868A>G||||||
1	893685	.	T	A	38.91	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108T>A|||||2282|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1T>A|||||3144|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2T>A|||||4422|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+624A>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+624A>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.154A>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.819A>T||||||
1	893719	rs4970445	G	A	37968.04	.	AC=725;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2248|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||3110|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4388|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+590C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+590C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.120C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.785C>T||||||
1	893725	.	C	T	80.25	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||2242|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||3104|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||4382|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+584G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+584G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.114G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.779G>A||||||
1	893784	.	C	A	92.26	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>A|||||2183|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>A|||||3045|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>A|||||4323|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+525G>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+525G>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.55G>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.720G>T||||||
1	893835	.	G	A	90.81	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2132|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||2994|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4272|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+474C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+474C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron|1/17|n.4C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.669C>T||||||
1	893876	.	C	G	30.22	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>G|||||2091|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>C|||||38|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>G|||||2953|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>G|||||4231|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+433G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+433G>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.628G>C||||||
1	893882	rs7512193	G	A	874.65	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||2085|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||44|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||2947|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||4225|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+427C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+427C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.622C>T||||||
1	893981	rs28415373	C	T	151.09	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||1986|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||143|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||2848|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||4126|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||4951|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+328G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+328G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.523G>A||||||
1	893994	.	C	T	97.0	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||1973|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||156|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||2835|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||4113|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||4938|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+315G>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+315G>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.510G>A||||||
1	894000	rs113807053	C	G	6.27	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>G|||||1967|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>C|||||162|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>G|||||2829|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>G|||||4107|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>G|||||4932|,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+309G>C||||||,G|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+309G>C||||||,G|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.504G>C||||||
1	894041	.	G	T	35.49	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>T|||||1926|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>A|||||203|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>T|||||2788|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>T|||||4066|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>T|||||4891|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+268C>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+268C>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.463C>A||||||
1	894102	.	A	T	312.46	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>T|||||1865|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1T>A|||||264|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>T|||||2727|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2A>T|||||4005|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1A>T|||||4830|,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+207T>A||||||,T|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+207T>A||||||,T|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.402T>A||||||
1	894168	.	G	A	81.87	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||1799|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||330|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||2661|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||3939|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||4764|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+141C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+141C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.336C>T||||||
1	894170	.	G	A	349.43	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||1797|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||332|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||2659|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||3937|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||4762|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|2/18|c.179+139C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|2/6|n.248+139C>T||||||,A|non_coding_exon_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|2/2|n.334C>T||||||
1	894519	rs115438739	G	A	194.65	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||1448|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||681|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||2310|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||3588|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||4413|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|1/18|c.27-58C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|1/6|n.96-58C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|1/1|n.43-58C>T||||||
1	894573	rs13303010	G	A	23671.94	.	AC=554;ANN=A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||1394|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||735|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||2256|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||3534|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||4359|,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding|1/18|c.26+22C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript|1/6|n.95+22C>T||||||,A|intron_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron|1/1|n.42+22C>T||||||
1	894719	.	C	T	129.02	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||49|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||1248|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||881|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||30|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||83|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||2110|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||3388|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||4213|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:894606_894755|||||||||,T|intergenic_region|MODIFIER|NOC2L-KLHL17|ENSG00000188976-ENSG00000187961|intergenic_region|ENSG00000188976-ENSG00000187961|||||||||
1	895268	.	C	T	144.95	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||598|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108C>T|||||699|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||1430|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||579|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||632|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||1561|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||2839|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||3664|,T|intergenic_region|MODIFIER|NOC2L-KLHL17|ENSG00000188976-ENSG00000187961|intergenic_region|ENSG00000188976-ENSG00000187961|||||||||
1	895706	rs13303327	G	A	11966.87	.	AC=359;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||1036|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>A|||||261|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||1868|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||1017|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||1070|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||1123|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||2401|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||3226|,A|intergenic_region|MODIFIER|NOC2L-KLHL17|ENSG00000188976-ENSG00000187961|intergenic_region|ENSG00000188976-ENSG00000187961|||||||||
1	895792	.	G	C	19.71	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>G|||||1122|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>C|||||175|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>G|||||1954|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>G|||||1103|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>G|||||1156|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>C|||||1037|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>C|||||2315|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>C|||||3140|,C|intergenic_region|MODIFIER|NOC2L-KLHL17|ENSG00000188976-ENSG00000187961|intergenic_region|ENSG00000188976-ENSG00000187961|||||||||
1	895820	rs115302202	G	C	717.34	.	AC=44;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>G|||||1150|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108G>C|||||147|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>G|||||1982|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>G|||||1131|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>G|||||1184|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>C|||||1009|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>C|||||2287|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>C|||||3112|,C|intergenic_region|MODIFIER|NOC2L-KLHL17|ENSG00000188976-ENSG00000187961|intergenic_region|ENSG00000188976-ENSG00000187961|||||||||
1	895889	rs72891151	A	T	562.94	.	AC=29;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51T>A|||||1219|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.-108A>T|||||78|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1T>A|||||2051|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1T>A|||||1200|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1T>A|||||1253|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>T|||||940|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2A>T|||||2218|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1A>T|||||3043|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:895846_895995|||||||||,T|intergenic_region|MODIFIER|NOC2L-KLHL17|ENSG00000188976-ENSG00000187961|intergenic_region|ENSG00000188976-ENSG00000187961|||||||||
1	896064	rs113034360	C	G	129.21	.	AC=8;ANN=G|5_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|1/12|c.-10C>G|||||10|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>C|||||1394|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>C|||||2226|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>C|||||1375|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>C|||||1428|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>G|||||765|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>G|||||2043|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>G|||||2868|
1	896163	.	A	C	12.64	.	AC=1;ANN=C|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|1/12|c.90A>C|p.Pro30Pro|197/2560|90/1929|30/642||,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51T>G|||||1493|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1T>G|||||2325|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1T>G|||||1474|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1T>G|||||1527|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>C|||||666|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2A>C|||||1944|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1A>C|||||2769|
1	896271	rs112905931	C	T	2151.19	.	AC=122;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||1601|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||2433|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||1582|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||1635|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||558|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||1836|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||2661|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|1/11|c.107+91C>T||||||
1	896333	.	C	T	283.45	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||1663|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||2495|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||1644|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||1697|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||496|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||1774|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||2599|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|1/11|c.107+153C>T||||||
1	896414	.	C	T	7.95	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||1744|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||2576|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||1725|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||1778|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1C>T|||||415|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||1693|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||2518|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|1/11|c.107+234C>T||||||
1	896476	rs28393498	A	G	7084.22	.	AC=274;ANN=G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51T>C|||||1806|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1T>C|||||2638|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1T>C|||||1787|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1T>C|||||1840|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1A>G|||||353|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2A>G|||||1631|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1A>G|||||2456|,G|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|1/11|c.108-197A>G||||||
1	896756	.	G	A	132.45	.	AC=2;ANN=A|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|2/12|c.191G>A|p.Gly64Asp|298/2560|191/1929|64/642||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||2086|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||2918|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||2067|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||2120|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.-1G>A|||||73|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||1351|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||2176|
1	896950	rs74045023	C	A	1001.64	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>T|||||2280|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>A|||||4932|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>T|||||3112|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>T|||||2261|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>T|||||2314|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>A|||||1157|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>A|||||1982|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>A|||||4927|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>A|||||4932|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|2/11|c.367+18C>A||||||,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|1/2|n.122C>A||||||
1	897032	.	A	G	89.78	.	AC=2;ANN=G|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|3/12|c.391A>G|p.Thr131Ala|498/2560|391/1929|131/642||,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51T>C|||||2362|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>G|||||4850|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1T>C|||||3194|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1T>C|||||2343|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1T>C|||||2396|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2A>G|||||1075|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1A>G|||||1900|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>G|||||4845|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>G|||||4850|,G|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|1/2|n.204A>G||||||
1	897058	.	C	T	7.02	.	AC=1;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|3/12|c.417C>T|p.Asp139Asp|524/2560|417/1929|139/642||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||2388|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4824|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3220|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||2369|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||2422|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||1049|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1874|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4819|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4824|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|1/2|n.230C>T||||||
1	897133	.	G	A	102.03	.	AC=7;ANN=A|splice_region_variant&intron_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|3/11|c.489+3G>A||||||,A|splice_region_variant&intron_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|1/1|n.302+3G>A||||||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||2463|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||4749|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||3295|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||2444|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||2497|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||974|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||1799|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||4744|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||4749|
1	897216	.	C	T	15.65	.	AC=1;ANN=T|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/12|c.500C>T|p.Pro167Leu|607/2560|500/1929|167/642||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||2546|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4666|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3378|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||2527|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||2580|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||891|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1716|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4661|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4666|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.313C>T||||||
1	897286	rs79271696	C	T	7.4	.	AC=2;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/12|c.570C>T|p.Asp190Asp|677/2560|570/1929|190/642||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||2616|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4596|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3448|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||2597|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||2650|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||821|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1646|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4591|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4596|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.383C>T||||||
1	897325	rs4970441	G	C	32058.48	.	AC=698;ANN=C|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/12|c.609G>C|p.Ala203Ala|716/2560|609/1929|203/642||,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>G|||||2655|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||4557|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>G|||||3487|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>G|||||2636|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>G|||||2689|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>C|||||782|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>C|||||1607|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||4552|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||4557|,C|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.422G>C||||||
1	897337	rs115985665	C	T	241.49	.	AC=7;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/12|c.621C>T|p.Ser207Ser|728/2560|621/1929|207/642||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||2667|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4545|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3499|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||2648|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||2701|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||770|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1595|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4540|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4545|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.434C>T||||||
1	897440	.	G	A	34.89	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||2770|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||4442|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||3602|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||2751|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||2804|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||667|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||1492|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||4437|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||4442|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/11|c.711+13G>A||||||,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.537G>A||||||
1	897564	rs13303229	T	C	30146.9	.	AC=731;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51A>G|||||2894|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>C|||||4318|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1A>G|||||3726|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1A>G|||||2875|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1A>G|||||2928|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2T>C|||||543|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1T>C|||||1368|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>C|||||4313|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>C|||||4318|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/11|c.711+137T>C||||||,C|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.661T>C||||||
1	897641	.	C	T	52.33	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||2971|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4241|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3803|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||2952|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3005|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||466|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1291|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4236|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4241|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/11|c.712-94C>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.738C>T||||||
1	897726	rs115528693	C	T	76.38	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3056|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4156|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3888|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3037|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3090|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||381|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1206|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4151|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4156|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/11|c.712-9C>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.823C>T||||||
1	897730	rs7549631	C	T	2047.28	.	AC=59;ANN=T|splice_region_variant&intron_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|4/11|c.712-5C>T||||||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3060|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4152|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3892|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3041|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3094|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||377|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1202|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4147|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4152|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.827C>T||||||
1	897738	rs6696971	C	T	2932.63	.	AC=80;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|5/12|c.715C>T|p.Leu239Leu|822/2560|715/1929|239/642||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3068|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4144|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||3900|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3049|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3102|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||369|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1194|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||4139|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4144|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron|2/2|n.835C>T||||||
1	897879	rs79008338	C	T	1208.79	.	AC=53;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3209|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||4003|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||4041|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3190|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3243|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||228|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||1053|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||3998|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||4003|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||21|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|5/11|c.828+28C>T||||||
1	897996	.	G	A	59.02	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||3326|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||3886|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||4158|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||3307|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||3360|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2G>A|||||111|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||936|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||3881|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||3886|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||138|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|5/11|c.829-88G>A||||||
1	898045	.	C	T	16.6	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3375|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||3837|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||4207|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3356|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3409|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.-2C>T|||||62|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||887|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||3832|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||3837|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||187|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:898026_898175|||||||||,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|5/11|c.829-39C>T||||||
1	898119	rs79110607	C	T	353.21	.	AC=12;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|6/12|c.864C>T|p.Arg288Arg|971/2560|864/1929|288/642||,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3449|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||3763|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||4281|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3430|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3483|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||813|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||3758|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||3763|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||261|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:898026_898175|||||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|1/6|n.12C>T||||||
1	898323	rs6605071	T	C	29267.68	.	AC=671;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51A>G|||||3653|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>C|||||3559|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1A>G|||||4485|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1A>G|||||3634|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1A>G|||||3687|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1T>C|||||609|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>C|||||3554|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>C|||||3559|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>C|||||465|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|6/11|c.1042+26T>C||||||,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|1/5|n.190+26T>C||||||
1	898466	.	C	T	138.7	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3796|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||3416|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||4628|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3777|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3830|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||466|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||3411|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||3416|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||608|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|6/11|c.1043-23C>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|2/6|n.245C>T||||||
1	898467	rs41285808	C	T	1568.32	.	AC=57;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||3797|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||3415|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>A|||||4629|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||3778|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||3831|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||465|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||3410|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||3415|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||609|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|6/11|c.1043-22C>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|2/6|n.246C>T||||||
1	898511	.	C	A	8.12	.	AC=1;ANN=A|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|7/12|c.1065C>A|p.Ile355Ile|1172/2560|1065/1929|355/642||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>T|||||3841|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>A|||||3371|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1G>T|||||4673|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>T|||||3822|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>T|||||3875|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>A|||||421|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>A|||||3366|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>A|||||3371|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>A|||||653|,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|2/6|n.290C>A||||||
1	898542	.	A	G	51.1	.	AC=1;ANN=G|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|7/12|c.1096A>G|p.Thr366Ala|1203/2560|1096/1929|366/642||,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51T>C|||||3872|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>G|||||3340|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1T>C|||||4704|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1T>C|||||3853|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1T>C|||||3906|,G|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1A>G|||||390|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>G|||||3335|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>G|||||3340|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>G|||||684|,G|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|2/6|n.321A>G||||||
1	898549	.	G	A	8.6	.	AC=1;ANN=A|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|7/12|c.1103G>A|p.Arg368His|1210/2560|1103/1929|368/642||,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||3879|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||3333|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000477976|retained_intron||n.-1C>T|||||4711|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||3860|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||3913|,A|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>A|||||383|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||3328|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||3333|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||691|,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|2/6|n.328G>A||||||
1	898852	rs117269332	C	T	1230.26	.	AC=48;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/12|c.1323C>T|p.Ala441Ala|1430/2560|1323/1929|441/642||,T|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/6|n.*86C>T|||||86|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||4182|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||3030|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||4163|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||4216|,T|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1C>T|||||80|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||3025|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||3030|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||994|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/6|n.*86C>T||||||
1	898914	rs114880602	G	C	208.32	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>G|||||4244|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||2968|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>G|||||4225|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>G|||||4278|,C|upstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.-1G>C|||||18|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||2963|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||2968|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||1056|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/11|c.1355+30G>C||||||,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/5|n.*118+30G>C||||||
1	898934	.	G	A	86.75	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||4264|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||2948|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||4245|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||4298|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||2943|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||2948|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||1076|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/11|c.1355+50G>A||||||,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/5|n.*118+50G>A||||||,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.3G>A||||||
1	898959	.	G	A	54.37	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||4289|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||2923|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||4270|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||4323|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||2918|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||2923|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||1101|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/11|c.1355+75G>A||||||,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/5|n.*118+75G>A||||||,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.28G>A||||||
1	898993	.	G	A	6.96	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||4323|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||2889|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||4304|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||4357|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||2884|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||2889|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||1135|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/11|c.1355+109G>A||||||,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/5|n.*118+109G>A||||||,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.62G>A||||||
1	899000	rs3813184	C	T	2971.93	.	AC=85;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||4330|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||2882|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||4311|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||4364|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||2877|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||2882|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||1142|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/11|c.1355+116C>T||||||,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/5|n.*118+116C>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.69C>T||||||
1	899010	.	C	T	59.18	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||4340|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||2872|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||4321|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||4374|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||2867|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||2872|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||1152|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/11|c.1355+126C>T||||||,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/5|n.*118+126C>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.79C>T||||||
1	899195	.	A	C	8.93	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51T>G|||||4525|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>C|||||2687|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1T>G|||||4506|,C|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1T>G|||||4559|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>C|||||2682|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>C|||||2687|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>C|||||1337|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|8/11|c.1356-105A>C||||||,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|3/5|n.*119-105A>C||||||,C|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.264A>C||||||
1	899312	.	C	T	18.44	.	AC=2;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|9/12|c.1368C>T|p.Tyr456Tyr|1475/2560|1368/1929|456/642||,T|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|4/6|n.*131C>T|||||546|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||4642|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||2570|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||4623|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||4676|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||2565|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||2570|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||1454|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|4/6|n.*131C>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.381C>T||||||
1	899336	.	G	T	14.37	.	AC=1;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|9/12|c.1392G>T|p.Thr464Thr|1499/2560|1392/1929|464/642||,T|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|4/6|n.*155G>T|||||570|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>A|||||4666|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>T|||||2546|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>A|||||4647|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>A|||||4700|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>T|||||2541|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>T|||||2546|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>T|||||1478|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|4/6|n.*155G>T||||||,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/2|n.405G>T||||||
1	899434	.	C	T	14.55	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||4764|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||2448|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||4745|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||4798|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||2443|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||2448|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||1576|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|9/11|c.1444+46C>T||||||,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|4/5|n.*207+46C>T||||||,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/1|n.457+46C>T||||||
1	899435	.	G	A	5.6	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51C>T|||||4765|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||2447|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1C>T|||||4746|,A|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1C>T|||||4799|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||2442|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||2447|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||1577|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|9/11|c.1444+47G>A||||||,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|4/5|n.*207+47G>A||||||,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|1/1|n.457+47G>A||||||
1	899537	.	A	G	43.87	.	AC=2;ANN=G|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|10/12|c.1495A>G|p.Thr499Ala|1602/2560|1495/1929|499/642||,G|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|5/6|n.*258A>G|||||771|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51T>C|||||4867|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>G|||||2345|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1T>C|||||4848|,G|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1T>C|||||4901|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>G|||||2340|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>G|||||2345|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>G|||||1679|,G|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|5/6|n.*258A>G||||||,G|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron|2/2|n.508A>G||||||
1	899634	rs114053887	C	T	202.5	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||4964|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||2248|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||4945|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000469563|retained_intron||n.-1G>A|||||4998|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||2243|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||2248|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||1776|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||90|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|10/11|c.1518+74C>T||||||,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|5/5|n.*268+87C>T||||||
1	899648	.	C	T	107.85	.	AC=14;ANN=T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000327044|protein_coding||c.-51G>A|||||4978|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||2234|,T|upstream_gene_variant|MODIFIER|NOC2L|ENSG00000188976|transcript|ENST00000487214|processed_transcript||n.-1G>A|||||4959|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||2229|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||2234|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||1790|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||104|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|10/11|c.1519-81C>T||||||,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|5/5|n.*269-81C>T||||||
1	899766	.	G	T	12.21	.	AC=1;ANN=T|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/12|c.1556G>T|p.Arg519Leu|1663/2560|1556/1929|519/642||,T|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|6/6|n.*306G>T|||||1000|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>T|||||2116|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>T|||||2111|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>T|||||2116|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>T|||||1908|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>T|||||222|,T|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|6/6|n.*306G>T||||||
1	899888	.	G	A	11.06	.	AC=1;ANN=A|missense_variant|MODERATE|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/12|c.1678G>A|p.Val560Met|1785/2560|1678/1929|560/642||,A|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|6/6|n.*428G>A|||||1122|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1994|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1989|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1994|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2030|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||344|,A|non_coding_exon_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay|6/6|n.*428G>A||||||
1	899928	rs6677386	G	C	5598.53	.	AC=251;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||1954|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||1949|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||1954|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||2070|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||18|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||384|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+18G>C||||||
1	899937	.	G	T	4538.42	.	AC=198;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>T|||||1945|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>T|||||1940|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>T|||||1945|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>T|||||2079|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>T|||||27|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>T|||||393|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+27G>T||||||
1	899938	.	G	C	4596.82	.	AC=199;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||1944|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||1939|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||1944|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||2080|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||28|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||394|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+28G>C||||||
1	899942	rs71509448	G	A	6199.25	.	AC=242;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1940|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1935|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1940|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2084|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||32|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||398|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+32G>A||||||
1	899943	.	G	C	18.47	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||1939|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||1934|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||1939|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||2085|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||33|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||399|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+33G>C||||||
1	899949	.	C	T	220.14	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1933|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1928|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1933|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2091|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||39|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||405|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+39C>T||||||
1	899989	rs6669071	A	C	5148.35	.	AC=214;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>C|||||1893|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>C|||||1888|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>C|||||1893|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>C|||||2131|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>C|||||79|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>C|||||445|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+79A>C||||||
1	900001	rs28754834	G	A	1683.22	.	AC=95;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1881|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1876|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1881|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2143|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||91|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||457|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+91G>A||||||
1	900012	.	G	A	25.06	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1870|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1865|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1870|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2154|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||102|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||468|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+102G>A||||||
1	900045	.	G	T	39.03	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>T|||||1837|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>T|||||1832|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>T|||||1837|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>T|||||2187|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>T|||||135|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>T|||||501|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+135G>T||||||
1	900046	.	G	C	45.36	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||1836|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||1831|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||1836|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||2188|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||136|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||502|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+136G>C||||||
1	900050	.	G	A	55.47	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1832|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1827|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1832|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2192|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||140|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||506|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+140G>A||||||
1	900057	.	C	T	13.64	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1825|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1820|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1825|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2199|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||147|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||513|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+147C>T||||||
1	900065	.	A	C	89.76	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>C|||||1817|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>C|||||1812|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>C|||||1817|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>C|||||2207|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>C|||||155|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>C|||||521|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+155A>C||||||
1	900095	.	C	T	85.66	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1787|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1782|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1787|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2237|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||185|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||551|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+185C>T||||||
1	900103	.	A	C	117.87	.	AC=11;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>C|||||1779|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>C|||||1774|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>C|||||1779|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>C|||||2245|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>C|||||193|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>C|||||559|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+193A>C||||||
1	900115	.	G	A	91.61	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1767|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1762|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1767|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2257|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||205|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||571|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1700+205G>A||||||
1	900133	.	C	T	90.56	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1749|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1744|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1749|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2275|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||223|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||589|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-210C>T||||||
1	900141	.	A	C	47.39	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>C|||||1741|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>C|||||1736|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>C|||||1741|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>C|||||2283|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>C|||||231|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>C|||||597|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-202A>C||||||
1	900169	.	C	T	253.51	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1713|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1708|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1713|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2311|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||259|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||625|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-174C>T||||||
1	900171	.	C	T	331.53	.	AC=28;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1711|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1706|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1711|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2313|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||261|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||627|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-172C>T||||||
1	900205	rs4970436	T	C	3176.36	.	AC=156;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>C|||||1677|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>C|||||1672|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>C|||||1677|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>C|||||2347|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||295|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>C|||||661|,C|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-138T>C||||||
1	900208	rs7414587	G	A	1270.14	.	AC=76;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1674|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1669|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1674|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2350|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||298|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||664|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-135G>A||||||
1	900252	rs114635344	G	A	696.36	.	AC=19;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1630|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1625|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1630|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2394|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||342|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||708|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-91G>A||||||
1	900285	rs4970435	C	T	25260.53	.	AC=656;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1597|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1592|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1597|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2427|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||375|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||741|,T|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-58C>T||||||
1	900286	rs4970434	A	G	27186.12	.	AC=687;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>G|||||1596|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>G|||||1591|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>G|||||1596|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>G|||||2428|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>G|||||376|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>G|||||742|,G|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-57A>G||||||
1	900298	rs71628926	C	G	74.81	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>G|||||1584|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>G|||||1579|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>G|||||1584|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>G|||||2440|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>G|||||388|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>G|||||754|,G|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-45C>G||||||
1	900319	rs80351873	G	A	1218.47	.	AC=55;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1563|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1558|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1563|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2461|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||409|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||775|,A|intron_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|11/11|c.1701-24G>A||||||
1	900397	rs111560052	C	T	1288.44	.	AC=43;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.1755C>T|p.Asn585Asn|1862/2560|1755/1929|585/642||,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1485|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1480|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1485|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2539|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||487|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||853|
1	900427	rs115741058	G	A	1362.29	.	AC=47;ANN=A|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.1785G>A|p.Glu595Glu|1892/2560|1785/1929|595/642||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1455|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1450|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1455|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2569|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||517|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||883|
1	900439	rs72891155	G	A	34.87	.	AC=3;ANN=A|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.1797G>A|p.Pro599Pro|1904/2560|1797/1929|599/642||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1443|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1438|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1443|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2581|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||529|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||895|
1	900505	rs28705211	G	C	5803.02	.	AC=139;ANN=C|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.1863G>C|p.Val621Val|1970/2560|1863/1929|621/642||,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||1377|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||1372|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||1377|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||2647|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||595|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||961|
1	900562	.	C	T	10.04	.	AC=1;ANN=T|synonymous_variant|LOW|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.1920C>T|p.Thr640Thr|2027/2560|1920/1929|640/642||,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||1320|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||1315|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||1320|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||2704|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||652|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||1018|
1	900679	rs61531461	A	G	210.12	.	AC=11;ANN=G|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.*108A>G|||||108|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>G|||||1203|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>G|||||1198|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>G|||||1203|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>G|||||2821|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>G|||||769|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>G|||||1135|
1	900730	rs3935066	G	A	40140.18	.	AC=794;ANN=A|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.*159G>A|||||159|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||1152|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||1147|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||1152|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||2872|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||820|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||1186|
1	900953	rs115880359	C	A	284.86	.	AC=14;ANN=A|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.*382C>A|||||382|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>A|||||929|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>A|||||924|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>A|||||929|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>A|||||3095|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>A|||||1043|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>A|||||1409|
1	900972	rs9697711	T	G	37741.37	.	AC=784;ANN=G|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.*401T>G|||||401|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>G|||||910|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>G|||||905|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>G|||||910|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>G|||||3114|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>G|||||1062|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>G|||||1428|
1	901023	rs13303351	T	C	35274.25	.	AC=756;ANN=C|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.*452T>C|||||452|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>C|||||859|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>C|||||854|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>C|||||859|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>C|||||3165|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||1113|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>C|||||1479|
1	901035	rs116837742	C	T	300.57	.	AC=12;ANN=T|3_prime_UTR_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding|12/12|c.*464C>T|||||464|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||847|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||842|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||847|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||3177|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||1125|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||1491|
1	901113	rs57064333	T	C	1172.62	.	AC=43;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>C|||||769|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>C|||||764|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>C|||||769|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||18|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>C|||||3255|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||1203|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>C|||||1569|,C|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901135	rs75557209	C	T	35.78	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||747|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||742|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||747|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||40|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||3277|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||1225|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||1591|,T|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901203	rs75102264	T	C	29.83	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>C|||||679|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>C|||||674|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>C|||||679|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||108|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>C|||||3345|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||1293|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>C|||||1659|,C|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901337	rs72891160	T	G	566.4	.	AC=32;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>G|||||545|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>G|||||540|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>G|||||545|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>G|||||4918|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>G|||||242|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>G|||||3479|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>G|||||1427|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>G|||||1793|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:901206_901355|||||||||,G|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901550	rs115975765	C	G	84.38	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>G|||||332|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>G|||||327|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>G|||||332|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>G|||||4705|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>G|||||455|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>G|||||3692|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>G|||||1640|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>G|||||2006|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:901486_901635|||||||||,G|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901559	rs13303160	G	A	25988.18	.	AC=596;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>A|||||323|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>A|||||318|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>A|||||323|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||4696|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||464|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||3701|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||1649|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||2015|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:901486_901635|||||||||,A|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901591	.	T	C	14.36	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31T>C|||||291|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36T>C|||||286|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31T>C|||||291|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>C|||||4664|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||496|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>C|||||3733|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||1681|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>C|||||2047|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:901486_901635|||||||||,C|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901607	rs13302996	C	G	23183.75	.	AC=671;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>G|||||275|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>G|||||270|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>G|||||275|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>G|||||4648|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>G|||||512|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>G|||||3749|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>G|||||1697|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>G|||||2063|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:901486_901635|||||||||,G|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901624	rs78969914	C	T	158.86	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31C>T|||||258|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36C>T|||||253|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31C>T|||||258|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||4631|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||529|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||3766|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||1714|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||2080|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:901486_901635|||||||||,T|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901652	rs2879814	A	G	33017.87	.	AC=750;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>G|||||230|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>G|||||225|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>G|||||230|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>G|||||4603|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>G|||||557|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>G|||||3794|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>G|||||1742|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>G|||||2108|,G|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901744	.	A	G	35.73	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31A>G|||||138|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36A>G|||||133|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31A>G|||||138|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>G|||||4511|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>G|||||649|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955A>G|||||3886|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>G|||||1834|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>G|||||2200|,G|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901806	rs2879815	G	C	7950.21	.	AC=232;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.-31G>C|||||76|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.-36G>C|||||71|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.-31G>C|||||76|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>C|||||4449|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>C|||||711|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||3948|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||1896|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||2262|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:901746_901895|||||||||,C|intergenic_region|MODIFIER|KLHL17-PLEKHN1|ENSG00000187961-ENSG00000187583|intergenic_region|ENSG00000187961-ENSG00000187583|||||||||
1	901901	.	C	T	19.29	.	AC=2;ANN=T|5_prime_UTR_premature_start_codon_gain_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/15|c.-11C>T||||||,T|5_prime_UTR_premature_start_codon_gain_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/16|c.-11C>T||||||,T|5_prime_UTR_premature_start_codon_gain_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/15|c.-11C>T||||||,T|5_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/15|c.-11C>T|||||11|,T|5_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/16|c.-11C>T|||||11|,T|5_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/15|c.-11C>T|||||11|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||4354|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||806|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||4043|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||1991|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||2357|
1	901922	rs62639980	G	A,C	402.93	.	AC=10;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/15|c.11G>A|p.Ser4Asn|41/2455|11/1992|4/663||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/15|c.11G>C|p.Ser4Thr|41/2455|11/1992|4/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/16|c.11G>A|p.Ser4Asn|46/2404|11/1836|4/611||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/16|c.11G>C|p.Ser4Thr|46/2404|11/1836|4/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/15|c.11G>A|p.Ser4Asn|41/2194|11/1731|4/576||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/15|c.11G>C|p.Ser4Thr|41/2194|11/1731|4/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||4333|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>C|||||4333|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||827|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>C|||||827|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||4064|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>C|||||4064|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||2012|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||2012|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||2378|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||2378|
1	901923	.	C	A	399.87	.	AC=12;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/15|c.12C>A|p.Ser4Arg|42/2455|12/1992|4/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/16|c.12C>A|p.Ser4Arg|47/2404|12/1836|4/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/15|c.12C>A|p.Ser4Arg|42/2194|12/1731|4/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>A|||||4332|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>A|||||828|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>A|||||4065|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>A|||||2013|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>A|||||2379|
1	902024	.	G	A	81.23	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||4231|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||929|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||4166|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||2114|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||2480|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/14|c.83+30G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/15|c.83+30G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/14|c.83+30G>A||||||
1	902025	.	C	A,T	91.99	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>A|||||4230|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||4230|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>A|||||930|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||930|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>A|||||4167|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||4167|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>A|||||2115|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||2115|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>A|||||2481|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||2481|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/14|c.83+31C>A||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/14|c.83+31C>T||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/15|c.83+31C>A||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/15|c.83+31C>T||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/14|c.83+31C>A||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/14|c.83+31C>T||||||
1	902037	.	C	T	7.56	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||4218|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||942|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||4179|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||2127|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||2493|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/14|c.83+43C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/15|c.83+43C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/14|c.83+43C>T||||||
1	902069	rs116147894	T	C	731.13	.	AC=44;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>C|||||4186|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||974|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955T>C|||||4211|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||2159|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515T>C|||||2525|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:902066_902215|||||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|1/14|c.84-15T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|1/15|c.84-15T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|1/14|c.84-15T>C||||||
1	902108	rs62639981	C	T	114.04	.	AC=6;ANN=T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/15|c.108C>T|p.Ala36Ala|138/2455|108/1992|36/663||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/16|c.108C>T|p.Ala36Ala|143/2404|108/1836|36/611||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/15|c.108C>T|p.Ala36Ala|138/2194|108/1731|36/576||,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||4147|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||1013|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||4250|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||2198|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||2564|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:902066_902215|||||||||
1	902128	rs28499371	C	T	695.71	.	AC=40;ANN=T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/15|c.128C>T|p.Ala43Val|158/2455|128/1992|43/663||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/16|c.128C>T|p.Ala43Val|163/2404|128/1836|43/611||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/15|c.128C>T|p.Ala43Val|158/2194|128/1731|43/576||,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||4127|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||1033|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||4270|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||2218|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||2584|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:902066_902215|||||||||
1	902288	rs77359280	G	A	672.29	.	AC=33;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||3967|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||1193|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||4430|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||2378|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||2744|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+105G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+105G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+105G>A||||||
1	902407	.	C	A	125.17	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>A|||||3848|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>A|||||1312|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>A|||||4549|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>A|||||2497|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>A|||||2863|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:902306_902455|||||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+224C>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+224C>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+224C>A||||||
1	902438	.	C	T	40.8	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||3817|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||1343|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>T|||||4580|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||2528|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||2894|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:902306_902455|||||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+255C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+255C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+255C>T||||||
1	902525	rs28570376	G	A	171.64	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||3730|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||1430|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955G>A|||||4667|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||2615|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||2981|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+342G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+342G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+342G>A||||||
1	902749	rs113967711	C	G	1014.37	.	AC=60;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>G|||||3506|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>G|||||1654|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>G|||||4891|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>G|||||2839|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>G|||||3205|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+566C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+566C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+566C>G||||||
1	902764	rs80125161	C	G	523.98	.	AC=58;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>G|||||3491|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>G|||||1669|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000463212|retained_intron||n.*955C>G|||||4906|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>G|||||2854|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>G|||||3220|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+581C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+581C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+581C>G||||||
1	902997	rs7524174	G	A	41555.7	.	AC=742;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||3258|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||1902|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||3087|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||3453|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+814G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+814G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+814G>A||||||
1	903027	.	C	T	91.86	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||3228|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||1932|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||3117|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||3483|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+844C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+844C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+844C>T||||||
1	903104	rs6696281	C	T	14528.0	.	AC=269;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||3151|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||2009|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||3194|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||3560|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+921C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+921C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+921C>T||||||
1	903113	rs28529599	C	T	724.76	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||3142|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||2018|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||3203|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||3569|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+930C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+930C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+930C>T||||||
1	903160	.	G	C	184.92	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>C|||||3095|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>C|||||2065|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||3250|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||3616|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+977G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+977G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+977G>C||||||
1	903245	rs28690976	A	G	23897.45	.	AC=429;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>G|||||3010|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>G|||||2150|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463A>G|||||3335|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515A>G|||||3701|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+1062A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+1062A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+1062A>G||||||
1	903258	.	G	A	82.19	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||2997|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||2163|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||3348|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||3714|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+1075G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+1075G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+1075G>A||||||
1	903317	.	C	G	132.78	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>G|||||2938|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>G|||||2222|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>G|||||3407|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>G|||||3773|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+1134C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+1134C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+1134C>G||||||
1	903321	rs6669800	G	A	38501.11	.	AC=772;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||2934|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||2226|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||3411|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||3777|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+1138G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+1138G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+1138G>A||||||
1	903426	rs6696609	C	T	14360.49	.	AC=329;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||2829|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||2331|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||3516|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||3882|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+1243C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+1243C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+1243C>T||||||
1	903467	.	G	A	46.69	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||2788|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||2372|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||3557|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||3923|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+1284G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+1284G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+1284G>A||||||
1	903694	.	G	A	85.4	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||2561|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||2599|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||3784|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||4150|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.183+1511G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.183+1511G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.183+1511G>A||||||
1	903993	rs111304565	G	A	445.67	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||2262|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||4899|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||2898|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||4083|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||4449|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-1664G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-1664G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-1664G>A||||||
1	904098	.	G	C	24.16	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>C|||||2157|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>C|||||4794|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>C|||||3003|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>C|||||4188|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>C|||||4554|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-1559G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-1559G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-1559G>C||||||
1	904165	rs28391282	G	A	8438.06	.	AC=124;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||2090|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||4727|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3070|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||4255|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||4621|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-1492G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-1492G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-1492G>A||||||
1	904250	rs72891167	G	A	216.85	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||2005|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||4642|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3155|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||4340|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515G>A|||||4706|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-1407G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-1407G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-1407G>A||||||
1	904355	rs28695703	C	T	8767.23	.	AC=128;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||1900|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||4537|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||3260|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>T|||||4445|,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000481067|retained_intron||n.*515C>T|||||4811|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-1302C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-1302C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-1302C>T||||||
1	904628	rs28562326	G	A	13030.74	.	AC=121;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1627|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||4264|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3533|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||4718|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-1029G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-1029G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-1029G>A||||||
1	904715	rs115593852	G	A	499.3	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1540|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||4177|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3620|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||4805|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-942G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-942G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-942G>A||||||
1	904732	.	T	C	215.8	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>C|||||1523|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||4160|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||3637|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||4822|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-925T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-925T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-925T>C||||||
1	904752	rs35241590	T	C	12837.16	.	AC=121;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>C|||||1503|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||4140|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||3657|,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463T>C|||||4842|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-905T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-905T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-905T>C||||||
1	904771	.	C	G	92.19	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>G|||||1484|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>G|||||4121|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>G|||||3676|,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463C>G|||||4861|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-886C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-886C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-886C>G||||||
1	904835	.	G	A	86.13	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1420|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||4057|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3740|,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000466300|nonsense_mediated_decay||n.*463G>A|||||4925|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-822G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-822G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-822G>A||||||
1	904914	.	G	A	68.41	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1341|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||3978|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3819|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-743G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-743G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-743G>A||||||
1	904928	.	G	A	176.14	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1327|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||3964|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3833|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-729G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-729G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-729G>A||||||
1	904942	rs6667868	A	G	38968.8	.	AC=305;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>G|||||1313|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>G|||||3950|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>G|||||3847|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-715A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-715A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-715A>G||||||
1	904962	.	G	A	535.79	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1293|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||3930|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||3867|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-695G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-695G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-695G>A||||||
1	904989	.	T	G	2300.93	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>G|||||1266|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>G|||||3903|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>G|||||3894|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-668T>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-668T>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-668T>G||||||
1	904998	.	A	T	8.84	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>T|||||1257|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>T|||||3894|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>T|||||3903|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-659A>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-659A>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-659A>T||||||
1	905017	rs59766802	T	C	30790.21	.	AC=291;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>C|||||1238|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||3875|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||3922|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-640T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-640T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-640T>C||||||
1	905020	rs116317093	A	G	4859.22	.	AC=39;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>G|||||1235|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>G|||||3872|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>G|||||3925|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-637A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-637A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-637A>G||||||
1	905053	.	C	T	229.19	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||1202|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||3839|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||3958|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-604C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-604C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-604C>T||||||
1	905064	rs117621452	A	C	725.49	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>C|||||1191|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>C|||||3828|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>C|||||3969|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-593A>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-593A>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-593A>C||||||
1	905074	.	A	G	2041.84	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>G|||||1181|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>G|||||3818|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>G|||||3979|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-583A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-583A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-583A>G||||||
1	905105	.	T	C	49.27	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>C|||||1150|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||3787|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>C|||||4010|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-552T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-552T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-552T>C||||||
1	905160	rs7555426	C	T	62056.81	.	AC=650;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||1095|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||3732|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||4065|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-497C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-497C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-497C>T||||||
1	905165	rs7522959	A	G	112322.94	.	AC=940;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>G|||||1090|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>G|||||3727|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>G|||||4070|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-492A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-492A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-492A>G||||||
1	905191	.	G	A	570.64	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1064|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||3701|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||4096|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-466G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-466G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-466G>A||||||
1	905230	.	A	C	1045.85	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>C|||||1025|,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>C|||||3662|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>C|||||4135|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-427A>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-427A>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-427A>C||||||
1	905232	.	C	T	6.12	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||1023|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||3660|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||4137|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-425C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-425C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-425C>T||||||
1	905242	rs115059003	T	G	722.8	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1T>G|||||1013|,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>G|||||3650|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036T>G|||||4147|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-415T>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-415T>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-415T>G||||||
1	905245	rs111670317	G	A	325.94	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1010|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||3647|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||4150|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-412G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-412G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-412G>A||||||
1	905251	.	G	A	145.1	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||1004|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||3641|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||4156|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-406G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-406G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-406G>A||||||
1	905515	.	C	T	58.29	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||740|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||3377|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||4420|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-142C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-142C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-142C>T||||||
1	905554	rs117513573	A	T	339.42	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1A>T|||||701|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>T|||||3338|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036A>T|||||4459|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|2/14|c.184-103A>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|2/15|c.184-103A>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|2/14|c.184-103A>T||||||
1	905723	.	G	A	49.78	.	AC=1;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|3/15|c.250G>A|p.Gly84Arg|280/2455|250/1992|84/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|3/16|c.250G>A|p.Gly84Arg|285/2404|250/1836|84/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|3/15|c.250G>A|p.Gly84Arg|280/2194|250/1731|84/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||532|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||3169|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||4628|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||4856|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||4861|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||4862|
1	905894	rs41285810	C	T	449.76	.	AC=11;ANN=T|splice_region_variant&intron_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|3/14|c.331-7C>T||||||,T|splice_region_variant&intron_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|3/15|c.331-7C>T||||||,T|splice_region_variant&intron_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|3/14|c.331-7C>T||||||,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||361|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||2998|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||4799|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||4685|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||4690|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||4691|
1	905964	.	G	A	9.9	.	AC=1;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|4/15|c.394G>A|p.Glu132Lys|424/2455|394/1992|132/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|4/16|c.394G>A|p.Glu132Lys|429/2404|394/1836|132/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|4/15|c.394G>A|p.Glu132Lys|424/2194|394/1731|132/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1G>A|||||291|,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||2928|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036G>A|||||4869|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||4615|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||4620|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||4621|
1	906015	.	C	T	22.18	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.-1C>T|||||240|,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||2877|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|KLHL17|ENSG00000187961|transcript|ENST00000338591|protein_coding||c.*2036C>T|||||4920|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||4564|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||4569|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||4570|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|4/14|c.411+34C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|4/15|c.411+34C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|4/14|c.411+34C>T||||||
1	906272	rs28507236	A	C	3083.05	.	AC=135;ANN=C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|5/15|c.618A>C|p.Ala206Ala|648/2455|618/1992|206/663||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|6/16|c.498A>C|p.Ala166Ala|533/2404|498/1836|166/611||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|6/15|c.498A>C|p.Ala166Ala|528/2194|498/1731|166/576||,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>C|||||2620|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>G|||||4307|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>G|||||4312|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>G|||||4313|,C|non_coding_exon_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron|1/3|n.18A>C||||||
1	906302	rs41300090	C	T	56.62	.	AC=3;ANN=T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|5/15|c.648C>T|p.Ala216Ala|678/2455|648/1992|216/663||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|6/16|c.528C>T|p.Ala176Ala|563/2404|528/1836|176/611||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|6/15|c.528C>T|p.Ala176Ala|558/2194|528/1731|176/576||,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||2590|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||4277|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||4282|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||4283|,T|non_coding_exon_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron|1/3|n.48C>T||||||
1	906769	rs78850589	C	A	63.48	.	AC=3;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/15|c.930C>A|p.Asp310Glu|960/2455|930/1992|310/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/16|c.774C>A|p.Asp258Glu|809/2404|774/1836|258/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/15|c.810C>A|p.Asp270Glu|840/2194|810/1731|270/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>A|||||2123|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>T|||||3810|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>T|||||3815|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>T|||||3816|,A|non_coding_exon_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron|3/3|n.330C>A||||||
1	906814	.	C	T	17.88	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||2078|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||3765|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||3770|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||3771|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.945+30C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.789+30C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.825+30C>T||||||,T|non_coding_exon_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron|3/3|n.375C>T||||||
1	906872	.	C	T	50.13	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||2020|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||3707|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||3712|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||3713|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.945+88C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.789+88C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.825+88C>T||||||,T|non_coding_exon_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron|3/3|n.433C>T||||||
1	906974	rs28687571	G	A	2710.1	.	AC=103;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||1918|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||3605|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||71|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||3610|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||3611|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.945+190G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.789+190G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.825+190G>A||||||
1	907010	rs116396715	C	G	275.51	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>G|||||1882|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>C|||||3569|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>G|||||107|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>C|||||3574|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>C|||||3575|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.945+226C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.789+226C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.825+226C>G||||||
1	907023	rs28417170	G	A	2745.63	.	AC=106;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||1869|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||3556|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||120|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||3561|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||3562|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.945+239G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.789+239G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.825+239G>A||||||
1	907061	.	G	A	198.31	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||1831|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||3518|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||158|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||3523|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||3524|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.945+277G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.789+277G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.825+277G>A||||||
1	907215	.	C	T	27.11	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||1677|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||3364|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||312|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||3369|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||3370|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.946-240C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.790-240C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.826-240C>T||||||
1	907217	rs74045032	C	T	775.31	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||1675|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||3362|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||314|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||3367|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||3368|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.946-238C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.790-238C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.826-238C>T||||||
1	907261	.	C	T	162.72	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||1631|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||3318|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||358|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||3323|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||3324|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.946-194C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.790-194C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.826-194C>T||||||
1	907272	.	G	A	26.82	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||1620|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||3307|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||369|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||3312|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||3313|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|7/14|c.946-183G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|8/15|c.790-183G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|8/14|c.826-183G>A||||||
1	907497	.	A	G	122.27	.	AC=1;ANN=G|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|8/15|c.988A>G|p.Lys330Glu|1018/2455|988/1992|330/663||,G|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|9/16|c.832A>G|p.Lys278Glu|867/2404|832/1836|278/611||,G|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|9/15|c.868A>G|p.Lys290Glu|898/2194|868/1731|290/576||,G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>G|||||1395|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||3082|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||594|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||3087|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||3088|
1	907540	.	T	C	116.29	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||1352|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||3039|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||637|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||3044|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||3045|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|8/14|c.1021+10T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|9/15|c.865+10T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|9/14|c.901+10T>C||||||
1	907546	.	T	C	55.67	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||1346|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||3033|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||643|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||3038|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||3039|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|8/14|c.1021+16T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|9/15|c.865+16T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|9/14|c.901+16T>C||||||
1	907609	rs79890672	T	C	1270.69	.	AC=67;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||1283|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||2970|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||706|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||2975|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||2976|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|8/14|c.1022-59T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|9/15|c.866-59T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|9/14|c.902-59T>C||||||
1	907622	rs59928984	G	C	1537.39	.	AC=76;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>C|||||1270|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>G|||||2957|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||719|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>G|||||2962|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>G|||||2963|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|8/14|c.1022-46G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|9/15|c.866-46G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|9/14|c.902-46G>C||||||
1	907774	.	G	A	38.8	.	AC=2;ANN=A|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/15|c.1128G>A|p.Leu376Leu|1158/2455|1128/1992|376/663||,A|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/16|c.972G>A|p.Leu324Leu|1007/2404|972/1836|324/611||,A|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/15|c.1008G>A|p.Leu336Leu|1038/2194|1008/1731|336/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||1118|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||2805|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||871|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||2810|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||2811|
1	907799	rs111909377	T	C	569.71	.	AC=21;ANN=C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/15|c.1153T>C|p.Ser385Pro|1183/2455|1153/1992|385/663||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/16|c.997T>C|p.Ser333Pro|1032/2404|997/1836|333/611||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/15|c.1033T>C|p.Ser345Pro|1063/2194|1033/1731|345/576||,C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||1093|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||2780|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||896|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||2785|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||2786|
1	907801	rs78079967	G	A	132.35	.	AC=2;ANN=A|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/15|c.1155G>A|p.Ser385Ser|1185/2455|1155/1992|385/663||,A|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/16|c.999G>A|p.Ser333Ser|1034/2404|999/1836|333/611||,A|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/15|c.1035G>A|p.Ser345Ser|1065/2194|1035/1731|345/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||1091|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||2778|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||898|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||2783|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||2784|
1	907816	rs111795407	A	G	715.93	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>G|||||1076|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||2763|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||913|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||2768|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||2769|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1158+12A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1002+12A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1038+12A>G||||||
1	907883	.	C	T	210.08	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||1009|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||2696|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||980|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||2701|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||2702|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1158+79C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1002+79C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1038+79C>T||||||
1	907911	.	T	C	55.29	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||981|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||2668|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||1008|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||2673|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||2674|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1158+107T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1002+107T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1038+107T>C||||||
1	907920	rs28430926	C	G,T	2252.36	.	AC=96;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>G|||||972|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||972|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>C|||||2659|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||2659|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>G|||||1017|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||1017|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>C|||||2664|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||2664|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>C|||||2665|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||2665|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1158+116C>G||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1158+116C>T||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1002+116C>G||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1002+116C>T||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1038+116C>G||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1038+116C>T||||||
1	907993	rs78806832	A	C	855.58	.	AC=26;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>C|||||899|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>G|||||2586|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>C|||||1090|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>G|||||2591|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>G|||||2592|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1158+189A>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1002+189A>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1038+189A>C||||||
1	908025	rs112185012	G	A	823.66	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||867|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||2554|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||1122|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||2559|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||2560|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1159-216G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1003-216G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1039-216G>A||||||
1	908077	.	C	T	616.47	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||815|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||2502|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||1174|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||2507|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||2508|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1159-164C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1003-164C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1039-164C>T||||||
1	908170	rs28542142	C	G	5765.73	.	AC=181;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>G|||||722|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>C|||||2409|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>G|||||1267|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>C|||||2414|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>C|||||2415|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1159-71C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1003-71C>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1039-71C>G||||||
1	908228	rs114784663	A	G	150.26	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1A>G|||||664|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||2351|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||1325|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||2356|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||2357|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|9/14|c.1159-13A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|10/15|c.1003-13A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|10/14|c.1039-13A>G||||||
1	908275	.	G	A	344.32	.	AC=16;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|10/15|c.1193G>A|p.Gly398Asp|1223/2455|1193/1992|398/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|11/16|c.1037G>A|p.Gly346Asp|1072/2404|1037/1836|346/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/15|c.1073G>A|p.Gly358Asp|1103/2194|1073/1731|358/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||617|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||2304|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||1372|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||2309|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||2310|
1	908323	rs61732689	G	A	525.58	.	AC=23;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|10/15|c.1241G>A|p.Arg414His|1271/2455|1241/1992|414/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|11/16|c.1085G>A|p.Arg362His|1120/2404|1085/1836|362/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/15|c.1121G>A|p.Arg374His|1151/2194|1121/1731|374/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||569|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||2256|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||1420|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||2261|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||2262|
1	908389	rs75748725	C	T	46.6	.	AC=2;ANN=T|missense_variant&splice_region_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|10/15|c.1307C>T|p.Pro436Leu|1337/2455|1307/1992|436/663||,T|missense_variant&splice_region_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|11/16|c.1151C>T|p.Pro384Leu|1186/2404|1151/1836|384/611||,T|missense_variant&splice_region_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/15|c.1187C>T|p.Pro396Leu|1217/2194|1187/1731|396/576||,T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||503|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||2190|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||1486|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||2195|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||2196|
1	908390	.	G	A	60.59	.	AC=6;ANN=A|splice_region_variant&synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|10/15|c.1308G>A|p.Pro436Pro|1338/2455|1308/1992|436/663||,A|splice_region_variant&synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|11/16|c.1152G>A|p.Pro384Pro|1187/2404|1152/1836|384/611||,A|splice_region_variant&synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/15|c.1188G>A|p.Pro396Pro|1218/2194|1188/1731|396/576||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||502|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||2189|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||1487|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||2194|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||2195|
1	908414	rs28504611	C	T	9108.2	.	AC=177;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||478|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||2165|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||1511|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||2170|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||2171|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|10/14|c.1308+24C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|11/15|c.1152+24C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/14|c.1188+24C>T||||||
1	908550	.	T	C	117.5	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1T>C|||||342|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||2029|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||1647|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||2034|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||2035|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:908486_908635|||||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|10/14|c.1309-16T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|11/15|c.1153-16T>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/14|c.1188+160T>C||||||
1	908669	.	G	A	118.22	.	AC=2;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|11/15|c.1412G>A|p.Arg471His|1442/2455|1412/1992|471/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|12/16|c.1256G>A|p.Arg419His|1291/2404|1256/1836|419/611||,A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||223|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||1910|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||1766|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||1915|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||1916|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/14|c.1189-211G>A||||||
1	908749	rs111919992	C	T	744.67	.	AC=19;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||143|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1830|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||1846|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1835|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1836|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|11/14|c.1449+43C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|12/15|c.1293+43C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/14|c.1189-131C>T||||||
1	908823	rs28687780	G	A	7381.57	.	AC=124;ANN=A|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1G>A|||||69|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||1756|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||1920|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||1761|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||1762|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|11/14|c.1450-57G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|12/15|c.1294-57G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/14|c.1189-57G>A||||||
1	908846	.	C	T	115.3	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.-1C>T|||||46|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1733|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||1943|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1738|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1739|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|11/14|c.1450-34C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|12/15|c.1294-34C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|11/14|c.1189-34C>T||||||
1	908929	.	C	T	173.99	.	AC=4;ANN=T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|12/15|c.1499C>T|p.Ser500Leu|1529/2455|1499/1992|500/663||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|13/16|c.1343C>T|p.Ser448Leu|1378/2404|1343/1836|448/611||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|12/15|c.1238C>T|p.Ser413Leu|1268/2194|1238/1731|413/576||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|1/5|c.38C>T|p.Ser13Leu|38/698|38/531|13/176||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1650|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2026|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1655|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1656|
1	909053	rs116854740	G	A	318.74	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||1526|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||2150|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||1531|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||1532|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|12/14|c.1590+33G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|13/15|c.1434+33G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|12/14|c.1329+33G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|1/4|c.129+33G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909073	rs3892467	C	T	15450.47	.	AC=326;ANN=T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1506|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2170|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1511|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1512|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|12/14|c.1590+53C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|13/15|c.1434+53C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|12/14|c.1329+53C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|1/4|c.129+53C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909100	.	C	T	34.45	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1479|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2197|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1484|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1485|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|12/14|c.1590+80C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|13/15|c.1434+80C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|12/14|c.1329+80C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|1/4|c.129+80C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909167	.	G	C	39.73	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>G|||||1412|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||2264|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>G|||||1417|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>G|||||1418|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|12/14|c.1591-46G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|13/15|c.1435-46G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|12/14|c.1330-46G>C||||||,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|1/4|c.130-46G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909221	rs62639985	T	C	445.23	.	AC=16;ANN=C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1599T>C|p.Ser533Ser|1629/2455|1599/1992|533/663||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1443T>C|p.Ser481Ser|1478/2404|1443/1836|481/611||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1338T>C|p.Ser446Ser|1368/2194|1338/1731|446/576||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.138T>C|p.Ser46Ser|138/698|138/531|46/176||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||1358|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||2318|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||1363|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||1364|
1	909222	rs56185812	G	A	481.67	.	AC=20;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1600G>A|p.Ala534Thr|1630/2455|1600/1992|534/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1444G>A|p.Ala482Thr|1479/2404|1444/1836|482/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1339G>A|p.Ala447Thr|1369/2194|1339/1731|447/576||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.139G>A|p.Ala47Thr|139/698|139/531|47/176||WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||1357|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||2319|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||1362|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||1363|
1	909238	rs3829740	G	C	26374.58	.	AC=520;ANN=C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1616G>C|p.Arg539Pro|1646/2455|1616/1992|539/663||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1460G>C|p.Arg487Pro|1495/2404|1460/1836|487/611||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1355G>C|p.Arg452Pro|1385/2194|1355/1731|452/576||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.155G>C|p.Arg52Pro|155/698|155/531|52/176||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>G|||||1341|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||2335|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>G|||||1346|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>G|||||1347|
1	909242	rs3829739	A	G	2842.78	.	AC=91;ANN=G|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1620A>G|p.Gly540Gly|1650/2455|1620/1992|540/663||,G|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1464A>G|p.Gly488Gly|1499/2404|1464/1836|488/611||,G|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1359A>G|p.Gly453Gly|1389/2194|1359/1731|453/576||,G|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.159A>G|p.Gly53Gly|159/698|159/531|53/176||WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||1337|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||2339|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||1342|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||1343|
1	909253	.	C	T	74.16	.	AC=2;ANN=T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1631C>T|p.Ser544Leu|1661/2455|1631/1992|544/663||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1475C>T|p.Ser492Leu|1510/2404|1475/1836|492/611||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1370C>T|p.Ser457Leu|1400/2194|1370/1731|457/576||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.170C>T|p.Ser57Leu|170/698|170/531|57/176||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1326|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2350|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1331|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1332|
1	909309	rs3829738	T	C	5897.1	.	AC=138;ANN=C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1687T>C|p.Ser563Pro|1717/2455|1687/1992|563/663||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1531T>C|p.Ser511Pro|1566/2404|1531/1836|511/611||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1426T>C|p.Ser476Pro|1456/2194|1426/1731|476/576||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.226T>C|p.Ser76Pro|226/698|226/531|76/176||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||1270|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||2406|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||1275|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||1276|
1	909314	.	C	T	130.62	.	AC=2;ANN=T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1692C>T|p.Ser564Ser|1722/2455|1692/1992|564/663||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1536C>T|p.Ser512Ser|1571/2404|1536/1836|512/611||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1431C>T|p.Ser477Ser|1461/2194|1431/1731|477/576||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.231C>T|p.Ser77Ser|231/698|231/531|77/176||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1265|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2411|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1270|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1271|
1	909326	rs61573829	C	T	1817.44	.	AC=74;ANN=T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1704C>T|p.Gly568Gly|1734/2455|1704/1992|568/663||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1548C>T|p.Gly516Gly|1583/2404|1548/1836|516/611||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1443C>T|p.Gly481Gly|1473/2194|1443/1731|481/576||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.243C>T|p.Gly81Gly|243/698|243/531|81/176||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1253|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2423|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1258|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1259|
1	909363	rs62639990	A	C	917.4	.	AC=41;ANN=C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1741A>C|p.Arg581Arg|1771/2455|1741/1992|581/663||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1585A>C|p.Arg529Arg|1620/2404|1585/1836|529/611||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1480A>C|p.Arg494Arg|1510/2194|1480/1731|494/576||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.280A>C|p.Arg94Arg|280/698|280/531|94/176||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>G|||||1216|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>C|||||2460|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>G|||||1221|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>G|||||1222|
1	909406	.	C	T	43.12	.	AC=1;ANN=T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1784C>T|p.Pro595Leu|1814/2455|1784/1992|595/663||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1628C>T|p.Pro543Leu|1663/2404|1628/1836|543/611||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1523C>T|p.Pro508Leu|1553/2194|1523/1731|508/576||,T|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.323C>T|p.Pro108Leu|323/698|323/531|108/176||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1173|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2503|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1178|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1179|
1	909419	rs28548431	C	T	2280.36	.	AC=84;ANN=T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1797C>T|p.Asp599Asp|1827/2455|1797/1992|599/663||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1641C>T|p.Asp547Asp|1676/2404|1641/1836|547/611||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1536C>T|p.Asp512Asp|1566/2194|1536/1731|512/576||,T|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.336C>T|p.Asp112Asp|336/698|336/531|112/176||WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1160|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2516|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1165|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1166|
1	909428	.	G	C	26.02	.	AC=1;ANN=C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/15|c.1806G>C|p.Gln602His|1836/2455|1806/1992|602/663||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/16|c.1650G>C|p.Gln550His|1685/2404|1650/1836|550/611||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/15|c.1545G>C|p.Gln515His|1575/2194|1545/1731|515/576||,C|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/5|c.345G>C|p.Gln115His|345/698|345/531|115/176||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>G|||||1151|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||2525|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>G|||||1156|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>G|||||1157|
1	909462	.	C	T	15.46	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||1117|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2559|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||1122|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||1123|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/14|c.1809+31C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/15|c.1653+31C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/14|c.1548+31C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/4|c.348+31C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909523	.	G	A	122.97	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||1056|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||2620|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||1061|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||1062|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/14|c.1809+92G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/15|c.1653+92G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/14|c.1548+92G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/4|c.348+92G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909555	rs2340594	A	G	17242.38	.	AC=592;ANN=G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||1024|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||2652|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||1029|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||1030|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/14|c.1809+124A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/15|c.1653+124A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/14|c.1548+124A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/4|c.348+124A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909614	.	G	A	49.7	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||965|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||2711|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||970|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||971|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/14|c.1810-82G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/15|c.1654-82G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/14|c.1549-82G>A||||||,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/4|c.349-82G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909665	.	C	T	25.21	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||914|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2762|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||919|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||920|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|13/14|c.1810-31C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|14/15|c.1654-31C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|13/14|c.1549-31C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|2/4|c.349-31C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909768	rs2340593	A	G	38894.93	.	AC=834;ANN=G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||811|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||2865|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||816|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||817|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|14/14|c.1858+24A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|15/15|c.1702+24A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|14/14|c.1597+24A>G||||||,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|3/4|c.397+24A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909795	.	C	T	35.72	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||784|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||2892|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||789|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||790|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|14/14|c.1859-27C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|15/15|c.1703-27C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|14/14|c.1598-27C>T||||||,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|3/4|c.398-27C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	909917	.	G	A	21.55	.	AC=3;ANN=A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|15/15|c.1954G>A|p.Gly652Arg|1984/2455|1954/1992|652/663||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.1798G>A|p.Gly600Arg|1833/2404|1798/1836|600/611||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|15/15|c.1693G>A|p.Gly565Arg|1723/2194|1693/1731|565/576||,A|missense_variant|MODERATE|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/5|c.493G>A|p.Gly165Arg|493/698|493/531|165/176||WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||662|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||3014|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||667|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||668|
1	909937	rs78958031	G	C	112.39	.	AC=5;ANN=C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|15/15|c.1974G>C|p.Gly658Gly|2004/2455|1974/1992|658/663||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.1818G>C|p.Gly606Gly|1853/2404|1818/1836|606/611||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|15/15|c.1713G>C|p.Gly571Gly|1743/2194|1713/1731|571/576||,C|synonymous_variant|LOW|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/5|c.513G>C|p.Gly171Gly|513/698|513/531|171/176||WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>G|||||642|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||3034|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>G|||||647|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>G|||||648|
1	909983	.	C	T	40.41	.	AC=3;ANN=T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|15/15|c.*28C>T|||||28|,T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*28C>T|||||28|,T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|15/15|c.*28C>T|||||28|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||596|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||3080|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||601|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||602|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+15C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910053	.	A	G	22.22	.	AC=2;ANN=G|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|15/15|c.*98A>G|||||98|,G|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*98A>G|||||98|,G|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|15/15|c.*98A>G|||||98|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||526|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||3150|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||531|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||532|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+85A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910174	rs111830434	C	T	88.13	.	AC=5;ANN=T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|15/15|c.*219C>T|||||219|,T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*219C>T|||||219|,T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|15/15|c.*219C>T|||||219|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||405|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||3271|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||410|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||411|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+206C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910264	rs114241396	G	A	117.95	.	AC=7;ANN=A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding|15/15|c.*309G>A|||||309|,A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*309G>A|||||309|,A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding|15/15|c.*309G>A|||||309|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||315|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||3361|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||320|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||321|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+296G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910394	rs28477686	C	T	14553.54	.	AC=327;ANN=T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*439C>T|||||439|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||6|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||185|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||6|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||3491|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||190|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||191|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+426C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910409	rs28536514	T	C	5228.82	.	AC=110;ANN=C|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*454T>C|||||454|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022T>C|||||21|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091A>G|||||170|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761T>C|||||21|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||3506|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067A>G|||||175|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208A>G|||||176|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+441T>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910433	.	C	T	129.98	.	AC=7;ANN=T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*478C>T|||||478|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||45|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091G>A|||||146|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||45|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||3530|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067G>A|||||151|,T|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208G>A|||||152|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+465C>T||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910434	.	G	A	30.72	.	AC=7;ANN=A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*479G>A|||||479|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||46|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||145|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||46|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||3531|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||150|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||151|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+466G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910438	rs6685581	A	G	31943.08	.	AC=700;ANN=G|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*483A>G|||||483|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022A>G|||||50|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091T>C|||||141|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761A>G|||||50|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||3535|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067T>C|||||146|,G|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208T>C|||||147|,G|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+470A>G||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910445	.	G	A	122.7	.	AC=1;ANN=A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*490G>A|||||490|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||57|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||134|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||57|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||3542|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||139|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||140|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+477G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910473	rs28561399	G	A	5538.67	.	AC=115;ANN=A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding|16/16|c.*518G>A|||||518|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||85|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||106|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||85|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||3570|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||111|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||112|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+505G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910512	rs74424855	G	C	1716.38	.	AC=53;ANN=C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>C|||||124|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>G|||||67|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>C|||||24|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>C|||||124|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||3609|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>G|||||72|,C|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>G|||||73|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*13+544G>C||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910557	rs57882238	G	A	342.48	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||169|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.*2091C>T|||||22|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||69|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||169|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||3654|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.*2067C>T|||||27|,A|downstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.*1208C>T|||||28|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-535G>A||||||WARNING_TRANSCRIPT_NO_START_CODON
1	910622	.	C	T	31.31	.	AC=1;ANN=T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*930G>A|||||930|,T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*930G>A|||||930|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||234|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||134|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||234|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||3719|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-470C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.1171G>A||||||
1	910650	.	G	C	16.32	.	AC=2;ANN=C|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*902C>G|||||902|,C|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*902C>G|||||902|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>C|||||262|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>C|||||162|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>C|||||262|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||3747|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-442G>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.1143C>G||||||
1	910843	.	C	T	54.5	.	AC=3;ANN=T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*709G>A|||||709|,T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*709G>A|||||709|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||455|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||355|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||455|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||3940|,T|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-249C>T||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.950G>A||||||
1	910871	.	G	A	82.42	.	AC=2;ANN=A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*681C>T|||||681|,A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*681C>T|||||681|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||483|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||383|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||483|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||3968|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-221G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.922C>T||||||
1	910903	rs4970429	T	C	21751.96	.	AC=586;ANN=C|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*649A>G|||||649|,C|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*649A>G|||||649|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022T>C|||||515|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871T>C|||||415|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761T>C|||||515|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464T>C|||||4000|,C|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-189T>C||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.890A>G||||||
1	910904	.	G	A	79.97	.	AC=1;ANN=A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*648C>T|||||648|,A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*648C>T|||||648|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||516|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||416|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||516|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||4001|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-188G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.889C>T||||||
1	910935	rs2340592	G	A	8208.61	.	AC=197;ANN=A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*617C>T|||||617|,A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*617C>T|||||617|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||547|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||447|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||547|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||4032|,A|intron_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|4/4|c.*14-157G>A||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.858C>T||||||
1	911101	rs3748588	C	T	1499.26	.	AC=53;ANN=T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*451G>A|||||451|,T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|5/5|c.*23C>T|||||1146|WARNING_TRANSCRIPT_NO_START_CODON,T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*451G>A|||||451|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||713|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||613|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||713|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||4198|,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.692G>A||||||
1	911129	.	G	A	26.17	.	AC=4;ANN=A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*423C>T|||||423|,A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|5/5|c.*51G>A|||||1174|WARNING_TRANSCRIPT_NO_START_CODON,A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*423C>T|||||423|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||741|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||641|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||741|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||4226|,A|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.664C>T||||||
1	911160	.	C	T	22.81	.	AC=2;ANN=T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*392G>A|||||392|,T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|5/5|c.*82C>T|||||1205|WARNING_TRANSCRIPT_NO_START_CODON,T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*392G>A|||||392|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||772|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||672|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||772|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||4257|,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.633G>A||||||
1	911181	rs114918572	G	A	380.52	.	AC=10;ANN=A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*371C>T|||||371|,A|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|5/5|c.*103G>A|||||1226|WARNING_TRANSCRIPT_NO_START_CODON,A|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*371C>T|||||371|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||793|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||693|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||793|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>A|||||4278|,A|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.612C>T||||||
1	911236	.	C	T	12.56	.	AC=1;ANN=T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*316G>A|||||316|,T|3_prime_UTR_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding|5/5|c.*158C>T|||||1281|WARNING_TRANSCRIPT_NO_START_CODON,T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*316G>A|||||316|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||848|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||748|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||848|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||4333|,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.557G>A||||||
1	911301	.	C	T	164.83	.	AC=3;ANN=T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*251G>A|||||251|,T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*251G>A|||||251|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||913|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||813|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||913|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||4398|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||56|WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.492G>A||||||
1	911336	rs116044780	C	T	30.73	.	AC=3;ANN=T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*216G>A|||||216|,T|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*216G>A|||||216|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||948|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||848|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||948|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||4433|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||91|WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.457G>A||||||
1	911418	rs113068688	A	C	377.22	.	AC=16;ANN=C|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.*134T>G|||||134|,C|3_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.*134T>G|||||134|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022A>C|||||1030|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871A>C|||||930|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761A>C|||||1030|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>C|||||4515|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531A>C|||||173|WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.375T>G||||||
1	911595	rs7417106	A	G	10153.06	.	AC=369;ANN=G|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|5/5|c.2048T>C|p.Val683Ala|2048/3064|2048/2091|683/696||,G|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|5/5|c.1988T>C|p.Val663Ala|2024/3035|1988/2031|663/676||,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022A>G|||||1207|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871A>G|||||1107|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761A>G|||||1207|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464A>G|||||4692|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531A>G|||||350|WARNING_TRANSCRIPT_NO_START_CODON,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:911526_911675|||||||||,G|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|2/2|n.198T>C||||||
1	911769	.	G	C	10.07	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>C|||||1381|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>C|||||1281|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>C|||||1381|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464G>C|||||4866|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>C|||||524|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|4/4|c.1993+110C>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|4/4|c.1933+110C>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|1/1|n.143+110C>G||||||
1	911857	.	C	T	83.42	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||1469|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||1369|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||1469|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000480267|retained_intron||n.*464C>T|||||4954|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||612|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|4/4|c.1993+22G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|4/4|c.1933+22G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|1/1|n.143+22G>A||||||
1	911916	rs74045046	C	T	5334.74	.	AC=111;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|4/5|c.1956G>A|p.Arg652Arg|1956/3064|1956/2091|652/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|4/5|c.1896G>A|p.Arg632Arg|1932/3035|1896/2031|632/676||,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||1528|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||1428|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||1528|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||671|WARNING_TRANSCRIPT_NO_START_CODON,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:911886_912035|||||||||,T|non_coding_exon_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron|1/2|n.106G>A||||||
1	912049	rs9803103	T	C	3133.12	.	AC=189;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>G|||||28|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022T>C|||||1661|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871T>C|||||1561|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761T>C|||||1661|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531T>C|||||804|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-45A>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-45A>G||||||
1	912103	rs9803017	G	A	499.84	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||82|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||1715|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1615|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||1715|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||858|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-99C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-99C>T||||||
1	912158	.	G	A	54.64	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||137|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||1770|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1670|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||1770|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||913|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-154C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-154C>T||||||
1	912286	.	G	A	23.18	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||265|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||1898|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1798|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||1898|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1041|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-282C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-282C>T||||||
1	912318	.	G	A	624.86	.	AC=39;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||297|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||1930|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1830|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||1930|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1073|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-314C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-314C>T||||||
1	912365	.	G	A	33.8	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||344|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||1977|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1877|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||1977|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1120|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-361C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-361C>T||||||
1	912383	.	A	C	22.95	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>G|||||362|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022A>C|||||1995|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871A>C|||||1895|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761A>C|||||1995|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531A>C|||||1138|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-379T>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-379T>G||||||
1	912403	.	G	A	63.51	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||382|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2015|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1915|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2015|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1158|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-399C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-399C>T||||||
1	912435	.	G	A	22.39	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||414|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2047|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1947|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2047|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1190|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-431C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-431C>T||||||
1	912467	.	G	A	106.65	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||446|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2079|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||1979|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2079|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1222|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-463C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-463C>T||||||
1	912498	.	G	A	67.6	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||477|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2110|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2010|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2110|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1253|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-494C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-494C>T||||||
1	912530	.	G	A	51.2	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||509|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2142|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2042|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2142|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1285|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-526C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-526C>T||||||
1	912562	.	G	A	26.28	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||541|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2174|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2074|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2174|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1317|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-558C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-558C>T||||||
1	912594	.	G	A	105.83	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||573|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2206|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2106|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2206|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1349|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-590C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-590C>T||||||
1	912603	.	A	G	137.56	.	AC=19;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>C|||||582|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022A>G|||||2215|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871A>G|||||2115|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761A>G|||||2215|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531A>G|||||1358|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-599T>C||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-599T>C||||||
1	912608	.	C	T	91.61	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||587|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||2220|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||2120|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||2220|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||1363|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-604G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-604G>A||||||
1	912660	.	A	G	249.12	.	AC=20;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>C|||||639|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022A>G|||||2272|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871A>G|||||2172|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761A>G|||||2272|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531A>G|||||1415|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-656T>C||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-656T>C||||||
1	912750	.	G	A	5.08	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||729|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2362|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2262|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2362|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1505|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-746C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-746C>T||||||
1	913006	.	G	A	56.73	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||985|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2618|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2518|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2618|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1761|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-1002C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-1002C>T||||||
1	913070	.	G	A	184.19	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||1049|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2682|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2582|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2682|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1825|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-1066C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-1066C>T||||||
1	913077	.	C	G	76.79	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>C|||||1056|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>G|||||2689|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>G|||||2589|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>G|||||2689|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>G|||||1832|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-1073G>C||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-1073G>C||||||
1	913094	.	G	A	23.17	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||1073|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||2706|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||2606|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||2706|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||1849|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1868-1090C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1808-1090C>T||||||
1	913181	.	T	C	138.11	.	AC=12;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>G|||||1160|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022T>C|||||2793|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871T>C|||||2693|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761T>C|||||2793|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531T>C|||||1936|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+1080A>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+1080A>G||||||
1	913239	.	T	C	203.18	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>G|||||1218|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022T>C|||||2851|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871T>C|||||2751|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761T>C|||||2851|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531T>C|||||1994|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+1022A>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+1022A>G||||||
1	913258	.	C	T	19.22	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||1237|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||2870|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||2770|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||2870|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||2013|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+1003G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+1003G>A||||||
1	913343	.	G	C	66.42	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>G|||||1322|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>C|||||2955|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>C|||||2855|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>C|||||2955|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>C|||||2098|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+918C>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+918C>G||||||
1	913345	.	C	G	12.72	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>C|||||1324|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>G|||||2957|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>G|||||2857|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>G|||||2957|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>G|||||2100|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+916G>C||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+916G>C||||||
1	913429	.	C	G	30.34	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>C|||||1408|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>G|||||3041|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>G|||||2941|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>G|||||3041|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>G|||||2184|WARNING_TRANSCRIPT_NO_START_CODON,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:913426_913575|||||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+832G>C||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+832G>C||||||
1	913520	.	G	A	14.16	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||1499|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||3132|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||3032|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||3132|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||2275|WARNING_TRANSCRIPT_NO_START_CODON,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:913426_913575|||||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+741C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+741C>T||||||
1	913605	.	C	T	107.66	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||1584|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||3217|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||3117|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||3217|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||2360|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+656G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+656G>A||||||
1	913610	rs74045047	G	A	3013.45	.	AC=117;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||1589|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||3222|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||3122|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||3222|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||2365|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+651C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+651C>T||||||
1	913698	rs115113522	C	T	1318.5	.	AC=36;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||1677|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||3310|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||3210|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||3310|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||2453|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+563G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+563G>A||||||
1	913753	rs28376316	G	A	293.28	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||1732|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||3365|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||3265|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||3365|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||2508|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+508C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+508C>T||||||
1	913788	.	C	T	11.07	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||1767|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||3400|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||3300|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||3400|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||2543|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+473G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+473G>A||||||
1	913797	.	C	T	11.11	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||1776|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||3409|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||3309|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||3409|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||2552|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+464G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+464G>A||||||
1	913889	rs2340596	G	A	22455.56	.	AC=510;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||1868|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||3501|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||3401|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||3501|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||2644|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+372C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+372C>T||||||
1	913901	.	G	A	17.1	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||1880|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||3513|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||3413|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||3513|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||2656|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+360C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+360C>T||||||
1	914048	.	G	A	58.34	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||2027|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||3660|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||3560|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||3660|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||2803|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+213C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+213C>T||||||
1	914090	.	C	T	44.84	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||2069|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||3702|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||3602|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||3702|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||2845|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+171G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+171G>A||||||
1	914192	rs2340595	G	C	23031.64	.	AC=618;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>G|||||2171|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>C|||||3804|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>C|||||3704|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>C|||||3804|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>C|||||2947|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/4|c.1867+69C>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/4|c.1807+69C>G||||||
1	914325	.	C	T	184.16	.	AC=10;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1803G>A|p.Ala601Ala|1803/3064|1803/2091|601/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1743G>A|p.Ala581Ala|1779/3035|1743/2031|581/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||2304|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||3937|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||3837|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||3937|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||3080|WARNING_TRANSCRIPT_NO_START_CODON
1	914333	rs13302979	C	G	10452.6	.	AC=325;ANN=G|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1795G>C|p.Glu599Gln|1795/3064|1795/2091|599/696||,G|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1735G>C|p.Glu579Gln|1771/3035|1735/2031|579/676||,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>C|||||2312|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>G|||||3945|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>G|||||3845|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>G|||||3945|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>G|||||3088|WARNING_TRANSCRIPT_NO_START_CODON
1	914610	.	C	T	207.53	.	AC=11;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1518G>A|p.Ala506Ala|1518/3064|1518/2091|506/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1458G>A|p.Ala486Ala|1494/3035|1458/2031|486/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||2589|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||4222|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||4122|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||4222|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||3365|WARNING_TRANSCRIPT_NO_START_CODON
1	914667	rs116189919	C	T	17.06	.	AC=1;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1461G>A|p.Pro487Pro|1461/3064|1461/2091|487/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1401G>A|p.Pro467Pro|1437/3035|1401/2031|467/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||2646|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||4279|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||4179|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||4279|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||3422|WARNING_TRANSCRIPT_NO_START_CODON
1	914727	.	G	T	44.6	.	AC=2;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1401C>A|p.Arg467Arg|1401/3064|1401/2091|467/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1341C>A|p.Arg447Arg|1377/3035|1341/2031|447/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>A|||||2706|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>T|||||4339|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>T|||||4239|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>T|||||4339|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>T|||||3482|WARNING_TRANSCRIPT_NO_START_CODON
1	914749	.	C	T	38.77	.	AC=4;ANN=T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1379G>A|p.Arg460Gln|1379/3064|1379/2091|460/696||,T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1319G>A|p.Arg440Gln|1355/3035|1319/2031|440/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||2728|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||4361|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||4261|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||4361|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||3504|WARNING_TRANSCRIPT_NO_START_CODON
1	914839	rs34903276	C	T	821.06	.	AC=43;ANN=T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1289G>A|p.Arg430Gln|1289/3064|1289/2091|430/696||,T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1229G>A|p.Arg410Gln|1265/3035|1229/2031|410/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||2818|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022C>T|||||4451|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||4351|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761C>T|||||4451|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||3594|WARNING_TRANSCRIPT_NO_START_CODON
1	914852	rs13303368	G	C	13923.84	.	AC=393;ANN=C|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1276C>G|p.Gln426Glu|1276/3064|1276/2091|426/696||,C|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1216C>G|p.Gln406Glu|1252/3035|1216/2031|406/676||,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>G|||||2831|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>C|||||4464|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>C|||||4364|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>C|||||4464|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>C|||||3607|WARNING_TRANSCRIPT_NO_START_CODON
1	914876	rs13302983	T	C	25360.33	.	AC=686;ANN=C|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1252A>G|p.Ser418Gly|1252/3064|1252/2091|418/696||,C|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1192A>G|p.Ser398Gly|1228/3035|1192/2031|398/676||,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>G|||||2855|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022T>C|||||4488|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871T>C|||||4388|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761T>C|||||4488|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531T>C|||||3631|WARNING_TRANSCRIPT_NO_START_CODON
1	914940	rs13303033	T	C	19892.07	.	AC=446;ANN=C|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1188A>G|p.Ala396Ala|1188/3064|1188/2091|396/696||,C|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1128A>G|p.Ala376Ala|1164/3035|1128/2031|376/676||,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>G|||||2919|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022T>C|||||4552|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871T>C|||||4452|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761T>C|||||4552|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531T>C|||||3695|WARNING_TRANSCRIPT_NO_START_CODON
1	914958	.	G	A	89.45	.	AC=1;ANN=A|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.1170C>T|p.Pro390Pro|1170/3064|1170/2091|390/696||,A|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.1110C>T|p.Pro370Pro|1146/3035|1110/2031|370/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||2937|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||4570|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||4470|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||4570|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||3713|WARNING_TRANSCRIPT_NO_START_CODON
1	915227	rs13303355	A	G	36891.25	.	AC=717;ANN=G|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.901T>C|p.Leu301Leu|901/3064|901/2091|301/696||,G|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.841T>C|p.Leu281Leu|877/3035|841/2031|281/676||,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>C|||||3206|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022A>G|||||4839|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871A>G|||||4739|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761A>G|||||4839|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531A>G|||||3982|WARNING_TRANSCRIPT_NO_START_CODON
1	915264	rs113243246	G	A	2305.94	.	AC=50;ANN=A|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.864C>T|p.Ser288Ser|864/3064|864/2091|288/696||,A|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.804C>T|p.Ser268Ser|840/3035|804/2031|268/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||3243|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>A|||||4876|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||4776|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>A|||||4876|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||4019|WARNING_TRANSCRIPT_NO_START_CODON
1	915388	.	G	C	1114.49	.	AC=74;ANN=C|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.740C>G|p.Thr247Arg|740/3064|740/2091|247/696||,C|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.680C>G|p.Thr227Arg|716/3035|680/2031|227/676||,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>G|||||3367|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379409|protein_coding||c.*2022G>C|||||5000|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>C|||||4900|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379407|protein_coding||c.*1761G>C|||||5000|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>C|||||4143|WARNING_TRANSCRIPT_NO_START_CODON
1	915399	rs112622122	C	T	466.72	.	AC=22;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.729G>A|p.Pro243Pro|729/3064|729/2091|243/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.669G>A|p.Pro223Pro|705/3035|669/2031|223/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||3378|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871C>T|||||4911|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||4154|WARNING_TRANSCRIPT_NO_START_CODON
1	915400	.	G	A	28.08	.	AC=1;ANN=A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.728C>T|p.Pro243Leu|728/3064|728/2091|243/696||,A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.668C>T|p.Pro223Leu|704/3035|668/2031|223/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||3379|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871G>A|||||4912|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||4155|WARNING_TRANSCRIPT_NO_START_CODON
1	915427	.	A	G	18.25	.	AC=1;ANN=G|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.701T>C|p.Met234Thr|701/3064|701/2091|234/696||,G|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.641T>C|p.Met214Thr|677/3035|641/2031|214/676||,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>C|||||3406|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000379410|protein_coding||c.*1871A>G|||||4939|,G|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531A>G|||||4182|WARNING_TRANSCRIPT_NO_START_CODON
1	915490	.	G	A	485.59	.	AC=6;ANN=A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.638C>T|p.Pro213Leu|638/3064|638/2091|213/696||,A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.578C>T|p.Pro193Leu|614/3035|578/2031|193/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||3469|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||4245|WARNING_TRANSCRIPT_NO_START_CODON
1	915543	rs114358412	T	C	129.89	.	AC=9;ANN=C|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.585A>G|p.Pro195Pro|585/3064|585/2091|195/696||,C|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.525A>G|p.Pro175Pro|561/3035|525/2031|175/676||,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>G|||||3522|,C|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531T>C|||||4298|WARNING_TRANSCRIPT_NO_START_CODON
1	915565	rs118028394	G	A	27.19	.	AC=3;ANN=A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.563C>T|p.Thr188Met|563/3064|563/2091|188/696||,A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.503C>T|p.Thr168Met|539/3035|503/2031|168/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||3544|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||4320|WARNING_TRANSCRIPT_NO_START_CODON
1	915592	.	C	T	11.73	.	AC=1;ANN=T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.536G>A|p.Arg179His|536/3064|536/2091|179/696||,T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.476G>A|p.Arg159His|512/3035|476/2031|159/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||3571|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||4347|WARNING_TRANSCRIPT_NO_START_CODON
1	915594	.	C	T	117.95	.	AC=5;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.534G>A|p.Pro178Pro|534/3064|534/2091|178/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.474G>A|p.Pro158Pro|510/3035|474/2031|158/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||3573|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||4349|WARNING_TRANSCRIPT_NO_START_CODON
1	915614	.	T	A	117.11	.	AC=3;ANN=A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.514A>T|p.Thr172Ser|514/3064|514/2091|172/696||,A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.454A>T|p.Thr152Ser|490/3035|454/2031|152/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>T|||||3593|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531T>A|||||4369|WARNING_TRANSCRIPT_NO_START_CODON
1	915669	.	G	A	57.39	.	AC=1;ANN=A|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.459C>T|p.Asp153Asp|459/3064|459/2091|153/696||,A|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.399C>T|p.Asp133Asp|435/3035|399/2031|133/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||3648|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||4424|WARNING_TRANSCRIPT_NO_START_CODON
1	915952	.	G	T	33.66	.	AC=2;ANN=T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.176C>A|p.Pro59His|176/3064|176/2091|59/696||,T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.116C>A|p.Pro39His|152/3035|116/2031|39/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>A|||||3931|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>T|||||4707|WARNING_TRANSCRIPT_NO_START_CODON
1	915964	rs75620596	G	A	71.61	.	AC=1;ANN=A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.164C>T|p.Pro55Leu|164/3064|164/2091|55/696||,A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.104C>T|p.Pro35Leu|140/3035|104/2031|35/676||,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||3943|,A|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>A|||||4719|WARNING_TRANSCRIPT_NO_START_CODON
1	916014	rs115259302	C	T	380.6	.	AC=12;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|3/5|c.114G>A|p.Ala38Ala|114/3064|114/2091|38/696||,T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|3/5|c.54G>A|p.Ala18Ala|90/3035|54/2031|18/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||3993|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||4769|WARNING_TRANSCRIPT_NO_START_CODON
1	916071	.	C	T	53.44	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||4050|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531C>T|||||4826|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|2/4|c.91-34G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|2/4|c.31-34G>A||||||
1	916159	rs111400347	G	T	677.1	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>A|||||4138|,T|downstream_gene_variant|MODIFIER|PLEKHN1|ENSG00000187583|transcript|ENST00000491024|protein_coding||c.*531G>T|||||4914|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|2/4|c.91-122C>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|2/4|c.31-122C>A||||||
1	916347	.	G	A	26.61	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||4326|,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|2/4|c.90+170C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|2/4|c.30+170C>T||||||
1	916499	rs74357301	G	A	356.68	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||4478|,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|2/4|c.90+18C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|2/4|c.30+18C>T||||||
1	916534	rs61744472	C	T	754.76	.	AC=21;ANN=T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|2/5|c.73G>A|p.Gly25Ser|73/3064|73/2091|25/696||,T|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|2/5|c.13G>A|p.Gly5Ser|49/3035|13/2031|5/676||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||4513|
1	916549	rs6660139	A	G	18079.72	.	AC=561;ANN=G|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|2/5|c.58T>C|p.Trp20Arg|58/3064|58/2091|20/696||,G|5_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|2/5|c.-3T>C|||||3|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>C|||||4528|
1	916590	rs28566954	G	A	8541.67	.	AC=137;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||4569|,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-37C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-37C>T||||||
1	916662	rs56028034	A	C	11350.46	.	AC=162;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>G|||||4641|,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-109T>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-109T>G||||||
1	916667	rs114724422	C	T	1058.07	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||4646|,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-114G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-114G>A||||||
1	916702	.	A	T	19.84	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1T>A|||||4681|,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-149T>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-149T>A||||||
1	916756	.	T	C	26.53	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1A>G|||||4735|,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-203A>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-203A>G||||||
1	916769	.	C	T	8.96	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>A|||||4748|,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-216G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-216G>A||||||
1	916834	rs6694632	G	A	26637.41	.	AC=538;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||4813|,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-281C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-281C>T||||||
1	916838	rs114097763	G	A	740.71	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||4817|,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-285C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-285C>T||||||
1	916862	.	C	G	15.66	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1G>C|||||4841|,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-309G>C||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-309G>C||||||
1	916976	rs114479127	G	A	382.14	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000479361|retained_intron||n.-1C>T|||||4955|,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.54-423C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-7-423C>T||||||
1	917060	rs6605058	C	G	34250.3	.	AC=758;ANN=G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.53+385G>C||||||,G|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-8+385G>C||||||
1	917123	.	C	T	46.95	.	AC=1;ANN=T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.53+322G>A||||||,T|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-8+322G>A||||||
1	917315	rs7547878	G	A	6386.75	.	AC=138;ANN=A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.53+130C>T||||||,A|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-8+130C>T||||||
1	917401	.	T	C	111.35	.	AC=2;ANN=C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/4|c.53+44A>G||||||,C|intron_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/4|c.-8+44A>G||||||
1	917470	.	G	A	49.96	.	AC=1;ANN=A|missense_variant|MODERATE|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/5|c.28C>T|p.Arg10Cys|28/3064|28/2091|10/696||,A|5_prime_UTR_premature_start_codon_gain_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/5|c.-33C>T||||||,A|5_prime_UTR_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding|1/5|c.-33C>T|||||924|
1	917492	rs28434575	C	T	6395.56	.	AC=120;ANN=T|synonymous_variant|LOW|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding|1/5|c.6G>A|p.Pro2Pro|6/3064|6/2091|2/696||,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||19|
1	917640	rs41285816	G	A	9415.83	.	AC=168;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||143|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||167|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	917688	rs111479166	C	G	329.28	.	AC=16;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>C|||||191|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>C|||||215|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	917716	rs114920174	G	A	348.9	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||219|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||243|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	917796	.	C	A	117.81	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>T|||||299|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>T|||||323|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	917902	rs115916995	C	T	83.87	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||405|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||429|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	917906	rs117517354	C	T	40.75	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||409|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||433|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918032	.	C	T	41.01	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||535|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||559|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918060	.	C	T	4.95	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||563|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||587|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918067	.	A	G	164.92	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>C|||||570|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>C|||||594|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918097	.	C	T	36.15	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||600|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||624|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918192	.	G	A	81.98	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||695|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||719|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918238	rs28552711	C	G	10537.85	.	AC=166;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>C|||||741|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>C|||||765|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918270	rs6659460	C	T	9155.18	.	AC=146;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||773|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||797|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918305	.	G	A	105.82	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||808|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||832|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918313	rs115798828	G	A	85.87	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||816|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||840|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918384	rs13303118	G	T	29813.39	.	AC=514;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>A|||||887|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>A|||||911|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918434	.	G	A	55.58	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||937|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||961|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918463	rs72891194	C	T	86.57	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||966|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||990|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918481	.	C	T	245.34	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||984|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||1008|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918561	.	G	A	127.38	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||1064|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||1088|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918573	rs2341354	A	G	30330.51	.	AC=595;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>C|||||1076|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>C|||||1100|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918617	rs4970418	G	A	7538.98	.	AC=136;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||1120|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||1144|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918707	.	G	A	62.59	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||1210|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||1234|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918749	.	C	T	1245.62	.	AC=30;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||1252|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||1276|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918760	.	C	T	16.9	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||1263|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||1287|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918850	.	T	C	28.27	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||1353|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||1377|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	918863	.	C	T	38.8	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||1366|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||1390|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919037	rs112913661	C	A	93.28	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>T|||||1540|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>T|||||1564|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919127	rs28469033	T	C	11457.34	.	AC=204;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||1630|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||1654|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919136	rs114824944	T	G	671.46	.	AC=21;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>C|||||1639|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>C|||||1663|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919167	.	T	C	141.6	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||1670|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||1694|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919200	.	C	T	11.68	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||1703|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||1727|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919319	.	A	G	34.68	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>C|||||1822|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>C|||||1846|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919386	.	C	T	124.42	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||1889|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||1913|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919419	rs6605059	T	C	26120.85	.	AC=577;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||1922|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||1946|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919420	rs117434933	G	T	77.72	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>A|||||1923|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>A|||||1947|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919489	rs61606412	C	T	2179.28	.	AC=88;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||1992|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||2016|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:919426_919575|||||||||,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919501	rs4970414	G	T	22867.05	.	AC=509;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>A|||||2004|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>A|||||2028|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:919426_919575|||||||||,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919635	.	C	T	106.6	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||2138|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||2162|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:919626_919775|||||||||,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919855	rs116781904	G	A	2256.92	.	AC=84;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2358|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2382|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919868	.	G	A	169.96	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2371|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2395|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919927	rs61770779	G	A	156.57	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2430|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2454|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919961	.	T	C	211.64	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||2464|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||2488|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	919998	rs2341357	A	C	11112.97	.	AC=383;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>G|||||2501|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>G|||||2525|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920002	rs55746336	A	C	9025.04	.	AC=294;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>G|||||2505|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>G|||||2529|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920006	rs4039719	A	C	6488.9	.	AC=242;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>G|||||2509|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>G|||||2533|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920010	rs4039720	A	C	5238.13	.	AC=181;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>G|||||2513|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>G|||||2537|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920014	.	A	C	2871.64	.	AC=150;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>G|||||2517|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>G|||||2541|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920018	.	A	C	2463.75	.	AC=132;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>G|||||2521|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>G|||||2545|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920022	.	A	C	1797.04	.	AC=105;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>G|||||2525|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>G|||||2549|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920051	rs6656482	G	A	1850.73	.	AC=37;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2554|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2578|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920059	.	G	A	12.93	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2562|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2586|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920179	.	C	T	28.31	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||2682|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||2706|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920282	rs111389716	G	A	262.63	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2785|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2809|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920298	.	G	A	31.65	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2801|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2825|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920407	rs116642619	C	T	301.95	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||2910|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||2934|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920408	.	G	A	43.98	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||2911|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||2935|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920503	rs28896913	G	A	6948.96	.	AC=127;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3006|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3030|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920513	.	G	A	240.99	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3016|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3040|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920640	rs28869591	C	T	10209.24	.	AC=160;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||3143|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||3167|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920648	rs6677020	T	C	59086.77	.	AC=990;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||3151|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||3175|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920649	rs6659542	G	A	3064.48	.	AC=59;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3152|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3176|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920692	rs28878601	G	A	8894.0	.	AC=138;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3195|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3219|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920698	.	G	A	10.16	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3201|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3225|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920733	rs6677131	T	C	45488.96	.	AC=932;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||3236|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||3260|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920779	.	C	T	7.74	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||3282|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||3306|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920866	rs115884773	G	A	637.7	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3369|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3393|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920890	.	A	G	1671.31	.	AC=30;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>C|||||3393|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>C|||||3417|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920954	.	G	A	206.09	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3457|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3481|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	920977	rs55692389	T	C	11059.19	.	AC=163;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||3480|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||3504|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921061	.	C	G	246.48	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>C|||||3564|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>C|||||3588|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921071	rs78164078	G	A	2798.84	.	AC=61;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3574|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3598|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921137	.	C	T	48.92	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||3640|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||3664|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921242	.	C	T	236.41	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||3745|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||3769|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921245	.	C	T	155.91	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||3748|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||3772|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921336	.	A	G	188.13	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>C|||||3839|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>C|||||3863|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921384	.	C	G	50.44	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>C|||||3887|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>C|||||3911|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921387	rs115014500	G	A	1838.46	.	AC=38;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||3890|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||3914|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921425	.	C	T	91.0	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||3928|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||3952|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921438	.	C	T	323.26	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||3941|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||3965|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921543	.	C	T	1030.91	.	AC=25;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||4046|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||4070|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921570	rs6662128	T	C	16347.29	.	AC=526;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||4073|,C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37A>G|||||4097|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921594	.	C	T	22.99	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||4097|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||4121|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921595	.	G	A	18.32	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||4098|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||4122|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921631	.	A	G	87.79	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1T>C|||||4134|,G|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37T>C|||||4158|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921660	rs6703008	C	T	7262.18	.	AC=149;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||4163|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||4187|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921716	rs13303278	C	A	25144.17	.	AC=478;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>T|||||4219|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>T|||||4243|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921750	.	G	A	22.53	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||4253|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||4277|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	921982	.	G	A	78.57	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||4485|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||4509|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922009	rs6693747	G	A	13278.3	.	AC=186;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||4512|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||4536|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922011	.	G	A	255.93	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||4514|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||4538|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922045	.	G	A	87.0	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||4548|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||4572|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922104	.	C	T	1578.13	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>A|||||4607|,T|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>A|||||4631|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922274	.	C	A	113.92	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1G>T|||||4777|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37G>T|||||4801|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922443	.	G	A	62.16	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1C>T|||||4946|,A|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000341290|protein_coding||c.-37C>T|||||4970|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922483	rs114583033	T	C	6200.7	.	AC=134;ANN=C|upstream_gene_variant|MODIFIER|C1orf170|ENSG00000187642|transcript|ENST00000433179|protein_coding||c.-1A>G|||||4986|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922885	.	C	T	177.61	.	AC=4;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922908	.	C	T	71.35	.	AC=6;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922957	.	C	T	569.85	.	AC=13;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	922978	.	A	G	104.38	.	AC=1;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923076	rs6605060	A	G	47428.24	.	AC=932;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923126	.	G	A	88.93	.	AC=4;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923275	.	G	A	7.78	.	AC=2;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923330	.	G	A	155.0	.	AC=6;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923411	rs28455528	A	T	563.63	.	AC=14;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923457	.	C	T	178.62	.	AC=8;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923459	rs9442609	A	G	61220.43	.	AC=995;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923490	.	G	A	462.6	.	AC=18;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923533	.	G	C	69.92	.	AC=1;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923631	rs115435513	T	G	131.45	.	AC=6;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923749	rs9442610	T	C	32799.71	.	AC=812;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923977	.	A	G	281.25	.	AC=21;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	923978	rs67181021	A	G	843.6	.	AC=76;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924101	.	C	T	79.42	.	AC=1;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924102	.	G	A	43.21	.	AC=11;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924111	rs28447224	T	A	15300.5	.	AC=211;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924124	rs114972709	T	C	265.52	.	AC=16;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924143	rs112126323	C	G	34.17	.	AC=10;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924171	.	A	T	2266.69	.	AC=127;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924173	.	G	A	58.36	.	AC=2;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924180	rs76060389	A	T	11694.26	.	AC=208;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924194	rs36034299	T	A	25651.93	.	AC=388;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924199	rs34208189	G	T	32715.21	.	AC=439;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924235	rs28489602	G	A	30728.28	.	AC=417;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924248	rs113518934	T	G	17719.46	.	AC=277;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924255	rs59424352	T	G	10879.69	.	AC=173;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924263	rs28607403	A	T	8876.69	.	AC=149;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924273	.	A	G	1567.62	.	AC=101;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924281	rs28715279	T	G	474.26	.	AC=45;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924368	rs35562283	C	T	78188.03	.	AC=896;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924394	.	G	A	109.41	.	AC=13;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924438	rs113767508	A	G	43.2	.	AC=7;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924487	.	G	A	15.69	.	AC=2;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924528	rs34712273	C	A	50077.85	.	AC=627;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924545	.	T	C	15.94	.	AC=3;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924597	.	C	T	146.64	.	AC=2;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924603	rs28422907	T	C	59644.96	.	AC=882;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924629	rs28622096	A	G	58396.71	.	AC=982;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924711	.	G	A	57.33	.	AC=1;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924717	rs72468206	C	T	42.87	.	AC=2;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924718	.	G	A	158.4	.	AC=3;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924839	.	A	C	108.99	.	AC=2;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924876	.	T	C	92.5	.	AC=1;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924898	rs6665000	C	A	92808.04	.	AC=1040;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	924993	.	T	A	290.44	.	AC=6;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925114	.	G	C	26.77	.	AC=2;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925249	rs111876969	C	T	489.16	.	AC=8;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925471	.	G	A	37.24	.	AC=7;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925614	rs28884905	G	C	829.03	.	AC=32;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925620	.	C	T	823.58	.	AC=22;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925682	.	T	G	264.42	.	AC=6;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925684	rs6605061	T	C	31127.91	.	AC=777;ANN=C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925737	.	A	G	48.05	.	AC=1;ANN=G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925798	.	C	T	260.63	.	AC=11;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	925999	.	G	A	99.54	.	AC=2;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926014	.	C	T	220.69	.	AC=5;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926076	.	G	A	27.53	.	AC=1;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926147	.	G	A	61.68	.	AC=2;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926243	.	C	T	181.19	.	AC=4;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926244	.	G	A	52.08	.	AC=2;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926249	.	C	T	28.87	.	AC=1;ANN=T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926261	.	G	A	21.52	.	AC=5;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926338	.	G	A	10.45	.	AC=2;ANN=A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926351	rs6671243	C	T	55335.37	.	AC=969;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||4995|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926396	.	T	C	24.11	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||4950|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926431	rs4970403	A	T	87404.04	.	AC=1039;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>A|||||4915|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926485	.	T	C	147.54	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||4861|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926505	.	C	T	38.82	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||4841|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926508	.	C	T	254.96	.	AC=35;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||4838|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926595	.	T	C	91.48	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||4751|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926621	rs4970351	A	C	64215.04	.	AC=985;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>G|||||4725|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926628	.	C	T	29.0	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||4718|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926712	.	G	A	83.59	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||4634|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926842	.	G	A	429.4	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||4504|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926940	.	T	G	116.75	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>C|||||4406|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	926968	.	C	T	10173.6	.	AC=152;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||4378|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927063	.	A	G	37.8	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||4283|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927083	.	T	C	6.4	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||4263|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927309	rs2341362	T	C	67850.71	.	AC=993;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||4037|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927323	.	C	T	457.64	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||4023|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927472	rs111835751	C	T	586.4	.	AC=10;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||3874|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927497	.	C	G	130.1	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>C|||||3849|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927573	.	T	C	174.58	.	AC=4;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||3773|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927602	.	C	T	15.71	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||3744|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927609	.	G	A	874.35	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||3737|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927634	.	G	A	182.28	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||3712|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927693	.	T	C	159.94	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||3653|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927695	.	C	T	18.47	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||3651|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927713	.	G	T	45.81	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>A|||||3633|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927741	rs6665587	G	A	10760.8	.	AC=170;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||3605|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927745	.	T	C	73.7	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||3601|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927788	.	G	A	106.17	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||3558|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927813	.	G	A,C	69.56	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||3533|,C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>G|||||3533|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927824	.	A	C	1067.39	.	AC=24;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>G|||||3522|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	927934	.	T	C	136.11	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||3412|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928011	rs114170846	G	T	1572.13	.	AC=24;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>A|||||3335|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928017	.	T	C	5.71	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||3329|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928021	.	A	C	36.81	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>G|||||3325|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928077	.	T	C	41.2	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||3269|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928270	.	G	C	37.06	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>G|||||3076|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928288	rs111308432	G	A	3190.91	.	AC=53;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||3058|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928297	rs112169476	G	A	5070.52	.	AC=68;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||3049|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928312	rs74045070	T	C	424.39	.	AC=12;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>G|||||3034|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928338	.	C	T	1772.97	.	AC=86;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||3008|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928358	.	T	G	70.35	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>C|||||2988|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928373	rs79271194	A	G	23329.6	.	AC=650;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||2973|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928379	.	G	A	10.5	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2967|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928416	rs111754459	G	A	5915.24	.	AC=169;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2930|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928442	.	G	A	195.21	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2904|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928462	.	G	A	692.27	.	AC=33;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2884|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928488	.	G	A	115.18	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2858|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928520	rs35002855	A	G	34468.85	.	AC=830;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||2826|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928534	.	A	G	53.39	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||2812|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928578	rs28394749	G	A	69472.91	.	AC=975;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2768|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928598	rs114605661	C	G	2712.36	.	AC=50;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>C|||||2748|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928613	.	C	A	434.85	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>T|||||2733|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928666	.	C	T	64.06	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||2680|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928744	rs74045071	T	G	1299.36	.	AC=32;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>C|||||2602|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928807	.	G	A	5.71	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2539|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928836	rs9777703	C	T	59822.6	.	AC=929;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||2510|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928860	rs117787650	C	G	28.88	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>C|||||2486|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928916	.	C	T	249.33	.	AC=7;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||2430|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928969	rs115490086	C	T	1739.05	.	AC=51;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||2377|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	928970	.	G	A	26.72	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2376|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929040	.	G	A	23.0	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2306|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929059	.	G	A	70.11	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2287|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929175	rs116048091	G	A	271.39	.	AC=9;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2171|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929190	rs9777939	A	G	50788.39	.	AC=934;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||2156|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929279	.	G	A	40.76	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||2067|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929316	rs9777893	C	T	6626.36	.	AC=317;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||2030|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929321	rs13302916	A	C	8604.01	.	AC=378;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>G|||||2025|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929327	rs13302924	A	G	31182.65	.	AC=793;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||2019|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929550	.	A	C	371.95	.	AC=14;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>G|||||1796|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>G|||||4792|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>G|||||4794|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>G|||||4796|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>G|||||4800|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929564	.	C	T	4.48	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||1782|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||4778|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||4780|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||4782|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||4786|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929565	.	G	T	8994.25	.	AC=151;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>A|||||1781|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>A|||||4777|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>A|||||4779|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>A|||||4781|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>A|||||4785|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929787	.	C	T	23.17	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||1559|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||4555|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||4557|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||4559|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||4563|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929896	.	C	T	17.36	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||1450|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||4446|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||4448|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||4450|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||4454|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929909	.	G	A	92.76	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||1437|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||4433|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||4435|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||4437|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||4441|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929959	.	G	A	41.23	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||1387|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||4383|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||4385|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||4387|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||4391|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929964	.	T	G	11.6	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086A>C|||||1382|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>C|||||4378|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>C|||||4380|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>C|||||4382|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>C|||||4386|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	929965	.	C	T	58.17	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||1381|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||4377|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||4379|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||4381|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||4385|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930058	rs72631893	C	A	312.13	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>T|||||1288|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>T|||||4284|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>T|||||4286|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>T|||||4288|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>T|||||4292|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930097	.	A	G	58.71	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||1249|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||4245|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||4247|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||4249|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||4253|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930134	.	G	A	46.52	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||1212|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||4208|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||4210|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||4212|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||4216|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930246	.	G	A	145.68	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||1100|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||4096|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||4098|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||4100|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||4104|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930299	rs116623724	G	A	95.46	.	AC=4;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||1047|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||4043|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||4045|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||4047|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||4051|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930329	rs3128108	C	T	10006.88	.	AC=181;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||1017|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||4013|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||4015|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||4017|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||4021|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930367	.	C	T	15.54	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||979|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||3975|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||3977|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||3979|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||3983|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930377	rs3128109	C	T	11579.84	.	AC=198;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||969|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||3965|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||3967|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||3969|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||3973|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930467	.	A	G	59.54	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||879|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||3875|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||3877|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||3879|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||3883|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930533	rs3128110	C	G	16916.12	.	AC=326;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>C|||||813|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>C|||||3809|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>C|||||3811|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>C|||||3813|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>C|||||3817|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930567	rs3121574	A	G	17603.8	.	AC=322;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||779|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||3775|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||3777|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||3779|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||3783|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930661	.	G	A	31.97	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||685|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||3681|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||3683|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||3685|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||3689|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930751	rs3128111	C	G	23180.34	.	AC=339;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>C|||||595|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>C|||||3591|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>C|||||3593|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>C|||||3595|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>C|||||3599|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930823	.	G	C	25.14	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>G|||||523|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>G|||||3519|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>G|||||3521|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>G|||||3523|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>G|||||3527|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930852	.	G	A	12.28	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||494|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||3490|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||3492|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||3494|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||3498|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930923	rs2710882	A	G	32607.53	.	AC=708;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||423|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||3419|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||3421|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||3423|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||3427|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	930935	.	G	C	125.85	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>G|||||411|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>G|||||3407|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>G|||||3409|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>G|||||3411|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>G|||||3415|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931004	.	A	C	58.67	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>G|||||342|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>G|||||3338|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>G|||||3340|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>G|||||3342|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>G|||||3346|,C|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931014	rs2710881	A	G	31414.19	.	AC=777;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||332|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||3328|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||3330|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||3332|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||3336|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931045	.	C	T	12.31	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||301|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||3297|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||3299|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||3301|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||3305|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931057	.	C	T	188.54	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||289|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||3285|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||3287|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||3289|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||3293|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931116	.	G	A	13.4	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||230|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||3226|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||3228|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||3230|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||3234|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931151	.	G	A	26.32	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||195|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||3191|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||3193|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||3195|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||3199|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931166	rs2710880	A	G	7197.18	.	AC=227;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086T>C|||||180|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||3176|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||3178|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||3180|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||3184|,G|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931229	rs9697692	C	T	1956.01	.	AC=79;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||117|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||3113|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||3115|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||3117|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||3121|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931237	.	G	A	139.29	.	AC=8;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||109|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||3105|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||3107|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||3109|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||3113|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931313	.	C	T	24.92	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086G>A|||||33|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||3029|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||3031|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||3033|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||3037|,T|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931339	rs59628617	G	A	1348.36	.	AC=38;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.*2086C>T|||||7|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||3003|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||3005|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||3007|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||3011|,A|intergenic_region|MODIFIER|C1orf170-RP11-54O7.17|ENSG00000187642-ENSG00000272512|intergenic_region|ENSG00000187642-ENSG00000272512|||||||||
1	931362	rs2799060	G	A	12806.02	.	AC=278;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2980|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2982|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2984|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2988|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.2070C>T||||||
1	931429	.	G	A	13.68	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2913|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2915|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2917|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2921|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.2003C>T||||||
1	931455	rs28580809	C	A	1167.8	.	AC=33;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>T|||||2887|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>T|||||2889|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>T|||||2891|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>T|||||2895|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1977G>T||||||
1	931484	.	G	A	95.65	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2858|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2860|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2862|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2866|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1948C>T||||||
1	931500	rs74718486	C	T	6784.88	.	AC=135;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||2842|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||2844|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||2846|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||2850|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1932G>A||||||
1	931508	rs2799061	T	A	45210.69	.	AC=889;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>T|||||2834|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>T|||||2836|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>T|||||2838|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>T|||||2842|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1924A>T||||||
1	931513	rs111473305	A	C	831.13	.	AC=32;ANN=C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>G|||||2829|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>G|||||2831|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>G|||||2833|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>G|||||2837|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1919T>G||||||
1	931548	rs2799062	G	T	6128.01	.	AC=142;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>A|||||2794|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>A|||||2796|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>A|||||2798|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>A|||||2802|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1884C>A||||||
1	931568	.	G	A	25.41	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2774|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2776|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2778|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2782|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1864C>T||||||
1	931715	rs2465138	C	A	136.29	.	AC=26;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>T|||||2627|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>T|||||2629|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>T|||||2631|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>T|||||2635|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1717G>T||||||
1	931730	rs2005437	A	G	32240.13	.	AC=683;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||2612|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||2614|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||2616|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||2620|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1702T>C||||||
1	931788	.	G	A	766.69	.	AC=52;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2554|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2556|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2558|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2562|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1644C>T||||||
1	931790	rs4989876	T	G	43.05	.	AC=9;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>C|||||2552|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>C|||||2554|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>C|||||2556|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>C|||||2560|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1642A>C||||||
1	931803	rs1891908	C	T	1001.23	.	AC=67;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||2539|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||2541|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||2543|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||2547|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1629G>A||||||
1	931807	rs4989879	G	A	172.37	.	AC=30;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2535|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2537|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2539|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2543|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1625C>T||||||
1	931838	rs4989880	A	G	327.8	.	AC=29;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||2504|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||2506|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||2508|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||2512|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1594T>C||||||
1	931869	rs113302118	C	T	281.4	.	AC=33;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||2473|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||2475|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||2477|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||2481|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1563G>A||||||
1	931873	rs2002848	A	G	427.72	.	AC=44;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||2469|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||2471|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||2473|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||2477|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1559T>C||||||
1	931880	rs2710878	G	A	239.95	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2462|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2464|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2466|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2470|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1552C>T||||||
1	931904	rs112584592	G	A	172.75	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2438|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2440|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2442|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2446|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1528C>T||||||
1	931939	rs13303155	G	A	8883.4	.	AC=218;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2403|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2405|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2407|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2411|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1493C>T||||||
1	931947	.	C	T	863.32	.	AC=51;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||2395|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||2397|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||2399|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||2403|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1485G>A||||||
1	931955	rs4399103	T	G	6048.26	.	AC=169;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>C|||||2387|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>C|||||2389|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>C|||||2391|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>C|||||2395|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1477A>C||||||
1	931970	rs71509450	A	G	334.93	.	AC=34;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||2372|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||2374|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||2376|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||2380|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1462T>C||||||
1	931997	rs28453775	C	G	607.41	.	AC=55;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>C|||||2345|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>C|||||2347|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>C|||||2349|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>C|||||2353|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1435G>C||||||
1	932001	rs112370897	C	T	313.41	.	AC=25;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||2341|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||2343|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||2345|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||2349|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1431G>A||||||
1	932005	rs4537497	A	G	132.49	.	AC=18;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||2337|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||2339|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||2341|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||2345|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1427T>C||||||
1	932036	rs113797979	G	A	185.84	.	AC=24;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2306|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2308|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2310|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2314|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1396C>T||||||
1	932054	rs13302969	G	T	5723.61	.	AC=254;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>A|||||2288|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>A|||||2290|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>A|||||2292|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>A|||||2296|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1378C>A||||||
1	932067	rs2710877	T	C	41.57	.	AC=9;ANN=C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>G|||||2275|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>G|||||2277|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>G|||||2279|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>G|||||2283|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1365A>G||||||
1	932071	rs111786835	G	A	243.98	.	AC=28;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2271|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2273|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2275|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2279|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1361C>T||||||
1	932079	rs55683483	C	T	195.58	.	AC=18;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||2263|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||2265|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||2267|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||2271|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1353G>A||||||
1	932087	rs4350142	T	G	1229.57	.	AC=80;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>C|||||2255|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>C|||||2257|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>C|||||2259|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>C|||||2263|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1345A>C||||||
1	932102	rs3121573	G	A	129.17	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2240|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2242|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2244|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2248|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1330C>T||||||
1	932110	rs4997456	A	G	81.6	.	AC=11;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||2232|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||2234|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||2236|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||2240|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1322T>C||||||
1	932132	rs36187213	C	T	129.88	.	AC=16;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||2210|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||2212|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||2214|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||2218|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1300G>A||||||
1	932167	rs111564518	G	A	148.68	.	AC=19;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2175|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2177|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2179|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2183|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1265C>T||||||
1	932233	.	G	A	152.27	.	AC=12;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2109|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2111|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2113|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2117|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1199C>T||||||
1	932248	.	G	A	39.65	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2094|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2096|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2098|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2102|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1184C>T||||||
1	932310	rs28645261	G	A	585.59	.	AC=21;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||2032|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||2034|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||2036|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||2040|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1122C>T||||||
1	932378	.	G	A	184.58	.	AC=6;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||1964|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||1966|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||1968|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||1972|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1054C>T||||||
1	932408	rs115516517	T	C	28.57	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>G|||||1934|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>G|||||1936|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>G|||||1938|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>G|||||1942|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.1024A>G||||||
1	932457	rs1891910	G	A	11134.93	.	AC=178;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||1885|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||1887|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||1889|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||1893|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.975C>T||||||
1	932487	.	C	T	11.12	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||1855|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||1857|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||1859|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||1863|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.945G>A||||||
1	932488	.	T	C	32.92	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>G|||||1854|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>G|||||1856|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>G|||||1858|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>G|||||1862|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.944A>G||||||
1	932504	.	G	A	525.34	.	AC=11;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||1838|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||1840|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||1842|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||1846|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.928C>T||||||
1	932535	.	C	T	66.13	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||1807|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||1809|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||1811|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||1815|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.897G>A||||||
1	932583	.	G	T	112.1	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>A|||||1759|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>A|||||1761|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>A|||||1763|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>A|||||1767|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.849C>A||||||
1	932591	rs115046152	T	C	52.53	.	AC=1;ANN=C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>G|||||1751|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>G|||||1753|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>G|||||1755|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>G|||||1759|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.841A>G||||||
1	932618	rs3128112	C	G	49045.7	.	AC=874;ANN=G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>C|||||1724|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>C|||||1726|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>C|||||1728|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>C|||||1732|,G|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.814G>C||||||
1	932638	rs112051535	G	A	354.28	.	AC=14;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||1704|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||1706|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||1708|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||1712|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.794C>T||||||
1	932718	.	C	T	41.32	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||1624|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||1626|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||1628|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||1632|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.714G>A||||||
1	932886	.	C	T	203.01	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||1456|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||1458|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||1460|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||1464|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.546G>A||||||
1	933027	.	G	A	111.02	.	AC=7;ANN=A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||1315|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||1317|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||1319|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||1323|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.405C>T||||||
1	933045	.	C	T	17.63	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||1297|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||1299|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||1301|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||1305|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.387G>A||||||
1	933059	.	C	T	6.46	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||1283|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||1285|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||1287|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||1291|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.373G>A||||||
1	933089	.	T	C	68.66	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943A>G|||||1253|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804A>G|||||1255|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038A>G|||||1257|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578A>G|||||1261|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.343A>G||||||
1	933315	.	C	T	165.83	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||1027|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||1029|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||1031|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||1035|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.117G>A||||||
1	933368	.	C	T	86.93	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||974|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||976|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||978|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||982|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA|1/1|n.64G>A||||||
1	933447	rs115202918	G	A	935.28	.	AC=31;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||16|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||895|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||897|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||899|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||903|,A|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	933589	rs116625239	C	T	111.26	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||158|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||753|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||755|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||757|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||761|,T|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	933736	.	C	T	51.15	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||305|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>A|||||606|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>A|||||608|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>A|||||610|,T|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>A|||||614|,T|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	933788	rs114141044	G	A	270.98	.	AC=9;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||357|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||554|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||556|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||558|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||562|,A|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	933790	rs9442392	G	A	10642.08	.	AC=280;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||359|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||552|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||554|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||556|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||560|,A|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	933908	.	G	A	85.42	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||477|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||434|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||436|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||438|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||442|,A|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	933909	.	G	A	83.57	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||478|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||433|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||435|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||437|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||441|,A|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	933972	.	A	C	32.95	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1T>G|||||541|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>G|||||370|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>G|||||372|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>G|||||374|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>G|||||378|,C|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	934099	rs2710867	G	C	7148.25	.	AC=293;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>G|||||668|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>G|||||243|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>G|||||245|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>G|||||247|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>G|||||251|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:934006_934155|||||||||,C|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	934106	rs2799063	A	G	7348.09	.	AC=277;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1T>C|||||675|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943T>C|||||236|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804T>C|||||238|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038T>C|||||240|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578T>C|||||244|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:934006_934155|||||||||,G|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	934121	rs2488989	G	A	602.34	.	AC=35;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||690|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>T|||||221|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>T|||||223|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||225|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||229|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:934006_934155|||||||||,A|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	934130	rs9697384	G	C	385.72	.	AC=23;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>G|||||699|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943C>G|||||212|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804C>G|||||214|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>G|||||216|,C|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>G|||||220|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:934006_934155|||||||||,C|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	934144	rs9697551	C	G	1975.3	.	AC=96;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||713|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>C|||||198|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>C|||||200|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>C|||||202|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>C|||||206|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:934006_934155|||||||||,G|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	934180	.	C	G	10.17	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||749|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.*943G>C|||||162|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.*804G>C|||||164|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038G>C|||||166|,G|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578G>C|||||170|,G|intergenic_region|MODIFIER|RP11-54O7.17-HES4|ENSG00000272512-ENSG00000188290|intergenic_region|ENSG00000272512-ENSG00000188290|||||||||
1	934345	rs9697457	G	A	289.38	.	AC=10;ANN=A|splice_region_variant|LOW|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|4/4|c.*94C>T||||||,A|3_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|3/3|c.*94C>T|||||94|,A|3_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|4/4|c.*94C>T|||||94|,A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||914|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.*1038C>T|||||1|,A|downstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.*578C>T|||||5|
1	934385	.	G	A	19.09	.	AC=5;ANN=A|3_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|3/3|c.*54C>T|||||54|,A|3_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|4/4|c.*54C>T|||||54|,A|3_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding|3/3|c.*54C>T|||||54|,A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||954|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:934366_934515|||||||||,A|non_coding_exon_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron|2/2|n.999C>T||||||
1	935046	rs113602214	G	A	1195.1	.	AC=54;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||1615|,A|intron_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|1/2|c.282+26C>T||||||,A|intron_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|2/3|c.204+26C>T||||||,A|intron_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding|1/2|c.109-53C>T||||||,A|non_coding_exon_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron|1/2|n.431C>T||||||
1	935136	.	C	A	17.99	.	AC=1;ANN=A|missense_variant|MODERATE|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|1/3|c.218G>T|p.Arg73Leu|417/1040|218/744|73/247||,A|missense_variant|MODERATE|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|2/4|c.140G>T|p.Arg47Leu|278/899|140/666|47/221||,A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>T|||||1705|,A|intron_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding|1/2|c.108+110G>T||||||,A|non_coding_exon_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron|1/2|n.341G>T||||||
1	935222	rs2298214	C	A	5110.66	.	AC=175;ANN=A|missense_variant|MODERATE|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|1/3|c.132G>T|p.Arg44Ser|331/1040|132/744|44/247||,A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>T|||||1791|,A|intron_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|1/3|c.108+24G>T||||||,A|intron_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding|1/2|c.108+24G>T||||||,A|non_coding_exon_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron|1/2|n.255G>T||||||
1	935398	.	G	A	126.1	.	AC=11;ANN=A|5_prime_UTR_premature_start_codon_gain_variant|LOW|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|1/3|c.-45C>T||||||,A|5_prime_UTR_premature_start_codon_gain_variant|LOW|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|1/4|c.-45C>T||||||,A|5_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|1/3|c.-45C>T|||||45|,A|5_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|1/4|c.-45C>T|||||45|,A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||1967|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||37|,A|non_coding_exon_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron|1/2|n.79C>T||||||
1	935459	rs3128113	A	G	5160.52	.	AC=205;ANN=G|5_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|1/3|c.-106T>C|||||106|,G|5_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding|1/4|c.-106T>C|||||106|,G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1T>C|||||2028|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9T>C|||||98|,G|non_coding_exon_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron|1/2|n.18T>C||||||
1	935492	rs3121571	G	T	7271.12	.	AC=262;ANN=T|5_prime_UTR_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding|1/3|c.-139C>A|||||139|,T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>A|||||2061|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>A|||||1|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>A|||||16|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>A|||||131|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:935486_935635|||||||||
1	935659	.	C	T	90.58	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||2228|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||107|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||168|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||183|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||298|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	935663	.	C	G	33.58	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||2232|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>C|||||111|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>C|||||172|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>C|||||187|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>C|||||302|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	935671	rs116904365	C	G	696.85	.	AC=49;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||2240|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>C|||||119|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>C|||||180|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>C|||||195|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>C|||||310|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	935715	rs3128114	C	T	1384.05	.	AC=69;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||2284|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||163|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||224|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||239|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||354|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	935833	rs3128115	C	G	8607.38	.	AC=328;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||2402|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>C|||||281|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>C|||||342|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>C|||||357|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>C|||||472|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:935766_935915|||||||||,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	935932	rs35310704	C	G	673.0	.	AC=31;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||2501|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>C|||||380|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>C|||||441|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>C|||||456|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>C|||||571|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936066	.	G	C	21.39	.	AC=3;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>G|||||2635|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>G|||||514|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>G|||||575|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>G|||||590|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>G|||||705|,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936111	rs1936360	C	T	13331.26	.	AC=337;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||2680|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||559|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||620|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||635|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||750|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936124	rs114466987	G	A	13.88	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||2693|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||572|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||633|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||648|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||763|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936194	rs3121570	A	G	19343.73	.	AC=462;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1T>C|||||2763|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200T>C|||||642|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139T>C|||||703|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1T>C|||||718|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9T>C|||||833|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:936166_936315|||||||||,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936210	rs3121569	C	A	20790.3	.	AC=462;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>T|||||2779|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>T|||||658|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>T|||||719|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>T|||||734|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>T|||||849|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:936166_936315|||||||||,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936319	.	G	A	17.33	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||2888|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||767|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||828|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||843|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||958|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936414	.	G	A	456.13	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||2983|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||862|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||923|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||938|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||1053|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936487	rs116607870	C	G	553.45	.	AC=25;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||3056|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>C|||||935|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>C|||||996|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>C|||||1011|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>C|||||1126|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:936466_936615|||||||||,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936526	.	C	T	46.82	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||3095|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||974|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||1035|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||1050|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||1165|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:936466_936615|||||||||,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936580	.	G	A	43.55	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||3149|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||1028|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||1089|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||1104|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||1219|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:936466_936615|||||||||,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936674	.	G	A	42.62	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||3243|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||1122|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||1183|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||1198|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||1313|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936687	rs114518990	C	A	372.6	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>T|||||3256|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>T|||||1135|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>T|||||1196|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>T|||||1211|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>T|||||1326|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936713	rs61766282	G	T	1706.57	.	AC=76;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>A|||||3282|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>A|||||1161|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>A|||||1222|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>A|||||1237|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>A|||||1352|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936848	.	G	C	139.71	.	AC=4;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>G|||||3417|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>G|||||1296|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>G|||||1357|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>G|||||1372|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>G|||||1487|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:936846_936995|||||||||,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	936968	.	C	T	26.77	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||3537|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||1416|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||1477|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||1492|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||1607|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:936846_936995|||||||||,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937131	.	G	T	27.45	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>A|||||3700|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>A|||||1579|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>A|||||1640|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>A|||||1655|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>A|||||1770|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937250	rs28615823	C	G	1281.44	.	AC=63;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>C|||||3819|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>C|||||1698|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>C|||||1759|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>C|||||1774|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>C|||||1889|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937398	.	G	A	23.41	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||3967|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||1846|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||1907|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||1922|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2037|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:937286_937435|||||||||,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937432	rs111758243	A	G	72.78	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1T>C|||||4001|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200T>C|||||1880|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139T>C|||||1941|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1T>C|||||1956|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9T>C|||||2071|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:937286_937435|||||||||,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937491	rs115084829	G	A	101.06	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4060|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||1939|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2000|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2015|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2130|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937529	.	G	A	290.9	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4098|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||1977|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2038|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2053|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2168|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937673	.	G	A	370.15	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4242|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||2121|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2182|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2197|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2312|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937688	rs2489000	T	C	27273.69	.	AC=765;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1A>G|||||4257|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200A>G|||||2136|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139A>G|||||2197|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1A>G|||||2212|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9A>G|||||2327|,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937725	.	C	T	28.57	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||4294|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||2173|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||2234|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||2249|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||2364|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937761	.	T	C	65.85	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1A>G|||||4330|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200A>G|||||2209|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139A>G|||||2270|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1A>G|||||2285|,C|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9A>G|||||2400|,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937778	rs116316555	C	T	743.2	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||4347|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||2226|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||2287|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||2302|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||2417|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937796	rs9777993	T	A	801.15	.	AC=61;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1A>T|||||4365|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200A>T|||||2244|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139A>T|||||2305|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1A>T|||||2320|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9A>T|||||2435|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937824	.	G	A	19.33	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4393|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||2272|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2333|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2348|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2463|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	937878	.	G	A	26.39	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4447|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||2326|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2387|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2402|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2517|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938044	.	G	A	81.32	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4613|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||2492|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2553|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2568|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2683|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938116	rs2710869	T	G	35301.4	.	AC=806;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1A>C|||||4685|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200A>C|||||2564|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139A>C|||||2625|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1A>C|||||2640|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9A>C|||||2755|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938125	rs2710868	G	A	6527.75	.	AC=159;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4694|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||2573|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2634|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2649|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2764|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938213	rs2799058	A	G	42171.15	.	AC=793;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1T>C|||||4782|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200T>C|||||2661|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139T>C|||||2722|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1T>C|||||2737|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9T>C|||||2852|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938220	rs9697602	C	T	1048.9	.	AC=27;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||4789|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||2668|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||2729|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||2744|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||2859|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938300	rs4595317	G	A	2726.52	.	AC=68;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1C>T|||||4869|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||2748|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||2809|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||2824|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||2939|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938372	rs116190793	C	T	101.45	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.17|ENSG00000272512|transcript|ENST00000606034|lincRNA||n.-1G>A|||||4941|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||2820|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||2881|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||2896|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||3011|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938796	.	C	T	55.81	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||3244|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||3305|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||3320|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||3435|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||4660|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	938834	.	C	G	6.85	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>C|||||3282|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>C|||||3343|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>C|||||3358|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>C|||||3473|,G|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>C|||||4622|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939044	.	G	A	17.46	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||3492|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||3553|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||3568|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||3683|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||4412|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939184	.	G	A	18.04	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||3632|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||3693|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||3708|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||3823|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||4272|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939215	rs79589496	C	T	554.47	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||3663|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||3724|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||3739|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||3854|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||4241|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939259	.	T	A	30.72	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200A>T|||||3707|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139A>T|||||3768|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1A>T|||||3783|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9A>T|||||3898|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>T|||||4197|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939398	.	G	T	8.63	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>A|||||3846|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>A|||||3907|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>A|||||3922|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>A|||||4037|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>A|||||4058|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939433	.	G	A	8.94	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||3881|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||3942|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||3957|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||4072|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||4023|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939436	.	T	A	54.83	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200A>T|||||3884|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139A>T|||||3945|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1A>T|||||3960|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9A>T|||||4075|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>T|||||4020|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939805	.	C	T	91.26	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4253|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4314|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4329|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||4444|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3651|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939813	rs115139441	C	T	1462.83	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4261|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4322|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4337|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||4452|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3643|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	939950	rs2799057	C	T	495.92	.	AC=17;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4398|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4459|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4474|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||4589|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3506|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940005	rs2799056	A	G	15147.02	.	AC=271;ANN=G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200T>C|||||4453|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139T>C|||||4514|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1T>C|||||4529|,G|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9T>C|||||4644|,G|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154T>C|||||3451|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940061	rs113961618	C	T	61.84	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4509|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4570|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4585|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||4700|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3395|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940096	rs4503294	C	T	31160.47	.	AC=560;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4544|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4605|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4620|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||4735|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3360|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940201	.	C	T	135.26	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4649|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4710|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4725|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||4840|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3255|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940203	rs35940137	G	A	1606.2	.	AC=40;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||4651|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||4712|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||4727|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||4842|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||3253|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940222	.	G	A	51.3	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||4670|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139C>T|||||4731|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1C>T|||||4746|,A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9C>T|||||4861|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||3234|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940237	rs115180276	C	T	148.75	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4685|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4746|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4761|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9G>A|||||4876|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3219|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940330	.	A	T	21.73	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200T>A|||||4778|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139T>A|||||4839|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1T>A|||||4854|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000484667|protein_coding||c.-9T>A|||||4969|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154T>A|||||3126|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940380	rs117029060	C	T	77.83	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200G>A|||||4828|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000304952|protein_coding||c.-139G>A|||||4889|,T|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000481869|retained_intron||n.-1G>A|||||4904|,T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||3076|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940517	.	G	A	45.0	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|HES4|ENSG00000188290|transcript|ENST00000428771|protein_coding||c.-200C>T|||||4965|,A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||2939|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940577	.	G	T	48.0	.	AC=4;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>A|||||2879|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940634	rs116670667	T	C	139.01	.	AC=2;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>G|||||2822|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:940586_940735|||||||||,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940945	.	C	A	19.72	.	AC=3;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>T|||||2511|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940992	rs118055518	A	C	66.19	.	AC=13;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154T>G|||||2464|,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	940993	.	C	G	19.01	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>C|||||2463|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941077	.	C	T	161.95	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||2379|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941101	rs114443588	G	T	658.3	.	AC=32;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>A|||||2355|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941152	rs80029219	G	T	19.77	.	AC=5;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>A|||||2304|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941166	rs114486925	T	G	25.49	.	AC=2;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>C|||||2290|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941188	.	G	A	61.72	.	AC=5;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||2268|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941197	.	G	A	49.74	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||2259|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941217	.	C	T	64.04	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||2239|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941250	.	C	T	75.87	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||2206|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941284	rs3128116	C	T	9611.02	.	AC=231;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||2172|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941309	.	C	T	127.61	.	AC=6;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||2147|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941316	.	G	A	42.48	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||2140|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941334	rs57683598	G	A	8860.95	.	AC=247;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||2122|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941355	rs116283685	C	T	414.9	.	AC=11;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||2101|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941430	.	G	A	30.18	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||2026|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941528	.	A	G	40.54	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154T>C|||||1928|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941539	rs9778087	C	T	13433.65	.	AC=312;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||1917|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941570	rs111573110	T	A	19.68	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>T|||||1886|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941619	rs28615107	C	T	1668.68	.	AC=55;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||1837|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941754	.	A	G	7.78	.	AC=1;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154T>C|||||1702|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941898	.	C	T	15.54	.	AC=2;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||1558|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	941960	.	G	A	5.9	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||1496|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942030	rs114204204	G	A	1372.16	.	AC=39;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||1426|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:942026_942175|||||||||,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942143	.	C	T	31.02	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||1313|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:942026_942175|||||||||,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942292	rs114970381	T	A	715.28	.	AC=20;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>T|||||1164|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942406	rs9697552	G	A	979.73	.	AC=29;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||1050|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||4971|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942452	.	G	A	40.78	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||1004|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||4925|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942469	rs114829796	C	T	431.12	.	AC=8;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||987|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||4908|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942470	.	G	A	49.97	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||986|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||4907|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942474	rs77742824	C	T	81.58	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||982|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||4903|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942489	.	C	T	43.36	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||967|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||4888|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942609	rs116505294	T	C	1891.86	.	AC=30;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>G|||||847|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||4768|,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942636	rs76233940	G	A	9115.91	.	AC=122;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||820|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||4741|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942687	.	C	T	217.8	.	AC=3;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||769|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||4690|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942705	rs9697682	A	G	5968.2	.	AC=131;ANN=G|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154T>C|||||751|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>C|||||4672|,G|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942738	rs9697440	G	C	1183.87	.	AC=51;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>G|||||718|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>G|||||4639|,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942839	.	G	A	60.78	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||617|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||4538|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942894	.	G	A	881.75	.	AC=22;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154C>T|||||562|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||4483|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	942925	.	T	C	59.98	.	AC=3;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>G|||||531|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||4452|,C|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	943034	.	C	T	7.77	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||422|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||4343|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	943232	.	T	A	40.66	.	AC=1;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154A>T|||||224|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>T|||||4145|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	943250	rs3121568	C	T	8724.78	.	AC=361;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>A|||||206|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||4127|,T|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	943384	.	C	A	87.46	.	AC=10;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.*154G>T|||||72|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>T|||||3993|,A|intergenic_region|MODIFIER|HES4-RP11-54O7.10|ENSG00000188290-ENSG00000231702|intergenic_region|ENSG00000188290-ENSG00000231702|||||||||
1	943468	rs3121567	T	C	47936.31	.	AC=962;ANN=C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||3909|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene|1/1|n.142A>G||||||
1	943552	.	T	A	34.34	.	AC=2;ANN=A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>T|||||3825|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene|1/1|n.58A>T||||||
1	943578	.	C	T	71.02	.	AC=1;ANN=T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||3799|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene|1/1|n.32G>A||||||
1	943619	.	C	T	598.58	.	AC=15;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||10|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||3758|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943686	.	C	T	124.53	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||77|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||3691|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943687	rs2465140	G	C	23552.36	.	AC=374;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>G|||||78|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>G|||||3690|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943710	rs75905136	T	A	85.49	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>T|||||101|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>T|||||3667|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943712	rs74045075	T	C	2882.52	.	AC=57;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||103|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||3665|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943749	rs114594699	T	A	934.09	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>T|||||140|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>T|||||3628|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943907	rs2488992	C	G	70085.95	.	AC=996;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>C|||||298|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>G|||||4896|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>C|||||3470|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943911	rs116192084	C	G	125.36	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>C|||||302|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>G|||||4892|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>C|||||3466|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943961	.	A	C	130.33	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>G|||||352|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>C|||||4842|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>G|||||3416|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	943968	rs13303313	C	T	29553.98	.	AC=489;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||359|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||4835|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||3409|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944007	.	G	C	148.61	.	AC=8;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>G|||||398|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>C|||||4796|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>G|||||3370|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944063	rs28386817	G	A	823.07	.	AC=30;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||454|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||4740|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||3314|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944180	.	C	T	85.69	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||571|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||4623|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||3197|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944204	rs116676018	G	A	1368.58	.	AC=37;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||595|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||4599|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||3173|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944232	.	C	T	194.64	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||623|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||4571|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||3145|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944564	rs3128117	T	C	29256.66	.	AC=393;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||955|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||4239|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||2813|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944657	.	C	T	48.32	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||1048|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||4146|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||2720|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944836	.	C	T	16.88	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||1227|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3967|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||2541|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944843	.	C	G	87.32	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>C|||||1234|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>G|||||3960|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>C|||||2534|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944850	.	A	T	561.62	.	AC=22;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>A|||||1241|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>T|||||3953|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>A|||||2527|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944857	.	C	T	340.41	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||1248|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3946|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||2520|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944878	.	G	C	20.16	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>G|||||1269|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>C|||||3925|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>G|||||2499|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944888	.	C	G	29.58	.	AC=2;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>C|||||1279|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>G|||||3915|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>C|||||2489|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944934	rs71576586	G	A	208.73	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||1325|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||3869|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||2443|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944950	.	G	A	354.83	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||1341|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||3853|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||2427|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944956	.	G	A	925.79	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||1347|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||3847|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||2421|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	944982	.	G	A	187.46	.	AC=8;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||1373|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||3821|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||2395|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945018	.	A	G	86.57	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>C|||||1409|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>G|||||3785|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>C|||||2359|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945093	.	A	G	175.18	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>C|||||1484|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>G|||||3710|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>C|||||2284|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945096	rs3135457	C	T	49856.29	.	AC=943;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||1487|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3707|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||2281|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945111	rs13303172	C	T	57996.02	.	AC=990;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||1502|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3692|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||2266|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945152	.	T	C	76.46	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||1543|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||3651|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||2225|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945167	.	G	A	790.73	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||1558|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||3636|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||2210|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945234	.	A	G	109.49	.	AC=10;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>C|||||1625|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>G|||||3569|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>C|||||2143|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945257	.	C	T	63.53	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||1648|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3546|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||2120|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945340	.	T	G	157.8	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>C|||||1731|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>G|||||3463|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>C|||||2037|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945349	rs114176189	G	A	708.69	.	AC=29;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||1740|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||3454|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||2028|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945474	rs3121566	C	T	54234.11	.	AC=919;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||1865|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3329|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||1903|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945478	.	G	A	142.36	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||1869|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||3325|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||1899|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945612	rs3121565	C	T	30678.93	.	AC=719;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||2003|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3191|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||1765|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945685	.	C	T	209.09	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||2076|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3118|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||1692|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945794	.	C	T	188.04	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||2185|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||3009|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||1583|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945826	.	G	C	6.23	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>G|||||2217|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>C|||||2977|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>G|||||1551|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945828	.	T	G	142.45	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>C|||||2219|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>G|||||2975|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>C|||||1549|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945837	.	A	T	372.42	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>A|||||2228|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>T|||||2966|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>A|||||1540|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945911	rs74045077	T	C	2890.81	.	AC=48;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||2302|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||2892|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||1466|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945944	rs74045078	T	C	2277.92	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||2335|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||2859|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||1433|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	945949	.	T	C	22.04	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||2340|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||2854|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||1428|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946134	rs2341364	T	G	1400.69	.	AC=117;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>C|||||2525|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>G|||||2669|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>C|||||1243|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946135	rs9723307	T	G	105.56	.	AC=24;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>C|||||2526|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>G|||||2668|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>C|||||1242|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946162	.	C	G	339.74	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>C|||||2553|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>G|||||2641|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>C|||||1215|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946196	.	C	T	1335.07	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||2587|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||2607|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||1181|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946418	.	G	A	211.7	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||2809|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||2385|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||959|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946582	.	G	A	134.55	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||2973|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||2221|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||795|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946613	.	G	A	22.75	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||3004|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||2190|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||764|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946780	.	C	G	149.74	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>C|||||3171|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>G|||||2023|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>C|||||597|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946858	.	C	T	33.48	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||3249|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1945|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||519|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946863	rs115945964	A	C	168.05	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>G|||||3254|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>C|||||1940|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471T>G|||||514|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946988	rs116274049	C	T	936.31	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||3379|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1815|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||389|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	946999	rs74045079	G	A	1207.19	.	AC=38;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||3390|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||1804|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||378|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	947034	rs2465126	G	A	50946.0	.	AC=924;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||3425|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||1769|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||343|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	947061	.	T	C	33.59	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||3452|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||1742|,C|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>G|||||316|,C|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	947091	.	C	T	101.58	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||3482|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1712|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||286|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	947117	.	C	T	60.51	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||3508|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1686|,T|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471G>A|||||260|,T|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	947292	.	T	G	59.15	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>C|||||3683|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>G|||||1511|,G|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471A>C|||||85|,G|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	947293	.	G	A	82.67	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||3684|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||1510|,A|downstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.*471C>T|||||84|,A|intergenic_region|MODIFIER|RP11-54O7.10-RP11-54O7.11|ENSG00000231702-ENSG00000224969|intergenic_region|ENSG00000231702-ENSG00000224969|||||||||
1	947402	.	G	C	13.33	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>G|||||3793|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>C|||||1401|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|2/2|n.446C>G||||||
1	947538	rs2465125	C	T	51218.5	.	AC=905;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||3929|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1265|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|2/2|n.310G>A||||||
1	947562	.	C	T	28.43	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||3953|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1241|,T|non_coding_exon_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|2/2|n.286G>A||||||
1	947563	rs60928912	G	A	1078.18	.	AC=25;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||3954|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||1240|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|2/2|n.285C>T||||||
1	947607	.	C	T	35.02	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||3998|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1196|,T|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-37G>A||||||
1	947699	.	G	A	49.31	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||4090|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||1104|,A|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-129C>T||||||
1	947703	rs55672842	G	A	579.51	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||4094|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||1100|,A|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-133C>T||||||
1	947777	.	C	T	5.71	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>A|||||4168|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||1026|,T|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-207G>A||||||
1	947778	rs9697358	A	G	1162.09	.	AC=41;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>C|||||4169|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>G|||||1025|,G|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-208T>C||||||
1	947809	rs115074115	G	C	1063.62	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>G|||||4200|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>C|||||994|,C|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-239C>G||||||
1	947838	.	A	G	113.55	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1T>C|||||4229|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152A>G|||||965|,G|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-268T>C||||||
1	947865	.	G	T	577.65	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>A|||||4256|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>T|||||938|,T|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.278-295C>A||||||
1	947969	.	C	G	152.94	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1G>C|||||4360|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>G|||||834|,G|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.277+328G>C||||||
1	948018	.	T	C	102.78	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||4409|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||785|,C|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.277+279A>G||||||
1	948100	.	T	G	206.41	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>C|||||4491|,G|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>G|||||703|,G|intron_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/1|n.277+197A>C||||||
1	948345	.	G	A	37.8	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||4736|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||458|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/2|n.229C>T||||||
1	948475	.	G	A	228.54	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1C>T|||||4866|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||328|,A|non_coding_exon_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/2|n.99C>T||||||
1	948477	rs116046129	T	C	1135.28	.	AC=20;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||4868|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||326|,C|non_coding_exon_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense|1/2|n.97A>G||||||
1	948579	rs74045080	T	C	957.41	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.10|ENSG00000231702|transcript|ENST00000423619|processed_pseudogene||n.-1A>G|||||4970|,C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||6|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||224|,C|intergenic_region|MODIFIER|RP11-54O7.11-ISG15|ENSG00000224969-ENSG00000187608|intergenic_region|ENSG00000224969-ENSG00000187608|||||||||
1	948627	rs112029659	C	T	174.67	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||54|,T|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152C>T|||||176|,T|intergenic_region|MODIFIER|RP11-54O7.11-ISG15|ENSG00000224969-ENSG00000187608|intergenic_region|ENSG00000224969-ENSG00000187608|||||||||
1	948692	rs2341365	G	A	36930.26	.	AC=820;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||119|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||111|,A|intergenic_region|MODIFIER|RP11-54O7.11-ISG15|ENSG00000224969-ENSG00000187608|intergenic_region|ENSG00000224969-ENSG00000187608|||||||||
1	948699	.	T	C	42.05	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||126|,C|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>C|||||104|,C|intergenic_region|MODIFIER|RP11-54O7.11-ISG15|ENSG00000224969-ENSG00000187608|intergenic_region|ENSG00000224969-ENSG00000187608|||||||||
1	948716	.	T	A	24.5	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>T|||||143|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152T>A|||||87|,A|intergenic_region|MODIFIER|RP11-54O7.11-ISG15|ENSG00000224969-ENSG00000187608|intergenic_region|ENSG00000224969-ENSG00000187608|||||||||
1	948776	.	G	A	13.03	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||203|,A|upstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.-152G>A|||||27|,A|intergenic_region|MODIFIER|RP11-54O7.11-ISG15|ENSG00000224969-ENSG00000187608|intergenic_region|ENSG00000224969-ENSG00000187608|||||||||
1	948811	.	C	T	14.36	.	AC=2;ANN=T|5_prime_UTR_premature_start_codon_gain_variant|LOW|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/2|c.-143C>T||||||,T|5_prime_UTR_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/2|c.-143C>T|||||143|,T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||238|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:948786_948935|||||||||
1	948869	.	C	T	179.63	.	AC=13;ANN=T|5_prime_UTR_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/2|c.-85C>T|||||85|,T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||296|,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:948786_948935|||||||||
1	948870	rs4615788	C	G	26150.86	.	AC=720;ANN=G|5_prime_UTR_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/2|c.-84C>G|||||84|,G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>C|||||297|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:948786_948935|||||||||
1	948921	rs15842	T	C	32606.11	.	AC=784;ANN=C|5_prime_UTR_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/2|c.-33T>C|||||33|,C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||348|,C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:948786_948935|||||||||
1	949053	rs28491407	C	G	1336.03	.	AC=41;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>C|||||480|,G|intron_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/1|c.3+97C>G||||||
1	949123	.	G	A	454.7	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||550|,A|intron_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/1|c.3+167G>A||||||
1	949164	.	C	T	11.57	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||591|,T|intron_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/1|c.4-200C>T||||||
1	949165	.	G	A	8.07	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||592|,A|intron_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/1|c.4-199G>A||||||
1	949235	rs2465124	G	A	45531.02	.	AC=842;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||662|,A|intron_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/1|c.4-129G>A||||||
1	949237	rs3748598	G	A	518.85	.	AC=21;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||664|,A|intron_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/1|c.4-127G>A||||||
1	949325	.	G	T	26.38	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>A|||||752|,T|intron_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|1/1|c.4-39G>T||||||
1	949422	.	G	A	272.72	.	AC=10;ANN=A|missense_variant|MODERATE|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.62G>A|p.Ser21Asn|213/711|62/498|21/165||,A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||849|
1	949579	.	G	T	358.53	.	AC=5;ANN=T|synonymous_variant|LOW|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.219G>T|p.Leu73Leu|370/711|219/498|73/165||,T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>A|||||1006|
1	949597	rs61766284	C	T	241.91	.	AC=14;ANN=T|synonymous_variant|LOW|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.237C>T|p.Asp79Asp|388/711|237/498|79/165||,T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||1024|
1	949608	rs1921	G	A	20382.9	.	AC=347;ANN=A|missense_variant|MODERATE|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.248G>A|p.Ser83Asn|399/711|248/498|83/165||,A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||1035|
1	949654	rs8997	A	G	45780.9	.	AC=818;ANN=G|synonymous_variant|LOW|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.294A>G|p.Val98Val|445/711|294/498|98/165||,G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>C|||||1081|
1	949831	rs116002608	C	T	286.7	.	AC=19;ANN=T|synonymous_variant|LOW|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.471C>T|p.Gly157Gly|622/711|471/498|157/165||,T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||1258|
1	949846	.	C	T	97.03	.	AC=1;ANN=T|synonymous_variant|LOW|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.486C>T|p.Gly162Gly|637/711|486/498|162/165||,T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||1273|
1	949851	.	G	C	36.13	.	AC=3;ANN=C|missense_variant|MODERATE|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.491G>C|p.Arg164Pro|642/711|491/498|164/165||,C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>G|||||1278|
1	949886	.	C	A	34.83	.	AC=3;ANN=A|3_prime_UTR_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.*28C>A|||||28|,A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>T|||||1313|
1	949889	rs3829742	G	A	313.11	.	AC=13;ANN=A|3_prime_UTR_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding|2/2|c.*31G>A|||||31|,A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||1316|
1	949925	rs2799070	C	T	45781.34	.	AC=886;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||1352|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||5|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	949942	.	T	A	43.46	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>T|||||1369|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>A|||||22|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	949961	.	C	T	13.75	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||1388|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||41|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950192	.	C	T	336.97	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||1619|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||272|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950243	rs1891906	A	C	10209.14	.	AC=273;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>G|||||1670|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>C|||||323|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950357	rs116559788	A	G,T	282.99	.	AC=14;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>C|||||1784|,T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>A|||||1784|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>G|||||437|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>T|||||437|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950459	rs115862362	G	T	39.4	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>A|||||1886|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>T|||||539|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950508	rs28446115	G	A	582.93	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||1935|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4995|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||588|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950512	.	G	A	39.53	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||1939|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4991|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||592|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950599	.	G	C	176.15	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>G|||||2026|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>C|||||4904|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>C|||||679|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950677	rs9331223	T	C	27001.31	.	AC=554;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||2104|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||4826|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||757|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950716	rs2799069	A	T	47261.24	.	AC=920;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>A|||||2143|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>T|||||4787|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>T|||||796|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950728	rs116128427	G	A	582.61	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||2155|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4775|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||808|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	950976	.	C	T	126.09	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||2403|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||4527|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||1056|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951027	.	C	T	26.27	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||2454|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||4476|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||1107|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951142	.	A	C	53.63	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>G|||||2569|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>C|||||4361|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>C|||||1222|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951178	.	G	A	30.7	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||2605|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4325|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||1258|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951279	.	C	A	75.05	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>T|||||2706|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>A|||||4224|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>A|||||1359|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951280	.	A	T	54.96	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>A|||||2707|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>T|||||4223|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>T|||||1360|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951283	rs9442363	C	T	1454.13	.	AC=90;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||2710|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||4220|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||1363|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951295	rs9442388	C	T	510.51	.	AC=37;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||2722|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||4208|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||1375|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951317	.	A	G	40.5	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>C|||||2744|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>G|||||4186|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>G|||||1397|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951322	rs9697362	C	T	531.33	.	AC=39;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||2749|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||4181|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||1402|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951330	rs9697717	G	A	1750.6	.	AC=105;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||2757|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4173|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||1410|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951401	.	A	G	46.05	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>C|||||2828|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>G|||||4102|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>G|||||1481|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951431	.	G	A	26.02	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||2858|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4072|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||1511|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951488	.	G	A	14.49	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||2915|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4015|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||1568|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951500	.	G	A	291.0	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||2927|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||4003|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||1580|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951538	.	A	T	8.54	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>A|||||2965|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>T|||||3965|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>T|||||1618|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951546	.	C	G	2742.41	.	AC=53;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>C|||||2973|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>G|||||3957|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>G|||||1626|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951564	rs2465141	A	G	13435.94	.	AC=318;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>C|||||2991|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>G|||||3939|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>G|||||1644|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951570	.	T	C	67.48	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||2997|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||3933|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||1650|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951613	.	T	G	7.29	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>C|||||3040|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>G|||||3890|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>G|||||1693|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951616	.	T	G	1751.47	.	AC=84;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>C|||||3043|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>G|||||3887|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>G|||||1696|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951623	.	A	C	1078.71	.	AC=41;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>G|||||3050|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>C|||||3880|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>C|||||1703|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951635	.	G	C	1065.85	.	AC=72;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>G|||||3062|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>C|||||3868|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>C|||||1715|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951655	.	C	A	522.22	.	AC=48;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>T|||||3082|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>A|||||3848|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>A|||||1735|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951730	rs114475700	C	T	869.82	.	AC=21;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||3157|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||3773|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||1810|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951737	.	G	A	143.42	.	AC=10;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||3164|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||3766|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||1817|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951743	.	A	T	735.71	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>A|||||3170|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>T|||||3760|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>T|||||1823|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951828	.	C	T	58.68	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||3255|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||3675|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||1908|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	951899	.	A	T	64.36	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>A|||||3326|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>T|||||3604|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>T|||||1979|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952003	rs3128118	G	A	19020.8	.	AC=352;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||3430|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||3500|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||2083|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952073	.	G	C	50.76	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>G|||||3500|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>C|||||3430|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>C|||||2153|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952135	rs28810436	T	C	419.29	.	AC=9;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||3562|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||3368|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||2215|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952345	rs114885312	C	T	1480.15	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||3772|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||3158|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||2425|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952347	.	T	C	89.02	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||3774|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||3156|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||2427|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952428	rs9442611	G	A	22881.54	.	AC=471;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||3855|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||3075|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||2508|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952429	.	C	T	72.84	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||3856|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||3074|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||2509|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952497	.	T	A	52.73	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>T|||||3924|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>A|||||3006|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>A|||||2577|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952538	.	G	A	294.79	.	AC=7;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||3965|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||2965|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||2618|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952562	.	T	C	435.54	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||3989|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||2941|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||2642|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952604	.	G	C	23.77	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>G|||||4031|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>C|||||2899|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>C|||||2684|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952636	rs115530285	C	T	12.67	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||4063|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||2867|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||2716|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952642	.	G	A	301.93	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||4069|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||2861|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||2722|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952678	.	C	T	91.47	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||4105|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||2825|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||2758|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952704	.	G	A	305.92	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||4131|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||2799|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||2784|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952746	.	C	T	392.61	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||4173|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||2757|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||2826|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952813	.	C	G	88.84	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>C|||||4240|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>G|||||2690|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>G|||||2893|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952846	.	G	A	37.03	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||4273|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||2657|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||2926|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952936	.	T	C	16.9	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||4363|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||2567|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||3016|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952956	.	C	T	109.89	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||4383|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||2547|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||3036|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	952963	.	C	T	14.0	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||4390|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||2540|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||3043|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953036	.	T	G	9.63	.	AC=6;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>C|||||4463|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>G|||||2467|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>G|||||3116|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953077	.	A	G	658.75	.	AC=17;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>C|||||4504|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>G|||||2426|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>G|||||3157|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953107	.	G	C	31.7	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>G|||||4534|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>C|||||2396|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>C|||||3187|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953158	.	G	T	43.6	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>A|||||4585|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>T|||||2345|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>T|||||3238|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953224	.	C	T	19685.06	.	AC=586;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||4651|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||2279|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||3304|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953309	.	C	T	27.57	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1G>A|||||4736|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||2194|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||3389|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953317	.	T	C	107.69	.	AC=21;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||4744|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||2186|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||3397|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953319	.	T	C	192.48	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||4746|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||2184|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||3399|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953354	.	G	A	14442.22	.	AC=264;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1C>T|||||4781|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||2149|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||3434|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953390	.	T	C	62.31	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1A>G|||||4817|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||2113|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||3470|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953553	.	A	G	219.82	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.11|ENSG00000224969|transcript|ENST00000458555|antisense||n.-1T>C|||||4980|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>G|||||1950|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>G|||||3633|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953602	.	C	G	157.13	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>G|||||1901|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>G|||||3682|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953642	.	C	T	16.48	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||1861|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||3722|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953678	.	T	C	22530.56	.	AC=547;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||1825|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||3758|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953702	rs115432780	G	A	446.83	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||1801|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||3782|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953732	.	T	C	289.02	.	AC=13;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||1771|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||3812|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953745	.	A	G	163.77	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>G|||||1758|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649A>G|||||3825|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953769	.	C	T	8.66	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||1734|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||3849|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953783	.	C	T	304.89	.	AC=18;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>T|||||1720|,T|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>T|||||3863|,T|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953815	.	T	A	155.02	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>A|||||1688|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>A|||||3895|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953908	.	C	G	99.87	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>G|||||1595|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>G|||||3988|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	953952	rs9442612	G	A	10971.65	.	AC=351;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||1551|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||4032|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954032	.	C	G	5422.6	.	AC=171;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>G|||||1471|,G|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>G|||||4112|,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954066	.	T	C	98.47	.	AC=10;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||1437|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||4146|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954134	rs3109210	G	A	7109.38	.	AC=212;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||1369|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||4214|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954149	.	C	A	208.32	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>A|||||1354|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>A|||||4229|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954200	.	G	C	33.0	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>C|||||1303|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>C|||||4280|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954284	.	G	A	222.61	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||1219|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||4364|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954489	.	G	A	76.33	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||1014|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||4569|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954622	rs113773920	G	A	70.62	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51G>A|||||881|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649G>A|||||4702|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954713	.	T	C	5.95	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||790|,C|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649T>C|||||4793|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	954777	rs61766299	C	A	5195.17	.	AC=191;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51C>A|||||726|,A|downstream_gene_variant|MODIFIER|ISG15|ENSG00000187608|transcript|ENST00000379389|protein_coding||c.*649C>A|||||4857|,A|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	955016	rs34927559	A	G	2071.94	.	AC=101;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51A>G|||||487|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:954946_955095|||||||||,G|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	955213	rs78276138	T	C	880.26	.	AC=50;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding||c.-51T>C|||||290|,C|intergenic_region|MODIFIER|ISG15-AGRN|ENSG00000187608-ENSG00000188157|intergenic_region|ENSG00000187608-ENSG00000188157|||||||||
1	955597	rs115173026	G	T	2507.67	.	AC=114;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/36|c.45G>T|p.Pro15Pro|95/7323|45/6138|15/2045||,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:955586_955735|||||||||
1	956077	rs116130865	C	T	895.64	.	AC=61;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+324C>T||||||
1	956245	.	G	A	57.98	.	AC=2;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:956186_956335|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+492G>A||||||
1	956327	rs111893801	C	T	477.39	.	AC=26;ANN=T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:956186_956335|||||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+574C>T||||||
1	956467	.	A	G	86.65	.	AC=3;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+714A>G||||||
1	956493	rs74045083	G	C	391.59	.	AC=15;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+740G>C||||||
1	956497	.	T	A	78.63	.	AC=3;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+744T>A||||||
1	956501	.	C	G	73.9	.	AC=2;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+748C>G||||||
1	956525	.	G	A	53.34	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+772G>A||||||
1	956553	.	G	A	9.65	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+800G>A||||||
1	956593	.	C	G	23.44	.	AC=6;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+840C>G||||||
1	956622	.	C	T	43.0	.	AC=6;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.201+869C>T||||||
1	956676	rs114727567	G	A	120.88	.	AC=8;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:956646_956795|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-905G>A||||||
1	956697	.	C	A	30.9	.	AC=1;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:956646_956795|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-884C>A||||||
1	956781	.	G	A	50.71	.	AC=3;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:956646_956795|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-800G>A||||||
1	956812	.	C	G	15.44	.	AC=2;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-769C>G||||||
1	956852	rs9777931	C	T	16706.69	.	AC=405;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-729C>T||||||
1	956860	.	C	G	7.1	.	AC=1;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-721C>G||||||
1	956965	rs115514722	G	A	214.37	.	AC=12;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-616G>A||||||
1	956972	rs28555183	C	T	193.48	.	AC=10;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-609C>T||||||
1	956998	.	C	T	105.16	.	AC=8;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-583C>T||||||
1	957040	rs114362721	G	A	52.3	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-541G>A||||||
1	957105	.	A	G	153.45	.	AC=15;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-476A>G||||||
1	957115	.	A	C	92.19	.	AC=2;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-466A>C||||||
1	957120	rs3121553	G	C	7840.55	.	AC=230;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-461G>C||||||
1	957171	rs115025567	A	G	180.65	.	AC=9;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-410A>G||||||
1	957173	rs74045085	C	T	367.36	.	AC=17;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-408C>T||||||
1	957255	rs116468960	C	T	348.85	.	AC=17;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-326C>T||||||
1	957568	rs115704555	A	G	440.47	.	AC=22;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|1/35|c.202-13A>G||||||
1	957640	rs6657048	C	T	935.46	.	AC=39;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/36|c.261C>T|p.Asp87Asp|311/7323|261/6138|87/2045||
1	957664	.	C	T	9.73	.	AC=1;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/36|c.285C>T|p.Ser95Ser|335/7323|285/6138|95/2045||
1	957898	rs2799064	G	T	11663.39	.	AC=260;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+56G>T||||||
1	957971	rs61766301	G	A	66.21	.	AC=7;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+129G>A||||||
1	957997	.	G	A	27.64	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+155G>A||||||
1	958017	rs6670874	A	G	350.98	.	AC=17;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+175A>G||||||
1	958204	.	C	A	332.34	.	AC=9;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+362C>A||||||
1	958208	.	C	T	44.16	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+366C>T||||||
1	958222	.	C	T	62.89	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+380C>T||||||
1	958230	.	G	A	82.85	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+388G>A||||||
1	958236	rs113847517	T	C	225.46	.	AC=11;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+394T>C||||||
1	958248	rs2001744	A	G	12248.62	.	AC=266;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+406A>G||||||
1	958492	rs9442613	C	T	85.78	.	AC=3;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+650C>T||||||
1	958601	.	C	T	75.55	.	AC=5;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+759C>T||||||
1	958684	.	C	G	160.34	.	AC=10;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+842C>G||||||
1	958731	rs2341363	A	G	17338.52	.	AC=332;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+889A>G||||||
1	958833	rs116244733	G	A	109.71	.	AC=3;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+991G>A||||||
1	958905	rs2710890	A	G	16325.11	.	AC=319;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1063A>G||||||
1	958931	.	C	T	52.32	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1089C>T||||||
1	958953	rs2710889	A	G	15334.13	.	AC=313;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1111A>G||||||
1	959026	rs4452985	G	A	451.22	.	AC=20;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1184G>A||||||
1	959093	.	C	T	93.77	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1251C>T||||||
1	959155	rs3845291	G	A	26610.37	.	AC=499;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:959126_959275|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1313G>A||||||
1	959169	rs3845292	G	C	22525.16	.	AC=531;ANN=C|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:959126_959275|||||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1327G>C||||||
1	959193	.	G	A	36.12	.	AC=1;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:959126_959275|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1351G>A||||||
1	959231	rs4039721	G	A	19512.23	.	AC=399;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:959126_959275|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1389G>A||||||
1	959289	.	G	C	46.77	.	AC=6;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1447G>C||||||
1	959509	rs28591569	T	G	2460.41	.	AC=79;ANN=G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:959446_959595|||||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1667T>G||||||
1	959584	.	G	A	101.46	.	AC=1;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:959446_959595|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1742G>A||||||
1	959791	.	G	A	59.51	.	AC=3;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+1949G>A||||||
1	959842	rs2710888	C	T	17262.78	.	AC=315;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2000C>T||||||
1	959923	.	C	T	248.9	.	AC=8;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2081C>T||||||
1	959989	.	G	A	119.81	.	AC=8;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2147G>A||||||
1	960016	.	G	A	20.85	.	AC=3;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2174G>A||||||
1	960282	rs114268650	C	T	144.6	.	AC=3;ANN=T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:960146_960295|||||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2440C>T||||||
1	960409	rs4970392	G	C	15374.14	.	AC=396;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2567G>C||||||
1	960522	.	C	T	13.42	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2680C>T||||||
1	960616	.	G	A	48.24	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2774G>A||||||
1	960681	.	G	A	276.27	.	AC=13;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2839G>A||||||
1	960780	.	G	A	52.14	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+2938G>A||||||
1	960941	rs3121554	G	C	5078.08	.	AC=154;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3099G>C||||||
1	960966	rs58473092	C	T	27.58	.	AC=5;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3124C>T||||||
1	961047	rs3128124	A	T	81.62	.	AC=5;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3205A>T||||||
1	961105	.	C	T	153.06	.	AC=6;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3263C>T||||||
1	961294	.	G	A	14.37	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3452G>A||||||
1	961350	rs3121555	C	T	10105.36	.	AC=272;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3508C>T||||||
1	961366	.	G	T	252.55	.	AC=17;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3524G>T||||||
1	961367	rs113220637	G	A,C	269.15	.	AC=17;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3525G>A||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3525G>C||||||
1	961368	.	G	T	42.36	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3526G>T||||||
1	961372	rs114663692	G	A	576.74	.	AC=24;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3530G>A||||||
1	961456	.	T	C	8.46	.	AC=3;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3614T>C||||||
1	961464	rs3128125	G	T	13559.77	.	AC=286;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3622G>T||||||
1	961510	.	A	G	79.26	.	AC=1;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3668A>G||||||
1	961545	.	C	G	118.41	.	AC=2;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3703C>G||||||
1	961599	rs78583450	C	T	1281.82	.	AC=43;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3757C>T||||||
1	961605	rs112555755	C	T	1777.62	.	AC=53;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3763C>T||||||
1	961606	.	G	A	16.19	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3764G>A||||||
1	961773	.	C	A,T	16.33	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3931C>A||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3931C>T||||||
1	961827	rs3121556	G	A	37155.15	.	AC=737;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+3985G>A||||||
1	961905	.	G	A	30.28	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4063G>A||||||
1	961967	rs115015897	G	A	107.43	.	AC=8;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4125G>A||||||
1	961986	rs111412577	G	A	1481.4	.	AC=52;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4144G>A||||||
1	962083	.	C	T	88.37	.	AC=2;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4241C>T||||||
1	962209	.	C	A	178.78	.	AC=3;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4367C>A||||||
1	962210	rs3128126	A	G	16801.93	.	AC=346;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4368A>G||||||
1	962213	.	G	A	194.9	.	AC=4;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4371G>A||||||
1	962219	rs111935842	C	T	208.64	.	AC=4;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4377C>T||||||
1	962231	rs74326382	G	T	8.23	.	AC=2;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4389G>T||||||
1	962367	.	T	G	110.08	.	AC=4;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4525T>G||||||
1	962401	rs116521456	G	A	367.35	.	AC=15;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4559G>A||||||
1	962526	rs115263399	C	G	319.24	.	AC=17;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4684C>G||||||
1	962605	.	C	T	68.2	.	AC=5;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4763C>T||||||
1	962606	rs4970393	G	A	28394.26	.	AC=541;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4764G>A||||||
1	962720	rs28670633	C	T	7405.27	.	AC=118;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4878C>T||||||
1	962757	rs114948506	G	A	542.57	.	AC=19;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4915G>A||||||
1	962816	.	C	T	61.6	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4974C>T||||||
1	962830	.	T	G	1018.12	.	AC=12;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4988T>G||||||
1	962841	.	C	T	228.33	.	AC=3;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+4999C>T||||||
1	962878	rs72898502	C	T	32.28	.	AC=2;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5036C>T||||||
1	962891	rs4970394	C	T	34296.26	.	AC=561;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5049C>T||||||
1	962940	.	G	C	399.66	.	AC=19;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5098G>C||||||
1	962946	rs4970395	C	T	288.27	.	AC=6;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5104C>T||||||
1	963013	rs9442389	C	T	32788.08	.	AC=541;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5171C>T||||||
1	963021	.	C	T	4.11	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5179C>T||||||
1	963181	.	G	C	44.2	.	AC=2;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5339G>C||||||
1	963249	rs2710870	C	T	31377.14	.	AC=679;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5407C>T||||||
1	963338	rs72900404	G	A	479.28	.	AC=29;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5496G>A||||||
1	963339	.	G	T	18.21	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5497G>T||||||
1	963576	.	C	T	151.14	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5734C>T||||||
1	963661	rs13303147	C	T	575.85	.	AC=24;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5819C>T||||||
1	963721	rs2465127	T	C	5638.5	.	AC=265;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5879T>C||||||
1	963735	.	G	A	11.02	.	AC=5;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5893G>A||||||
1	963801	rs116856357	G	A	40.77	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5959G>A||||||
1	963814	rs114899427	G	A	1920.34	.	AC=75;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+5972G>A||||||
1	963871	rs4431783	C	G	1004.86	.	AC=59;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6029C>G||||||
1	963912	rs4255327	A	G	17.04	.	AC=8;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6070A>G||||||
1	963945	rs113632379	T	C	702.96	.	AC=47;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6103T>C||||||
1	964128	rs4246501	C	T	424.36	.	AC=23;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6286C>T||||||
1	964132	rs58325351	G	C	29.1	.	AC=5;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6290G>C||||||
1	964176	rs13303045	C	G	84.07	.	AC=8;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6334C>G||||||
1	964230	rs28637280	G	A	342.34	.	AC=22;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6388G>A||||||
1	964237	.	G	C	250.09	.	AC=20;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.463+6395G>C||||||
1	964291	rs111618260	G	A	105.93	.	AC=8;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6366G>A||||||
1	964298	rs4970396	C	G	6791.93	.	AC=250;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6359C>G||||||
1	964302	.	C	T	119.46	.	AC=14;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6355C>T||||||
1	964339	rs111521425	G	A	14.57	.	AC=6;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6318G>A||||||
1	964359	.	G	C	81.33	.	AC=12;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6298G>C||||||
1	964389	rs4970397	C	T	5758.06	.	AC=224;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6268C>T||||||
1	964420	.	C	G	448.79	.	AC=34;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6237C>G||||||
1	964450	rs113218069	C	T	128.56	.	AC=13;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6207C>T||||||
1	964474	.	G	A	77.96	.	AC=6;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6183G>A||||||
1	964481	.	G	C	217.48	.	AC=19;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6176G>C||||||
1	964563	.	C	A	46.13	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>A|||||4923|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6094C>A||||||
1	964608	.	C	A	32.46	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>A|||||4878|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-6049C>A||||||
1	964671	rs74045087	C	T	172.04	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||4815|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5986C>T||||||
1	964797	rs114097352	C	T	384.68	.	AC=23;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||4689|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5860C>T||||||
1	964840	rs4970343	T	C	28432.69	.	AC=668;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||4646|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5817T>C||||||
1	964848	rs4970344	A	T	36942.72	.	AC=731;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>T|||||4638|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5809A>T||||||
1	964938	.	G	T	10.37	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>T|||||4548|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5719G>T||||||
1	964945	.	A	T	85.74	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>T|||||4541|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5712A>T||||||
1	965009	rs71576588	A	G	15501.89	.	AC=359;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||4477|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5648A>G||||||
1	965029	.	T	C	65.19	.	AC=7;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||4457|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5628T>C||||||
1	965104	.	T	C	280.6	.	AC=25;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||4382|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5553T>C||||||
1	965126	.	G	A	339.35	.	AC=26;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||4360|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5531G>A||||||
1	965175	rs28373660	A	G	66771.82	.	AC=682;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||4311|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5482A>G||||||
1	965205	.	G	A	278.94	.	AC=28;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||4281|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5452G>A||||||
1	965221	.	T	C	312.39	.	AC=31;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||4265|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5436T>C||||||
1	965243	.	A	G	999.66	.	AC=84;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||4243|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5414A>G||||||
1	965278	rs28433148	T	C	39328.82	.	AC=610;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||4208|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4969|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5379T>C||||||
1	965295	.	T	C	358.87	.	AC=5;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||4191|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4952|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5362T>C||||||
1	965337	.	C	T	823.91	.	AC=65;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||4149|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||4910|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5320C>T||||||
1	965403	rs4970346	A	G	8512.4	.	AC=145;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||4083|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||4844|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5254A>G||||||
1	965441	.	A	G	11897.36	.	AC=178;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||4045|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||4806|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5216A>G||||||
1	965462	rs116558934	C	A	23981.46	.	AC=286;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>A|||||4024|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>A|||||4785|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5195C>A||||||
1	965501	.	T	C	20824.66	.	AC=269;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||3985|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4746|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5156T>C||||||
1	965504	.	A	C	369.19	.	AC=16;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>C|||||3982|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>C|||||4743|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5153A>C||||||
1	965523	rs4970404	A	G	35127.6	.	AC=340;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||3963|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||4724|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5134A>G||||||
1	965567	.	A	G	1624.48	.	AC=97;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||3919|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||4680|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5090A>G||||||
1	965581	.	T	C	164.41	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||3905|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4666|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5076T>C||||||
1	965604	.	C	T	41467.31	.	AC=580;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||3882|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||4643|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-5053C>T||||||
1	965817	.	C	T	230.7	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||3669|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||4430|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4840C>T||||||
1	965876	.	C	T	6135.55	.	AC=79;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||3610|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||4371|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4781C>T||||||
1	965877	.	G	A	262.0	.	AC=17;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||3609|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||4370|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4780G>A||||||
1	965889	rs115973419	C	T	1363.29	.	AC=40;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||3597|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||4358|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4768C>T||||||
1	965939	rs115802310	A	T	89266.48	.	AC=805;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>T|||||3547|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>T|||||4308|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4718A>T||||||
1	965949	.	A	G	25784.67	.	AC=422;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||3537|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||4298|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4708A>G||||||
1	965963	.	T	C	340.96	.	AC=30;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||3523|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4284|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4694T>C||||||
1	966013	.	A	T	11.32	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>T|||||3473|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>T|||||4234|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4644A>T||||||
1	966043	.	T	C	187.07	.	AC=17;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||3443|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4204|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4614T>C||||||
1	966064	.	T	C	20305.43	.	AC=425;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||3422|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4183|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4593T>C||||||
1	966079	.	T	C	38821.3	.	AC=503;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||3407|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4168|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4578T>C||||||
1	966125	rs114675645	C	T	30105.78	.	AC=268;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||3361|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||4122|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4532C>T||||||
1	966126	.	G	A	622.41	.	AC=13;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||3360|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||4121|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4531G>A||||||
1	966147	rs115684539	A	G	29194.9	.	AC=311;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||3339|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||4100|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4510A>G||||||
1	966171	.	T	C	181.04	.	AC=32;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>C|||||3315|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>C|||||4076|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4486T>C||||||
1	966193	.	A	G	10639.27	.	AC=197;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||3293|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||4054|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4464A>G||||||
1	966307	rs13303157	G	A	11273.78	.	AC=238;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||3179|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||3940|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4350G>A||||||
1	966427	.	A	G	330.99	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||3059|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||3820|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4230A>G||||||
1	966435	.	T	A	453.92	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1T>A|||||3051|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1T>A|||||3812|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4222T>A||||||
1	966566	.	A	T	9.65	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>T|||||2920|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>T|||||3681|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-4091A>T||||||
1	966682	rs116134705	C	T	385.36	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||2804|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||3565|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3975C>T||||||
1	966706	.	G	C	235.47	.	AC=6;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>C|||||2780|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>C|||||3541|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3951G>C||||||
1	966712	.	G	T	41.8	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>T|||||2774|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>T|||||3535|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3945G>T||||||
1	966874	.	C	T	35.91	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||2612|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||3373|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3783C>T||||||
1	966983	.	G	A	101.3	.	AC=5;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||2503|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||3264|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3674G>A||||||
1	967000	rs76467416	C	T	211.48	.	AC=9;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||2486|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||3247|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3657C>T||||||
1	967007	.	C	T	38.8	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||2479|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||3240|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3650C>T||||||
1	967207	.	C	T	19.06	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||2279|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||3040|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3450C>T||||||
1	967590	rs114758950	C	T	250.91	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||1896|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||2657|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-3067C>T||||||
1	967658	rs4970349	C	T	35032.81	.	AC=574;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||1828|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||2589|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2999C>T||||||
1	967884	.	C	T	25.16	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>T|||||1602|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||2363|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2773C>T||||||
1	968156	.	G	A	156.83	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||1330|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||2091|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2501G>A||||||
1	968214	.	G	A	28.02	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||1272|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||2033|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2443G>A||||||
1	968226	rs3121560	C	A	10018.4	.	AC=242;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>A|||||1260|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>A|||||2021|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2431C>A||||||
1	968227	.	G	A	21.87	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||1259|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||2020|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2430G>A||||||
1	968251	rs13302943	A	G	30.29	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||1235|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||1996|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2406A>G||||||
1	968326	rs116556814	G	T	232.05	.	AC=13;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>T|||||1160|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>T|||||1921|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2331G>T||||||
1	968345	rs114490664	G	A	245.99	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||1141|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||1902|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2312G>A||||||
1	968513	rs114824431	A	G	118.1	.	AC=7;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1A>G|||||973|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1A>G|||||1734|,G|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:968466_968615|||||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-2144A>G||||||
1	968945	.	G	A	68.99	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1G>A|||||541|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||1302|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-1712G>A||||||
1	969212	.	C	A	39.78	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.-1C>A|||||274|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>A|||||1035|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-1445C>A||||||
1	969659	rs2710884	G	A	4574.3	.	AC=170;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||588|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-998G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/3|n.174G>A||||||
1	969670	.	C	G	26.83	.	AC=5;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>G|||||577|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-987C>G||||||,G|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/3|n.185C>G||||||
1	969699	.	C	A	9.37	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>A|||||548|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-958C>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/3|n.214C>A||||||
1	969773	rs115170833	C	T	228.71	.	AC=16;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1C>T|||||474|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-884C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/3|n.288C>T||||||
1	969816	.	G	A	27.45	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>A|||||431|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-841G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/3|n.331G>A||||||
1	970215	rs9442364	G	C	9465.66	.	AC=291;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.-1G>C|||||32|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-442G>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/2|n.598+132G>C||||||
1	970417	rs111329619	A	C	283.51	.	AC=17;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-240A>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/2|n.599-240A>C||||||,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/3|n.171A>C||||||
1	970455	rs116522930	G	A	429.91	.	AC=16;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|2/35|c.464-202G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|1/2|n.599-202G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/3|n.209G>A||||||
1	970676	.	C	T	36.68	.	AC=1;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/36|c.483C>T|p.Phe161Phe|533/7323|483/6138|161/2045||,T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:970606_970755|||||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/3|n.618C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/3|n.430C>T||||||
1	970788	rs116010269	G	A	1014.06	.	AC=36;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+84G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+84G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+84G>A||||||
1	970836	rs112116228	G	A	1695.16	.	AC=56;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+132G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+132G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+132G>A||||||
1	970865	.	C	T	13.77	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+161C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+161C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+161C>T||||||
1	970878	.	C	T	57.51	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+174C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+174C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+174C>T||||||
1	970915	rs115493882	C	T	878.33	.	AC=33;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+211C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+211C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+211C>T||||||
1	971059	.	C	T	150.58	.	AC=4;ANN=T|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:971046_971195|||||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+355C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+355C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+355C>T||||||
1	971120	.	G	A	68.54	.	AC=7;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:971046_971195|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+416G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+416G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+416G>A||||||
1	971184	rs113132882	G	A	2238.43	.	AC=63;ANN=A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:971046_971195|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+480G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+480G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+480G>A||||||
1	971224	rs2799055	A	G	26857.6	.	AC=665;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+520A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+520A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+520A>G||||||
1	971367	rs2710883	T	C	43807.67	.	AC=834;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+663T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+663T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+663T>C||||||
1	971398	.	G	A	116.98	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+694G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+694G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+694G>A||||||
1	971468	.	C	T	124.14	.	AC=2;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+764C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+764C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+764C>T||||||
1	971472	.	C	G,T	134.07	.	AC=7;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+768C>G||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+768C>T||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+768C>G||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+768C>T||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+768C>G||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+768C>T||||||
1	971569	.	G	T	9.96	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+865G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+865G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+865G>T||||||
1	971579	.	C	T	34.81	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+875C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+875C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+875C>T||||||
1	971587	.	T	C	83.22	.	AC=1;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+883T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+883T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+883T>C||||||
1	971622	rs116208147	C	G	550.49	.	AC=8;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+918C>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+918C>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+918C>G||||||
1	971687	rs116375407	G	A	833.86	.	AC=23;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+983G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+983G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+983G>A||||||
1	971783	.	C	T	47.99	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1079C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1079C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1079C>T||||||
1	971815	.	C	A	13.44	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1111C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1111C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1111C>A||||||
1	971833	.	G	A	6.96	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1129G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1129G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1129G>A||||||
1	971860	.	C	T	31.54	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1156C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1156C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1156C>T||||||
1	971935	.	G	A	188.28	.	AC=5;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1231G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1231G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1231G>A||||||
1	971965	rs116627277	T	C	271.27	.	AC=17;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1261T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1261T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1261T>C||||||
1	971991	rs113338160	C	T	158.15	.	AC=11;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1287C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1287C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1287C>T||||||
1	972022	.	G	T	12.28	.	AC=2;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1318G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1318G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1318G>T||||||
1	972134	rs3121575	C	T	38600.49	.	AC=822;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1430C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1430C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1430C>T||||||
1	972180	rs4970350	G	A	30298.03	.	AC=564;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1476G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1476G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1476G>A||||||
1	972186	rs78759328	C	T	443.01	.	AC=17;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1482C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1482C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1482C>T||||||
1	972204	.	G	A	132.52	.	AC=4;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1500G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1500G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1500G>A||||||
1	972276	.	G	C	56.29	.	AC=1;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1572G>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1572G>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1572G>C||||||
1	972323	rs113178724	C	T	2196.73	.	AC=58;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1619C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1619C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1619C>T||||||
1	972496	.	C	T	23.87	.	AC=2;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1792C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1792C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1792C>T||||||
1	972687	rs116780975	G	C	1407.38	.	AC=37;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1983G>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1983G>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1983G>C||||||
1	972689	.	G	A	96.12	.	AC=3;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+1985G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+1985G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+1985G>A||||||
1	972707	.	A	C	4.6	.	AC=1;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2003A>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2003A>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2003A>C||||||
1	972752	rs115026561	G	A	1159.58	.	AC=35;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2048G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2048G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2048G>A||||||
1	972893	.	G	A	67.12	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2189G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2189G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2189G>A||||||
1	972914	.	G	A	184.86	.	AC=6;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2210G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2210G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2210G>A||||||
1	972931	.	C	T	10.97	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2227C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2227C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2227C>T||||||
1	972983	rs9442390	C	T	1929.77	.	AC=76;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2279C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2279C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2279C>T||||||
1	972988	rs116225068	A	G	47.08	.	AC=4;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2284A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2284A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2284A>G||||||
1	973224	.	G	A	41.75	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2520G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2520G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2520G>A||||||
1	973303	rs111941407	G	A	69.0	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2599G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2599G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2599G>A||||||
1	973336	rs2488993	A	G	42742.96	.	AC=820;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2632A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2632A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2632A>G||||||
1	973348	rs28692550	G	A	8.79	.	AC=2;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.511+2644G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.646+2644G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.458+2644G>A||||||
1	973377	rs2465129	G	A	39343.27	.	AC=791;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2668G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2668G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2668G>A||||||
1	973396	.	G	T	50.68	.	AC=2;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2649G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2649G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2649G>T||||||
1	973458	rs2465130	C	T	52787.66	.	AC=913;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2587C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2587C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2587C>T||||||
1	973668	rs2488994	A	G	38245.78	.	AC=789;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2377A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2377A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2377A>G||||||
1	973859	rs116128075	C	T	580.3	.	AC=23;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2186C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2186C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2186C>T||||||
1	973887	.	C	T	9.19	.	AC=1;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2158C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2158C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2158C>T||||||
1	973945	.	C	A	21.23	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2100C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2100C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2100C>A||||||
1	974021	rs72900426	C	T	647.82	.	AC=16;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-2024C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-2024C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-2024C>T||||||
1	974068	.	G	A	8.63	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1977G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1977G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1977G>A||||||
1	974123	rs10126047	C	T	3209.43	.	AC=69;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1922C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1922C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1922C>T||||||
1	974141	rs116013160	C	T	124.35	.	AC=6;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1904C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1904C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1904C>T||||||
1	974164	rs113181980	C	T	532.14	.	AC=14;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1881C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1881C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1881C>T||||||
1	974180	rs3121577	G	T	49219.41	.	AC=870;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1865G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1865G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1865G>T||||||
1	974199	rs2465131	C	T	52641.63	.	AC=893;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1846C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1846C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1846C>T||||||
1	974221	.	G	A	27.67	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1824G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1824G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1824G>A||||||
1	974225	rs2488995	A	G	54992.74	.	AC=896;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1820A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1820A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1820A>G||||||
1	974296	rs2488996	A	G	63315.68	.	AC=934;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1749A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1749A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1749A>G||||||
1	974310	rs72900432	G	A	663.66	.	AC=20;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1735G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1735G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1735G>A||||||
1	974353	rs114753995	C	G	125.08	.	AC=6;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1692C>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1692C>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1692C>G||||||
1	974355	rs2488997	G	A	45064.89	.	AC=808;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1690G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1690G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1690G>A||||||
1	974356	rs2465132	T	C	39864.53	.	AC=795;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1689T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1689T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1689T>C||||||
1	974391	rs76088616	G	A	462.31	.	AC=11;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1654G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1654G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1654G>A||||||
1	974469	.	G	A	296.24	.	AC=5;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1576G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1576G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1576G>A||||||
1	974494	rs2465133	G	T	62624.91	.	AC=942;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1551G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1551G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1551G>T||||||
1	974570	rs2465134	T	G	43787.91	.	AC=872;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1475T>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1475T>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1475T>G||||||
1	974662	rs2465135	G	T	40400.19	.	AC=783;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1383G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1383G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1383G>T||||||
1	974705	.	C	T	54.6	.	AC=3;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1340C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1340C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1340C>T||||||
1	974710	rs115805682	A	T	378.98	.	AC=16;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1335A>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1335A>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1335A>T||||||
1	974863	.	G	A	37.89	.	AC=1;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1182G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1182G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1182G>A||||||
1	974894	rs3121578	C	T	32246.34	.	AC=758;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1151C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1151C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1151C>T||||||
1	974988	rs115049241	C	T	533.54	.	AC=31;ANN=T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-1057C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-1057C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-1057C>T||||||
1	975133	rs3121579	T	A	30812.92	.	AC=722;ANN=A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-912T>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-912T>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-912T>A||||||
1	975632	.	T	C	37.04	.	AC=4;ANN=C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-413T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-413T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-413T>C||||||
1	975702	rs9331224	A	G	28232.66	.	AC=692;ANN=G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-343A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-343A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-343A>G||||||
1	975781	rs116503955	C	T	216.32	.	AC=10;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||4998|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-264C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-264C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-264C>T||||||
1	975826	.	A	G	61.11	.	AC=3;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1A>G|||||4953|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-219A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-219A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-219A>G||||||
1	975897	rs115577723	C	A	109.58	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>A|||||4882|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-148C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-148C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-148C>A||||||
1	975954	.	C	T	5.76	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||4825|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|3/35|c.512-91C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript|2/2|n.647-91C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|1/2|n.459-91C>T||||||
1	976428	rs113660126	C	A	384.27	.	AC=24;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>A|||||4351|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>A|||||323|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|4/35|c.728-125C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|2/2|n.675-125C>A||||||
1	976514	rs79290478	C	A	4283.67	.	AC=194;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>A|||||4265|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>A|||||409|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|4/35|c.728-39C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|2/2|n.675-39C>A||||||
1	976554	.	C	G	56.29	.	AC=4;ANN=G|splice_region_variant&synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|5/36|c.729C>G|p.Gly243Gly|779/7323|729/6138|243/2045||,G|splice_region_variant&non_coding_exon_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|3/3|n.676C>G||||||,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>G|||||4225|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>G|||||449|
1	976629	rs113789806	C	T	140.47	.	AC=12;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|5/36|c.804C>T|p.Ala268Ala|854/7323|804/6138|268/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||4150|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||524|,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron|3/3|n.751C>T||||||
1	976963	.	A	G	110.48	.	AC=11;ANN=G|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|6/36|c.1058A>G|p.Gln353Arg|1108/7323|1058/6138|353/2045||,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1A>G|||||3816|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707A>G|||||858|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899A>G|||||186|
1	977028	.	G	T	7.18	.	AC=2;ANN=T|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|6/36|c.1123G>T|p.Ala375Ser|1173/7323|1123/6138|375/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>T|||||3751|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>T|||||923|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>T|||||251|
1	977133	rs61766305	G	A	593.44	.	AC=49;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||3646|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||1028|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||356|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|6/35|c.1177+51G>A||||||
1	977203	rs3121552	G	C	7760.34	.	AC=305;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>C|||||3576|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>C|||||1098|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>C|||||426|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|6/35|c.1177+121G>C||||||
1	977220	.	C	T	106.88	.	AC=8;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||3559|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||1115|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||443|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|6/35|c.1178-116C>T||||||
1	977294	rs114521679	G	A	336.06	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||3485|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||1189|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||517|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|6/35|c.1178-42G>A||||||
1	977330	rs2799066	T	C	26884.98	.	AC=606;ANN=C|splice_region_variant&intron_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|6/35|c.1178-6T>C||||||,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1T>C|||||3449|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707T>C|||||1225|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899T>C|||||553|
1	977570	rs2710876	G	A	29112.42	.	AC=613;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||3209|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||1465|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||793|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1384+28G>A||||||
1	977780	rs2710875	C	T	36254.19	.	AC=699;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||2999|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||4801|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||1675|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||1003|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1384+238C>T||||||
1	977920	.	C	T	156.6	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||2859|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||4661|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||4935|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||1815|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||1143|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1384+378C>T||||||
1	978046	rs9331225	C	T	1154.9	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||2733|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||4535|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||4809|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||1941|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||1269|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1384+504C>T||||||
1	978126	.	G	A	39.15	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||2653|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||4455|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||4729|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2021|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||1349|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1385-493G>A||||||
1	978139	.	G	C	158.94	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>C|||||2640|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>C|||||4442|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>C|||||4716|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>C|||||2034|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>C|||||1362|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1385-480G>C||||||
1	978193	rs2710873	G	A	5980.28	.	AC=109;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||2586|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||4388|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||4662|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2088|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||1416|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1385-426G>A||||||
1	978215	rs116190992	G	A	28.03	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||2564|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||4366|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||4640|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2110|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||1438|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1385-404G>A||||||
1	978241	.	G	A	29.83	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||2538|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||4340|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||4614|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2136|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||1464|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1385-378G>A||||||
1	978450	rs112281809	G	A	373.03	.	AC=11;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||2329|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||4131|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||4405|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2345|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||1673|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1385-169G>A||||||
1	978577	rs117179063	G	C	37.19	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>C|||||2202|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>C|||||4004|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>C|||||4278|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>C|||||2472|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>C|||||1800|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|7/35|c.1385-42G>C||||||
1	978628	rs116586548	C	T	176.04	.	AC=6;ANN=T|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|8/36|c.1394C>T|p.Pro465Leu|1444/7323|1394/6138|465/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||2151|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3953|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||4227|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||2523|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||1851|
1	978668	.	G	A	215.92	.	AC=3;ANN=A|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|8/36|c.1434G>A|p.Thr478Thr|1484/7323|1434/6138|478/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||2111|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||3913|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||4187|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2563|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||1891|
1	978752	.	C	T	108.83	.	AC=1;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|8/36|c.1518C>T|p.Gly506Gly|1568/7323|1518/6138|506/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||2027|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3829|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||4103|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||2647|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||1975|
1	978804	.	C	T	22.27	.	AC=1;ANN=T|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|8/36|c.1570C>T|p.Arg524Trp|1620/7323|1570/6138|524/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1975|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3777|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||4051|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||2699|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2027|
1	978847	rs60074964	G	A	35.27	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||1932|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||3734|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||4008|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2742|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||2070|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|8/35|c.1603+10G>A||||||
1	978856	rs115191992	G	A	128.33	.	AC=6;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||1923|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||3725|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||3999|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2751|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||2079|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|8/35|c.1603+19G>A||||||
1	978891	.	C	T	30.3	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1888|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3690|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||3964|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||2786|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2114|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|8/35|c.1604-27C>T||||||
1	978958	.	C	T	6.22	.	AC=1;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|9/36|c.1644C>T|p.Ala548Ala|1694/7323|1644/6138|548/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1821|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3623|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||3897|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||4951|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||2853|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2181|
1	978974	rs79016973	G	A	655.33	.	AC=22;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|9/36|c.1660G>A|p.Val554Met|1710/7323|1660/6138|554/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||1805|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||3607|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||3881|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||4935|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||2869|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||2197|
1	979188	.	C	T	160.02	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1591|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3393|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||3667|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||4721|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3083|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2411|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|9/35|c.1799-15C>T||||||
1	979219	.	C	T	37.47	.	AC=4;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|10/36|c.1815C>T|p.Ala605Ala|1865/7323|1815/6138|605/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1560|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3362|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||3636|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||4690|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3114|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2442|
1	979365	.	C	T	17.84	.	AC=1;ANN=T|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|10/36|c.1961C>T|p.Thr654Ile|2011/7323|1961/6138|654/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1414|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3216|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||3490|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||4544|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3260|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2588|
1	979437	.	C	T	265.96	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1342|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||3144|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||3418|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||4472|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3332|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2660|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|10/35|c.1999+34C>T||||||
1	979514	rs28484890	C	G	277.54	.	AC=10;ANN=G|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|11/36|c.2025C>G|p.Gly675Gly|2075/7323|2025/6138|675/2045||,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>G|||||1265|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>G|||||3067|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>G|||||3341|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>G|||||4395|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>G|||||3409|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>G|||||2737|
1	979556	.	G	A	237.42	.	AC=8;ANN=A|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|11/36|c.2067G>A|p.Gln689Gln|2117/7323|2067/6138|689/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||1223|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||3025|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||3299|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||4353|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||3451|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||2779|
1	979594	.	C	T	12.19	.	AC=1;ANN=T|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|11/36|c.2105C>T|p.Pro702Leu|2155/7323|2105/6138|702/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||1185|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2987|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||3261|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||4315|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3489|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||2817|
1	979669	rs113671331	G	A	63.99	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||1110|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2912|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||3186|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||4240|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||3564|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||2892|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|11/35|c.2148+32G>A||||||
1	979690	rs115413462	G	A	353.4	.	AC=18;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||1089|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2891|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||3165|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||4219|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||3585|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||2913|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|11/35|c.2149-24G>A||||||
1	979748	rs113288277	A	T	971.38	.	AC=27;ANN=T|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/36|c.2183A>T|p.Glu728Val|2233/7323|2183/6138|728/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1A>T|||||1031|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1A>T|||||2833|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>T|||||3107|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>T|||||4161|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707A>T|||||3643|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899A>T|||||2971|
1	979835	rs114389542	G	A	886.08	.	AC=27;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||944|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2746|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||3020|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||4074|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||3730|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3058|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+16G>A||||||
1	979890	rs116273657	C	T	565.13	.	AC=20;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||889|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2691|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2965|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||4019|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3785|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3113|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+71C>T||||||
1	979910	.	G	A	93.52	.	AC=4;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||869|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2671|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2945|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3999|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||3805|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3133|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+91G>A||||||
1	979912	.	C	T	17.81	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||867|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2669|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2943|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3997|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3807|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3135|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+93C>T||||||
1	979937	rs72900439	G	A	462.57	.	AC=16;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||842|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2644|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2918|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3972|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||3832|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3160|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+118G>A||||||
1	979946	rs112116379	C	T	37.2	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||833|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2635|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2909|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3963|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3841|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3169|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+127C>T||||||
1	980021	.	G	A	57.35	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||758|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2560|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2834|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3888|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||3916|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3244|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+202G>A||||||
1	980060	.	A	G	42.5	.	AC=4;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1A>G|||||719|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1A>G|||||2521|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>G|||||2795|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>G|||||3849|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707A>G|||||3955|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899A>G|||||3283|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+241A>G||||||
1	980077	rs116106396	C	T	1363.94	.	AC=38;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||702|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2504|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2778|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3832|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||3972|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3300|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+258C>T||||||
1	980124	.	T	A	193.61	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1T>A|||||655|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1T>A|||||2457|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1T>A|||||2731|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>A|||||3785|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707T>A|||||4019|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899T>A|||||3347|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+305T>A||||||
1	980163	rs28640190	G	A	855.99	.	AC=20;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||616|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2418|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2692|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3746|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||4058|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3386|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2254+344G>A||||||
1	980189	rs114879738	G	A	2636.88	.	AC=45;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||590|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2392|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2666|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3720|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||4084|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3412|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-352G>A||||||
1	980236	rs74045089	C	T	424.8	.	AC=12;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||543|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2345|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2619|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3673|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4131|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3459|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-305C>T||||||
1	980276	rs115449966	C	T	1628.16	.	AC=38;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||503|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2305|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2579|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3633|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4171|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3499|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-265C>T||||||
1	980305	.	G	A	49.14	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||474|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2276|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2550|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3604|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||4200|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3528|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-236G>A||||||
1	980357	.	C	A	23.92	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>A|||||422|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>A|||||2224|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>A|||||2498|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>A|||||3552|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>A|||||4252|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>A|||||3580|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-184C>A||||||
1	980411	.	C	T	22.81	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||368|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||2170|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2444|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3498|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4306|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3634|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-130C>T||||||
1	980440	rs112752525	G	A	503.94	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||339|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2141|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2415|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3469|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||4335|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3663|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-101G>A||||||
1	980447	.	T	G	209.27	.	AC=1;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1T>G|||||332|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1T>G|||||2134|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1T>G|||||2408|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>G|||||3462|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707T>G|||||4342|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899T>G|||||3670|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-94T>G||||||
1	980460	rs3128097	G	A	38962.23	.	AC=738;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||319|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2121|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2395|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3449|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||4355|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3683|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|12/35|c.2255-81G>A||||||
1	980552	.	G	A	40.67	.	AC=1;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|13/36|c.2266G>A|p.Ala756Thr|2316/7323|2266/6138|756/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1G>A|||||227|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||2029|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||2303|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||3357|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>A|||||4447|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||3775|
1	980696	rs116366767	C	T	71.47	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||83|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1885|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2159|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3213|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4591|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3919|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|13/35|c.2371+39C>T||||||
1	980727	.	C	A	37.08	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>A|||||52|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>A|||||1854|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>A|||||2128|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>A|||||3182|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>A|||||4622|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>A|||||3950|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|13/35|c.2372-12C>A||||||
1	980773	rs75774767	C	T	295.37	.	AC=8;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|14/36|c.2406C>T|p.Gly802Gly|2456/7323|2406/6138|802/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.-1C>T|||||6|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1808|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||2082|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||3136|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4668|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||3996|
1	980824	rs112039851	G	C	321.56	.	AC=23;ANN=C|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|14/36|c.2457G>C|p.Gly819Gly|2507/7323|2457/6138|819/2045||,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>C|||||1757|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>C|||||2031|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>C|||||3085|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707G>C|||||4719|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>C|||||4047|,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|1/4|n.46G>C||||||
1	980941	.	C	T	285.32	.	AC=7;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1640|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1914|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2968|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4995|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4836|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4164|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|14/35|c.2536+38C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|1/3|n.125+38C>T||||||
1	980948	rs116248983	C	T	193.88	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1633|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1907|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2961|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4988|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4843|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4171|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|14/35|c.2536+45C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|1/3|n.125+45C>T||||||
1	980975	rs113849939	C	A	325.86	.	AC=15;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>A|||||1606|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>A|||||1880|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>A|||||2934|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>A|||||4961|WARNING_TRANSCRIPT_INCOMPLETE,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>A|||||4870|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>A|||||4198|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|14/35|c.2536+72C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|1/3|n.125+72C>A||||||
1	981087	rs3128098	A	G	33625.74	.	AC=797;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1A>G|||||1494|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>G|||||1768|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>G|||||2822|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||4849|WARNING_TRANSCRIPT_INCOMPLETE,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707A>G|||||4982|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899A>G|||||4310|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|14/35|c.2537-26A>G||||||,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|1/3|n.126-26A>G||||||
1	981098	.	C	T	11.46	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1483|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1757|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2811|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4838|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000477585|processed_transcript||n.*707C>T|||||4993|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4321|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|14/35|c.2537-15C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|1/3|n.126-15C>T||||||
1	981131	rs9697293	A	G	993.04	.	AC=39;ANN=G|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|15/36|c.2555A>G|p.Gln852Arg|2605/7323|2555/6138|852/2045||,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1A>G|||||1450|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>G|||||1724|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>G|||||2778|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||4805|WARNING_TRANSCRIPT_INCOMPLETE,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899A>G|||||4354|,G|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|2/4|n.144A>G||||||
1	981318	.	A	T	6.64	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1A>T|||||1263|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>T|||||1537|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>T|||||2591|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>T|||||4618|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899A>T|||||4541|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|15/35|c.2681-26A>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|2/3|n.270-26A>T||||||
1	981340	.	C	T	28.28	.	AC=4;ANN=T|splice_region_variant&intron_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|15/35|c.2681-4C>T||||||,T|splice_region_variant&intron_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|2/3|n.270-4C>T||||||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1241|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1515|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2569|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4596|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4563|
1	981345	rs118105080	C	T	46.12	.	AC=5;ANN=T|splice_region_variant&synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|16/36|c.2682C>T|p.Asp894Asp|2732/7323|2682/6138|894/2045||,T|splice_region_variant&non_coding_exon_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|3/4|n.271C>T||||||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1236|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1510|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2564|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4591|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4568|
1	981475	.	G	A	127.61	.	AC=2;ANN=A|splice_region_variant&intron_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|16/35|c.2805+7G>A||||||,A|splice_region_variant&intron_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|3/3|n.394+7G>A||||||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>A|||||1106|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||1380|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||2434|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||4461|WARNING_TRANSCRIPT_INCOMPLETE,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899G>A|||||4698|
1	981510	.	C	T	70.79	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||1071|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1345|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2399|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4426|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4733|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|16/35|c.2806-30C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|3/3|n.395-30C>T||||||
1	981657	.	C	T	12.03	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||924|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1198|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2252|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4279|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4880|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|17/35|c.2911+12C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|4/4|n.512C>T||||||
1	981692	.	C	T	73.31	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||889|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||1163|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||2217|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||4244|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000469403|retained_intron||n.*899C>T|||||4915|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|17/35|c.2911+47C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron|4/4|n.547C>T||||||
1	981931	rs2465128	A	G	21852.04	.	AC=603;ANN=G|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|18/36|c.3066A>G|p.Ser1022Ser|3116/7323|3066/6138|1022/2045||,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1A>G|||||650|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>G|||||924|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>G|||||1978|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||4005|WARNING_TRANSCRIPT_INCOMPLETE,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584A>G|||||202|
1	981942	rs3813188	C	A	182.43	.	AC=12;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|18/36|c.3077C>A|p.Thr1026Asn|3127/7323|3077/6138|1026/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>A|||||639|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>A|||||913|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>A|||||1967|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>A|||||3994|WARNING_TRANSCRIPT_INCOMPLETE,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>A|||||213|
1	982213	.	G	C	342.46	.	AC=12;ANN=C|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/36|c.3264G>C|p.Leu1088Phe|3314/7323|3264/6138|1088/2045||,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>C|||||368|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>C|||||642|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>C|||||1696|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>C|||||3723|WARNING_TRANSCRIPT_INCOMPLETE,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>C|||||484|
1	982347	.	C	T	48.57	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||234|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||508|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1562|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3589|WARNING_TRANSCRIPT_INCOMPLETE,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||618|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+10C>T||||||
1	982380	.	G	T	46.12	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>T|||||201|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>T|||||475|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>T|||||1529|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>T|||||3556|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>T|||||4986|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>T|||||651|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+43G>T||||||
1	982403	.	C	T	288.47	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||178|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||452|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1506|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3533|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4963|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||674|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+66C>T||||||
1	982419	rs115112462	C	T	98.25	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||162|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||436|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1490|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3517|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4947|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||690|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+82C>T||||||
1	982425	.	C	T	59.2	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||156|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||430|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1484|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3511|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4941|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||696|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+88C>T||||||
1	982434	.	T	C	33.91	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1T>C|||||147|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1T>C|||||421|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||1475|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||3502|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4932|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||705|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+97T>C||||||
1	982444	rs3128099	A	G	30771.97	.	AC=681;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1A>G|||||137|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>G|||||411|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>G|||||1465|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||3492|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1A>G|||||4922|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584A>G|||||715|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+107A>G||||||
1	982454	.	C	T	35.08	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||127|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||401|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1455|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3482|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4912|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||725|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+117C>T||||||
1	982462	rs3128100	T	C	32514.05	.	AC=733;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1T>C|||||119|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1T>C|||||393|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||1447|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||3474|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4904|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||733|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+125T>C||||||
1	982472	rs116472750	G	T	485.62	.	AC=11;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1G>T|||||109|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>T|||||383|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>T|||||1437|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>T|||||3464|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>T|||||4894|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>T|||||743|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+135G>T||||||
1	982482	rs3813190	C	T	1013.65	.	AC=35;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||99|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||373|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1427|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3454|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4884|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||753|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+145C>T||||||
1	982484	rs3813191	C	T	943.06	.	AC=34;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||97|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||371|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1425|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3452|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4882|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||755|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+147C>T||||||
1	982510	.	C	T	47.02	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||71|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||345|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1399|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3426|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4856|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||781|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+173C>T||||||
1	982513	rs3128101	T	C	36142.02	.	AC=758;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1T>C|||||68|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1T>C|||||342|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||1396|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||3423|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4853|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||784|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3388+176T>C||||||
1	982539	.	C	A	146.81	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>A|||||42|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>A|||||316|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>A|||||1370|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>A|||||3397|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>A|||||4827|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>A|||||810|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3389-168C>A||||||
1	982573	rs3813192	C	T	951.87	.	AC=33;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.-1C>T|||||8|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1C>T|||||282|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||1336|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3363|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4793|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||844|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3389-134C>T||||||
1	982622	.	T	C	30.44	.	AC=2;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1T>C|||||233|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||1287|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||3314|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4744|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||893|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|19/35|c.3389-85T>C||||||,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/3|n.42T>C||||||
1	982722	.	A	G	128.81	.	AC=5;ANN=G|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|20/36|c.3404A>G|p.Gln1135Arg|3454/7323|3404/6138|1135/2045||,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1A>G|||||133|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1A>G|||||1187|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||3214|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1A>G|||||4644|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584A>G|||||993|,G|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/3|n.142A>G||||||
1	982783	.	T	C	80.18	.	AC=5;ANN=C|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|20/36|c.3465T>C|p.Ala1155Ala|3515/7323|3465/6138|1155/2045||,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1T>C|||||72|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||1126|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||3153|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4583|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||1054|,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/3|n.203T>C||||||
1	982844	rs76264143	G	C	1618.57	.	AC=62;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>C|||||11|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>C|||||1065|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>C|||||3092|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>C|||||4522|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>C|||||1115|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|20/35|c.3516+10G>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/2|n.254+10G>C||||||
1	982848	.	G	A	15.28	.	AC=2;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.-1G>A|||||7|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||1061|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||3088|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||4518|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||1119|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|20/35|c.3516+14G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/2|n.254+14G>A||||||
1	982906	.	G	A	29.46	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||1003|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||3030|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||4460|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||1177|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|20/35|c.3517-47G>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/2|n.255-47G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/2|n.52G>A||||||
1	982921	.	C	T	79.2	.	AC=6;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||988|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||3015|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4445|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||1192|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|20/35|c.3517-32C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/2|n.255-32C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/2|n.67C>T||||||
1	982941	rs3128102	T	C	24646.08	.	AC=650;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||968|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||2995|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4425|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||1212|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|20/35|c.3517-12T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|1/2|n.255-12T>C||||||,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/2|n.87T>C||||||
1	982994	rs10267	T	C	34191.17	.	AC=728;ANN=C|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|21/36|c.3558T>C|p.Phe1186Phe|3608/7323|3558/6138|1186/2045||,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||915|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||2942|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4372|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||1265|,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|2/3|n.296T>C||||||,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/2|n.140T>C||||||
1	983005	.	G	A	64.01	.	AC=1;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|21/36|c.3569G>A|p.Arg1190His|3619/7323|3569/6138|1190/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||904|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||2931|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||4361|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||1276|,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|2/3|n.307G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/2|n.151G>A||||||
1	983006	rs75361935	C	T	644.72	.	AC=17;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|21/36|c.3570C>T|p.Arg1190Arg|3620/7323|3570/6138|1190/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||903|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||2930|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4360|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||1277|,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|2/3|n.308C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/2|n.152C>T||||||
1	983040	.	G	A	33.9	.	AC=1;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|21/36|c.3604G>A|p.Ala1202Thr|3654/7323|3604/6138|1202/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||869|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||2896|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||4326|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||1311|,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|2/3|n.342G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/2|n.186G>A||||||
1	983124	rs2488999	C	A	30.68	.	AC=3;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>A|||||785|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>A|||||2812|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>A|||||4242|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>A|||||1395|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|21/35|c.3632-32C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron|2/2|n.370-32C>A||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron|1/1|n.214-32C>A||||||
1	983274	.	T	C	61.71	.	AC=1;ANN=C|splice_region_variant&synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|22/36|c.3750T>C|p.Phe1250Phe|3800/7323|3750/6138|1250/2045||,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||635|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||2662|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||4092|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||1545|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459T>C|||||29|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276T>C|||||56|
1	983341	.	C	T	56.63	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||568|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||2595|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||4025|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||1612|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||96|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||123|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|22/35|c.3752-51C>T||||||
1	983604	.	C	T	29.01	.	AC=4;ANN=T|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/36|c.3964C>T|p.Arg1322Trp|4014/7323|3964/6138|1322/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1C>T|||||305|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||2332|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||3762|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||1875|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||359|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||386|
1	983612	.	G	A	25.2	.	AC=2;ANN=A|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/36|c.3972G>A|p.Pro1324Pro|4022/7323|3972/6138|1324/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||297|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||2324|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||3754|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||1883|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||367|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||394|
1	983770	rs114691276	G	A	254.75	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||139|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||2166|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||3596|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||2041|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||525|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||552|,A|custom|MODIFIER|||CUSTOM&wgEncodeDukeDnase8988T|wgEncodeDukeDnase8988T:983646_983795|||||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4105+25G>A||||||
1	983861	.	G	A	45.14	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1G>A|||||48|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||2075|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||3505|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||2132|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||616|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||643|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4105+116G>A||||||
1	983885	.	T	C	35.66	.	AC=1;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.-1T>C|||||24|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||2051|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||3481|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||2156|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459T>C|||||640|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276T>C|||||667|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4105+140T>C||||||
1	983925	rs113521698	C	A	1305.01	.	AC=60;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>A|||||2011|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>A|||||3441|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>A|||||2196|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>A|||||680|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>A|||||707|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4105+180C>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.17C>A||||||
1	984016	rs112285003	G	A	1961.14	.	AC=66;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1920|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||3350|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||2287|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||771|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||798|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4106-231G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.108G>A||||||
1	984033	rs113822357	C	T	2788.83	.	AC=85;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||1903|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||3333|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||2304|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||788|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||815|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4106-214C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.125C>T||||||
1	984061	.	C	T	2085.84	.	AC=70;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||1875|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||3305|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||2332|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||816|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||843|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4106-186C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.153C>T||||||
1	984102	.	G	A	1027.0	.	AC=40;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1834|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||3264|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||2373|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||857|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||884|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4106-145G>A||||||,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.194G>A||||||
1	984202	rs115499153	A	G	909.17	.	AC=45;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||1734|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1A>G|||||3164|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584A>G|||||2473|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459A>G|||||957|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276A>G|||||984|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4106-45A>G||||||,G|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.294A>G||||||
1	984226	.	C	T	19.67	.	AC=2;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||1710|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||3140|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||2497|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||981|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||1008|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|23/35|c.4106-21C>T||||||,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.318C>T||||||
1	984280	.	G	A	10.44	.	AC=1;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|24/36|c.4139G>A|p.Arg1380His|4189/7323|4139/6138|1380/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1656|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||3086|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||2551|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||1035|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||1062|,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.372G>A||||||
1	984302	rs9442391	T	C	8684.84	.	AC=267;ANN=C|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|24/36|c.4161T>C|p.Thr1387Thr|4211/7323|4161/6138|1387/2045||,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||1634|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||3064|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||2573|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459T>C|||||1057|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276T>C|||||1084|,C|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/2|n.394T>C||||||
1	984456	.	C	T	25.07	.	AC=4;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||1480|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2910|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||2727|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||1211|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||1238|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|24/35|c.4298+17C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/1|n.531+17C>T||||||
1	984583	.	G	T	26.97	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>T|||||1353|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>T|||||2783|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>T|||||2854|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>T|||||1338|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>T|||||1365|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|24/35|c.4299-33G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|1/1|n.532-33G>T||||||
1	984640	rs114751046	G	A	37.92	.	AC=5;ANN=A|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/36|c.4323G>A|p.Ala1441Ala|4373/7323|4323/6138|1441/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1296|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||2726|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||2911|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||1395|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||1422|,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|2/2|n.556G>A||||||
1	984642	.	T	G	46.23	.	AC=10;ANN=G|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/36|c.4325T>G|p.Val1442Gly|4375/7323|4325/6138|1442/2045||,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>G|||||1294|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>G|||||2724|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>G|||||2913|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459T>G|||||1397|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276T>G|||||1424|,G|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|2/2|n.558T>G||||||
1	984670	.	G	A	42.65	.	AC=1;ANN=A|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/36|c.4353G>A|p.Pro1451Pro|4403/7323|4353/6138|1451/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1266|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||2696|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||2941|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||1425|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||1452|,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|2/2|n.586G>A||||||
1	984765	.	G	A	31.0	.	AC=1;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/36|c.4448G>A|p.Gly1483Asp|4498/7323|4448/6138|1483/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1171|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||2601|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||3036|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||1520|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||1547|,A|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|2/2|n.681G>A||||||
1	984769	rs75767981	C	T	273.84	.	AC=12;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/36|c.4452C>T|p.Thr1484Thr|4502/7323|4452/6138|1484/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||1167|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2597|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3040|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||1524|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||1551|,T|non_coding_exon_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron|2/2|n.685C>T||||||
1	984847	rs112917612	G	C	1352.25	.	AC=54;ANN=C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>C|||||1089|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>C|||||2519|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>C|||||3118|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>C|||||1602|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>C|||||1629|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>C|||||73|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/35|c.4514+16G>C||||||
1	984850	.	G	A	137.75	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1086|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||2516|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||3121|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||1605|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||1632|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||76|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/35|c.4514+19G>A||||||
1	984860	.	C	T	163.08	.	AC=3;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||1076|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2506|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3131|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||1615|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||1642|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||86|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/35|c.4514+29C>T||||||
1	984881	rs111525350	C	G	139.67	.	AC=11;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>G|||||1055|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>G|||||2485|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>G|||||3152|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>G|||||1636|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>G|||||1663|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>G|||||107|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/35|c.4514+50C>G||||||
1	984888	rs112331531	A	G	1701.78	.	AC=69;ANN=G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||1048|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1A>G|||||2478|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584A>G|||||3159|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459A>G|||||1643|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276A>G|||||1670|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690A>G|||||114|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/35|c.4514+57A>G||||||
1	984890	.	G	A	47.83	.	AC=1;ANN=A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||1046|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||2476|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||3161|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||1645|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||1672|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||116|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|25/35|c.4515-56G>A||||||
1	984971	rs111818381	G	A	148.89	.	AC=8;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|26/36|c.4540G>A|p.Ala1514Thr|4590/7323|4540/6138|1514/2045||,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||965|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||2395|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||3242|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||1726|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||1753|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||197|
1	985165	.	C	T	8.66	.	AC=1;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|26/36|c.4734C>T|p.Pro1578Pro|4784/7323|4734/6138|1578/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||771|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2201|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3436|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||1920|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||1947|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||391|
1	985171	rs115019873	C	T	199.91	.	AC=18;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|26/36|c.4740C>T|p.Arg1580Arg|4790/7323|4740/6138|1580/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||765|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2195|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3442|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||1926|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||1953|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||397|
1	985239	rs115192323	C	T	548.98	.	AC=32;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||697|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2127|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3510|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||1994|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2021|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||465|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|26/35|c.4745-44C>T||||||
1	985254	.	C	T	44.14	.	AC=5;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||682|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2112|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3525|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||2009|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2036|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||480|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|26/35|c.4745-29C>T||||||
1	985266	rs2275813	C	T	9228.88	.	AC=260;ANN=T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||670|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2100|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3537|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||2021|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2048|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||492|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|26/35|c.4745-17C>T||||||
1	985359	.	C	T	11.09	.	AC=1;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|27/36|c.4821C>T|p.Pro1607Pro|4871/7323|4821/6138|1607/2045||,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||577|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||2007|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3630|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||2114|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2141|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||585|
1	985446	rs2275812	G	T	2274.63	.	AC=126;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>T|||||4967|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>T|||||490|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>T|||||1920|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>T|||||3717|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>T|||||2201|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>T|||||2228|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>T|||||672|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|27/35|c.4879+29G>T||||||
1	985449	rs56255212	G	A	2841.07	.	AC=148;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>A|||||4964|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||487|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||1917|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||3720|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||2204|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||2231|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||675|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|27/35|c.4879+32G>A||||||
1	985460	rs2275811	T	C	1795.57	.	AC=109;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1T>C|||||4953|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2T>C|||||476|WARNING_TRANSCRIPT_INCOMPLETE,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||1906|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||3731|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459T>C|||||2215|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276T>C|||||2242|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690T>C|||||686|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|27/35|c.4879+43T>C||||||
1	985509	rs111638438	G	A	250.58	.	AC=12;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>A|||||4904|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||427|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||1857|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||3780|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||2264|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||2291|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||735|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|27/35|c.4879+92G>A||||||
1	985626	.	C	T	23.08	.	AC=6;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|28/36|c.4893C>T|p.Asp1631Asp|4943/7323|4893/6138|1631/2045||,T|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1C>T|||||4787|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||310|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||1740|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3897|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||2381|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2408|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||852|
1	985644	.	G	A	9.98	.	AC=1;ANN=A|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|28/36|c.4911G>A|p.Leu1637Leu|4961/7323|4911/6138|1637/2045||,A|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>A|||||4769|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||292|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||1722|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||3915|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||2399|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||2426|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||870|
1	985656	.	C	T	7.8	.	AC=1;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|28/36|c.4923C>T|p.Asn1641Asn|4973/7323|4923/6138|1641/2045||,T|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1C>T|||||4757|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||280|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||1710|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||3927|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||2411|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2438|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||882|
1	985753	rs60267685	G	A	238.61	.	AC=14;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>A|||||4660|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||183|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||1613|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||4024|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||2508|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||2535|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||979|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|28/35|c.4976+44G>A||||||
1	985797	.	A	G	280.96	.	AC=8;ANN=G|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1A>G|||||4616|,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2A>G|||||139|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1A>G|||||1569|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584A>G|||||4068|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459A>G|||||2552|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276A>G|||||2579|,G|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690A>G|||||1023|,G|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|28/35|c.4977-10A>G||||||
1	985826	rs17160775	G	A	1227.57	.	AC=52;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|29/36|c.4996G>A|p.Val1666Ile|5046/7323|4996/6138|1666/2045||,A|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>A|||||4587|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2G>A|||||110|WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||1540|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||4097|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||2581|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||2608|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||1052|
1	985900	rs17160776	C	T	1047.33	.	AC=45;ANN=T|synonymous_variant|LOW|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|29/36|c.5070C>T|p.Phe1690Phe|5120/7323|5070/6138|1690/2045||,T|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1C>T|||||4513|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding||c.-2C>T|||||36|WARNING_TRANSCRIPT_INCOMPLETE,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||1466|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||4171|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||2655|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2682|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||1126|
1	985999	rs111726760	G	T	935.73	.	AC=45;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>T|||||4414|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>T|||||1367|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>T|||||4270|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>T|||||2754|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>T|||||2781|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>T|||||1225|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|29/35|c.5141+28G>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding|1/8|c.35+28G>T||||||WARNING_TRANSCRIPT_INCOMPLETE
1	986010	rs116257587	T	C	969.54	.	AC=50;ANN=C|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1T>C|||||4403|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1T>C|||||1356|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584T>C|||||4281|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459T>C|||||2765|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276T>C|||||2792|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690T>C|||||1236|,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|29/35|c.5141+39T>C||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding|1/8|c.35+39T>C||||||WARNING_TRANSCRIPT_INCOMPLETE
1	986038	rs28758798	G	A,C	554.79	.	AC=22;ANN=A|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>A|||||4375|,C|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>C|||||4375|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||1328|,C|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>C|||||1328|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||4309|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>C|||||4309|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||2793|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>C|||||2793|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||2820|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>C|||||2820|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||1264|,C|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>C|||||1264|,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|29/35|c.5141+67G>A||||||,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|29/35|c.5141+67G>C||||||,A|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding|1/8|c.35+67G>A||||||WARNING_TRANSCRIPT_INCOMPLETE,C|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding|1/8|c.35+67G>C||||||WARNING_TRANSCRIPT_INCOMPLETE
1	986056	rs28545735	C	T	44.46	.	AC=1;ANN=T|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1C>T|||||4357|,T|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1C>T|||||1310|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584C>T|||||4327|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459C>T|||||2811|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276C>T|||||2838|,T|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690C>T|||||1282|,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|29/35|c.5142-50C>T||||||,T|intron_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding|1/8|c.36-50C>T||||||WARNING_TRANSCRIPT_INCOMPLETE
1	986165	.	G	A	97.69	.	AC=5;ANN=A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000379370|protein_coding|30/36|c.5201G>A|p.Arg1734His|5251/7323|5201/6138|1734/2045||,A|missense_variant|MODERATE|AGRN|ENSG00000188157|transcript|ENST00000419249|protein_coding|2/9|c.95G>A|p.Arg32His|96/813|95/812|32/269||WARNING_TRANSCRIPT_INCOMPLETE,A|upstream_gene_variant|MODIFIER|RP11-54O7.14|ENSG00000242590|transcript|ENST00000418300|sense_intronic||n.-1G>A|||||4248|,A|upstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000461111|retained_intron||n.-1G>A|||||1201|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000479707|retained_intron||n.*584G>A|||||4436|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000466223|retained_intron||n.*459G>A|||||2920|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000478677|retained_intron||n.*276G>A|||||2947|,A|downstream_gene_variant|MODIFIER|AGRN|ENSG00000188157|transcript|ENST00000492947|retained_intron||n.*690G>A|||||1391|
