##SnpEffVersion="4.1 (build 2015-01-07), by Pablo Cingolani"
##SnpEffCmd="SnpEff  GRCh37.75 examples/test.vcf "
##INFO=<ID=ANN,Number=.,Type=String,Description="Functional annotations: 'Allele | Annotation | Annotation_Impact | Gene_Name | Gene_ID | Feature_Type | Feature_ID | Transcript_BioType | Rank | HGVS.c | HGVS.p | cDNA.pos / cDNA.length | CDS.pos / CDS.length | AA.pos / AA.length | Distance | ERRORS / WARNINGS / INFO' ">
##INFO=<ID=LOF,Number=.,Type=String,Description="Predicted loss of function effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' ">
##INFO=<ID=NMD,Number=.,Type=String,Description="Predicted nonsense mediated decay effects for this variant. Format: 'Gene_Name | Gene_ID | Number_of_transcripts_in_gene | Percent_of_transcripts_affected' ">
1	10469	.	C	G	365.78	PASS	AC=30;AF=0.0732;ANN=G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328|processed_transcript||n.-1C>G|||||1400|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000515242|transcribed_unprocessed_pseudogene||n.-1C>G|||||1403|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000518655|transcribed_unprocessed_pseudogene||n.-1C>G|||||1405|,G|upstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000450305|transcribed_unprocessed_pseudogene||n.-1C>G|||||1541|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000438504|unprocessed_pseudogene||n.*1783G>C|||||3894|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000541675|unprocessed_pseudogene||n.*1416G>C|||||3894|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000423562|unprocessed_pseudogene||n.*1669G>C|||||3894|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000488147|unprocessed_pseudogene||n.*1351G>C|||||3935|,G|downstream_gene_variant|MODIFIER|WASH7P|ENSG00000227232|transcript|ENST00000538476|unprocessed_pseudogene||n.*1583G>C|||||3942|,G|custom|MODIFIER|||CUSTOM&my_annotations|MY_ANNOTATION|||||||||,G|intergenic_region|MODIFIER|DDX11L1|ENSG00000223972|intergenic_region|ENSG00000223972|||||||||
